Commit Graph

27090 Commits

Author SHA1 Message Date
f251bc544f support setting global virial for fix external from python 2021-07-17 07:38:53 -04:00
fa654f2270 add support for set_vector for fix external in c-library, python and unittest 2021-07-16 23:41:25 -04:00
d462bb3131 fix off-by-one bug 2021-07-16 22:44:04 -04:00
5912d0a1c2 add support for setting global energy for fix external to python module 2021-07-16 17:43:44 -04:00
f3dc13c9dd expand library interface for fix external functionality 2021-07-16 17:29:15 -04:00
8b1dedf04a add extract method to fix external 2021-07-16 17:21:57 -04:00
88e363c0bb document and add unit tests for lammps_set_fix_external_callback() 2021-07-16 14:51:04 -04:00
95792ac928 Merge pull request #2833 from athomps/delete-last-mol
Delete last mol
2021-07-15 17:16:48 -04:00
2a61f72790 Merge pull request #2827 from ohenrich/cg-dna
CG-DNA: New Class AtomVecOxdna
2021-07-15 16:43:08 -04:00
637eef51b9 reformat 2021-07-15 15:45:01 -04:00
dc70f97ad4 restore changes from upstream that were undone by incorrectly resolving merge conflicts 2021-07-15 15:44:35 -04:00
d97ea4ebf6 make dependency of CG-DNA on ASPHERE and MOLECULE a hard dependency 2021-07-15 15:42:50 -04:00
d024dc0e09 whitespace fixes 2021-07-15 15:12:04 -04:00
3402953f05 Merge pull request #2832 from stanmoore1/kk_snap_host
Revert Kokkos CPU SNAP to original code
2021-07-15 15:06:50 -04:00
a7619b8dae Removed virtual keyword, defined internal variable 2021-07-15 17:32:19 +01:00
e6181d14d7 Use latest versions in master branch 2021-07-15 13:53:15 +01:00
e99b8ed07c Merge branch 'master' into cg-dna 2021-07-15 13:37:24 +01:00
0f0059269d Modified data_bonds_post() and calling structure 2021-07-15 13:36:40 +01:00
54cf985280 Add message so no unexpected behavior 2021-07-14 20:54:50 -06:00
1ce5e3bd00 Merge branch 'master' of github.com:lammps/lammps into kk_snap_host 2021-07-14 14:49:16 -06:00
5af74edcc0 Merge pull request #2815 from stanmoore1/kk_hash
Add atom_map hash option for Kokkos package
2021-07-14 14:20:11 -04:00
2295745318 Revert to original SNAP code for Kokkos CPU 2021-07-14 11:21:12 -06:00
fb73382c94 Documented restriction on molecular count >= 1 for fix rigid 2021-07-14 11:13:54 -06:00
38b156a08a Resolved bogus merge conflict and added change to last molecule deletion 2021-07-14 11:07:10 -06:00
c9c27ac7e2 Merge pull request #2831 from stanmoore1/kk_noinit
Remove deprecated Kokkos code ViewAllocateWithoutInitializing
2021-07-14 12:09:30 -04:00
3895ae194d Make function static 2021-07-13 12:17:24 -06:00
871ef80f83 Merge branch 'master' of github.com:lammps/lammps into kk_noinit 2021-07-13 11:42:41 -06:00
fc5f91b44c Revert accidental change 2021-07-13 10:34:50 -06:00
ac07253ed6 Fix GPU issues 2021-07-13 10:29:37 -06:00
01d7afdaa4 Small refactor 2021-07-12 15:54:02 -06:00
4c0036955e Merge branch 'kk_hash' of github.com:stanmoore1/lammps into kk_hash 2021-07-12 15:53:50 -06:00
65e2a8f070 Avoid unnecessary deep_copy when only a single memory space 2021-07-12 14:21:05 -06:00
b4d3dbe0af Avoid unnecessary deep_copy when only a single memory space 2021-07-12 14:11:53 -06:00
b752bda1b9 Fix GPU issues 2021-07-12 13:06:54 -06:00
ad966e130b Fix typos 2021-07-12 10:41:31 -06:00
998b76520e Merge pull request #2830 from akohlmey/opencl-loader-3.0.8
Update OpenCL ICD loader and headers to latest spec 3.0.8
2021-07-12 11:44:34 -04:00
dfa5ecdc74 Merge pull request #2736 from akohlmey/nofdotr-tests-and-updates
Fix issues exposed by running pair style unit tests with `pair_modify nofdotr`
2021-07-12 11:10:47 -04:00
b361992292 Remove deprecated Kokkos code ViewAllocateWithoutInitializing 2021-07-12 08:53:07 -06:00
05f28661f2 temporarily skip some tests for REAXFF until working on PR #2708 2021-07-12 05:43:04 -04:00
bc4f2b65ae the INTEL package does not support pair_modify nofdotr
- no need to test for it
- add a check and report an error if the nofdotr setting is used
2021-07-12 05:19:41 -04:00
bc08d9a973 temporarily skip testing pair_modify nofdotr for reax/c until we merge PR #2708 2021-07-11 20:14:10 -04:00
6134164ad3 pair style rann does not support per-atom stress or pair_modify nofdotr 2021-07-11 20:03:52 -04:00
d774cd5ddc fix sign errors and pair_modify nofdotr behavior for pair style bop 2021-07-11 19:27:49 -04:00
7e3e786530 fix up pair style polymorphic for pair_modify nofdotr 2021-07-11 19:19:41 -04:00
90e0de8dca update MEAM package to correctly handle pair_modify nofdotr 2021-07-11 16:32:46 -04:00
5e096a7f9f correct ev_tally4() for pair_modify nofdotr 2021-07-11 16:04:17 -04:00
51d082ff2b reformat comments 2021-07-11 14:57:00 -04:00
eecc012525 sphinx 4.1.0 failes to parse utils::logmesg(lmp,format,...) template function 2021-07-11 14:56:47 -04:00
41a434ae1f fix compilation issues with new/old Intel compilers 2021-07-11 14:09:17 -04:00
b47a212b17 initialize "me" before using it. 2021-07-11 13:55:00 -04:00