Commit Graph

703 Commits

Author SHA1 Message Date
e2ae95ccd9 Merge branch 'master' into lammps-icms 2016-09-28 06:29:41 -04:00
8a6e5ed3ce git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15637 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2016-09-23 22:59:43 +00:00
6a199236de Needed to add some ugly hack in order to handle non-ASCII characters in both python 2 and 3. 2016-08-28 16:49:24 -04:00
afd94e2d3b add more comments, use correct PR submitter, some cleanup 2016-08-28 06:43:26 -04:00
9a05bdd795 apply utf-8 encoding to json data received from github. some comments. 2016-08-27 23:30:10 -04:00
6bc4674878 made the detection of pull request assignees more robust 2016-08-27 23:11:05 -04:00
de3e324f7e change default to verbose for pending-pulls.py script 2016-08-27 17:09:22 -04:00
485a86b4bb add python script allowing steve to poll and process pending pull requests from the command line 2016-08-27 01:45:34 -04:00
863a3d3319 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15163 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2016-06-14 13:59:39 +00:00
fa23218aa8 update ch2lmp README for recent changes and strip trailing whitespace 2016-06-13 15:25:26 -04:00
111777c6f6 Fix off-by-one bug reported on lammps-users
This fixes an off-by-one bug in the atom type validation check. Closes #91.
It also enables type and style hints by default and replaces
the -charmm command line flag with -nohints flag (to turn them off).
Hints are also added to section headers.
Add a brief minimization to example input template.
Step patch level version to 1.8.3.
2016-06-13 14:31:30 -04:00
7b8a96ee8c Merge remote-tracking branch 'lammps-ro/master' into lammps-icms 2016-06-01 06:35:25 -04:00
d7c5025530 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15068 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2016-05-31 13:58:37 +00:00
95e2ada933 do not try to extract removed folders 2016-05-11 18:38:55 -04:00
e8653342d8 update scripts for precompiled packages for new doc structure 2016-05-11 17:20:48 -04:00
f3e746d501 redo suppressions for valgrind 2016-04-27 15:12:35 -04:00
2a8c1add90 disable building delta rpms 2016-04-13 10:57:50 -04:00
739b14fae0 remove obsolete code 2016-03-11 15:43:22 -05:00
bce9b641f4 remove duplicate copy of fastdep tool. 2016-03-11 06:45:45 -05:00
ec96d05bc1 remove bogus include and fix path separator bug 2016-03-08 07:34:12 -05:00
f5d7fdd19a rewrite fastdep in C, some optimizations added and windows compatibility(?) 2016-03-08 07:18:57 -05:00
749ac0560f use the new fastdep tool for dependencies 2016-03-06 10:55:17 -05:00
41d65eedf4 adapt mkdep.c for building LAMMPS 2016-02-27 15:58:17 +01:00
ee99970793 import mkdep.c from the linux 2.4 kernel source 2016-02-27 15:09:40 +01:00
5a53d7be51 fix typo in excluding user-vtk 2016-02-06 09:36:26 -05:00
fb6fbe8c83 exclude user-vtk from package builds 2016-02-06 09:23:41 -05:00
bfa988207e git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14448 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2016-01-15 15:39:44 +00:00
7e1972ef8b add message about changes 2016-01-14 22:41:05 -05:00
a1e6d7d24f add a warning, if parameters for nonbonded are missing. 2016-01-14 22:33:27 -05:00
dc40129746 support marker IMPROPERS in addition to IMPROPER
CGenFF/Charmm-GUI generated parameter files and other recent CHARMM parameter files seem to be using the marker IMPROPERS instead of IMPROPER. with this change, both are recognized and translated to the same number (4).
2016-01-14 19:20:59 -05:00
f5cf3008dd added new (fast/small) test example for PCFF with ignore flag set 2016-01-03 16:21:34 -05:00
1aeecfb0cf Merge remote-tracking branch 'lammps-ro/master' into lammps-icms
# Resolved Conflicts:
#	doc/Manual.txt
#	doc/pair_reax.html
#	src/USER-PHONON/fix_phonon.cpp
2015-12-16 07:31:09 -05:00
074d5962c8 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14367 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2015-12-15 15:59:11 +00:00
5f802f86b5 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14366 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2015-12-15 15:59:01 +00:00
b1df2f7705 update webpages for recent changes and newly supported distributions 2015-11-23 16:35:13 -05:00
d7e8881d15 Merge remote-tracking branch 'lammps-ro/master' into lammps-icms 2015-11-20 06:52:38 -05:00
b857237fef git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14269 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2015-11-19 15:34:38 +00:00
d30955e5b3 Determine vendor and release more reliably for newer Fedora releases 2015-11-03 17:31:32 -05:00
1e9a4cc4b8 Merge remote-tracking branch 'lammps-ro/master' into lammps-icms
# Resolved Conflicts:
#	doc/Manual.html
#	doc/Manual.txt
#	src/REAX/fix_reax_bonds.cpp
#	src/REAX/fix_reax_bonds.h
#	src/REAX/pair_reax.cpp
#	src/USER-MGPT/pair_mgpt.cpp
#	src/USER-SMTBQ/pair_smtbq.cpp
#	src/lammps.cpp
#	src/timer.cpp
2015-10-31 10:54:08 -04:00
0aa77408f8 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14219 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2015-10-30 19:46:30 +00:00
01e0beda67 git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14218 f3b2605a-c512-4ea7-a41b-209d697bcdaa 2015-10-30 19:44:45 +00:00
3bbba19e85 correct bug in cleanup script and update permissions accordingly 2015-10-27 07:07:38 -04:00
f634a5e140 remove executable flag from makefiles 2015-10-26 22:41:04 -04:00
86948924ca rephrase msi2lmp force field error message 2015-10-24 01:20:32 -04:00
97cd8b401e update reference data for current version of msi2lmp and LAMMPS 2015-10-24 01:15:47 -04:00
adfaeadf63 add opls-aa test with decane molecules 2015-10-24 00:55:02 -04:00
104d5890b2 step version number and document changes 2015-10-24 00:53:06 -04:00
94618089ad add CT-CT-CT-CT torsion parameter to the OPLS/AA force field file 2015-10-23 23:31:55 -04:00
f19a7fa99c update RPM build instructions and spec file for Fedora 23 2015-10-16 15:27:29 -04:00
8ccb8bfd66 Merge remote-tracking branch 'lammps-ro/master' into lammps-icms
# Resolved Conflicts:
#	doc/Manual.html
#	doc/Manual.txt
#	doc/variable.txt
#	src/reader_xyz.cpp
2015-09-25 09:52:07 -04:00