Commit Graph

23762 Commits

Author SHA1 Message Date
f67d9bb523 Correct USER smd examples and remove tabs 2020-10-19 14:56:40 +02:00
7420b7018a Merge pull request #2427 from akohlmey/lammps-shell-tweaks
A few more tweaks for the LAMMPS Shell
2020-10-16 16:43:42 -04:00
4d31ae7279 Beter system folder detection, add URL to "help" commmand. avoid buffer overflow. 2020-10-16 15:17:57 -04:00
eaa75417f2 Merge pull request #2425 from akohlmey/more-doc-updates
More updates/reorganization of the programmer part of the manual
2020-10-16 15:02:21 -04:00
4335f3d2ab Add LAMMPS icon in docs 2020-10-16 12:18:25 -04:00
f547cb4262 clarify tasks for single() for Bond and Angle classes 2020-10-16 10:48:00 -04:00
f2ba37e35d try swithing the current working directory when dropped into a Windows system folder. 2020-10-16 10:47:23 -04:00
f5c457334a make headers more compact 2020-10-16 02:43:20 -04:00
dd7a3a3a54 move the entries about using the Python module into its own (sub) toctree 2020-10-15 20:29:24 -04:00
08d892d0d9 whitespace 2020-10-15 19:56:31 -04:00
5d3f10611a Adjust Python deprecation notice 2020-10-15 18:25:58 -04:00
99f9a16a25 Update Python docs 2020-10-15 18:19:57 -04:00
4a946f5388 rename sections to User Guide and Programmer Guide 2020-10-15 12:00:36 -04:00
f15dc4a0a8 add more details and derived class to the class diagram and use a different layout engine 2020-10-15 12:00:10 -04:00
bc16709150 tweak 2020-10-14 23:59:06 -04:00
dc8e6bc5ab mention example using the new Fortran module in examples/COUPLE/simple 2020-10-14 23:29:03 -04:00
88644caaec update header texts 2020-10-14 23:28:28 -04:00
937f8b3f61 reorder sections in developer guide 2020-10-14 22:57:41 -04:00
d41cce7660 update LAMMPS class diagram 2020-10-14 22:57:21 -04:00
a7a4ea76a2 update LAMMPS logo with raytraced version 2020-10-14 22:57:02 -04:00
89842fc7c4 Merge pull request #2418 from akohlmey/collected-small-changes
Collected small changes and bugfixes for the stable release
2020-10-14 17:45:10 -04:00
28641bcbc7 Merge pull request #2402 from ndtrung81/gpu-dpd
Allowed dpd/tstat/gpu and dpd/gpu to work together in pair style hybrid
2020-10-14 17:18:02 -04:00
61c33e5622 update documentation conventions for recent changes to the manual. 2020-10-14 17:01:58 -04:00
3926cbe5f0 Merge branch 'patch-3' of github.com:evoyiatzis/lammps into collected-small-changes 2020-10-14 15:18:03 -04:00
865b159d16 update singularity definitions for readline 6/7 to have a pkg-config file 2020-10-14 15:06:57 -04:00
234f27514f avoid CMake failure when reporting packages without any of them enabled 2020-10-14 14:59:24 -04:00
65eb4b5527 explicitly enable C++11 and use pkg-config to get readline flags 2020-10-14 14:33:12 -04:00
d322e29f64 mention that C++11 also needs to be enabled with Ubuntu 16.04 2020-10-14 14:30:03 -04:00
45939602a5 Update fix_widom.rst
the shake keyword is not applicable to widom insertions
2020-10-14 20:17:35 +02:00
18091f15e0 Merge branch 'master' into collected-small-changes 2020-10-14 13:11:30 -04:00
7f804512b7 rename to be consistent with example log files 2020-10-14 13:11:13 -04:00
d27c7cd2fc Merge pull request #2421 from akohlmey/remove-obsolete-files
Remove outdated or obsolete files
2020-10-14 13:09:52 -04:00
60ff1380d7 update log files for bench/POTENTIALS 2020-10-14 11:04:51 -04:00
50986d5f27 Merge pull request #2416 from akohlmey/lammps-shell-improvements
Bug fixes and improvements for the LAMMPS Shell tool
2020-10-14 10:42:30 -04:00
1e2c8ce2e6 correct data file for USER-EFF 2020-10-14 08:15:59 -04:00
3894212712 correctly use REBO potential 2020-10-14 08:04:57 -04:00
bb6cfbeec1 mention AMD GPUs 2020-10-14 08:04:37 -04:00
a002194e26 remove outdated "bench/KEPLER" folder 2020-10-14 07:57:32 -04:00
07387d5e6c remove outdated "examples/accelerate" folder 2020-10-14 07:56:58 -04:00
587be7a21a Remove makefiles for obsolete machines and configurations or that are redundant 2020-10-14 07:54:07 -04:00
89d60afb91 make certain alpha_final is initialized 2020-10-14 04:51:51 -04:00
00e1edfae9 add a preset for selecting gcc compilers (for cases where they are not the default) 2020-10-14 04:51:34 -04:00
2026636f72 overview description for the unit test folders 2020-10-13 22:00:10 -04:00
acbb54d35f tweak testing and add at test run for history expansion 2020-10-13 21:32:48 -04:00
f003a6c536 implement a test prototype for the LAMMPS shell 2020-10-13 20:36:24 -04:00
290763a844 add a test_mode where the isatty() check is bypassed and history not read
this is enabled when the LAMMPS_SHELL_TESTING environment variable is set
2020-10-13 17:09:11 -04:00
114dd48779 change behavior with respect to OpenMP versus the regular LAMMPS executable
since the shell is not meant to be run with MPI we can use all threads by default.
2020-10-13 17:08:23 -04:00
8ab5f3c71a adjust recently added/expanded tests so they skip tests when packages are missing 2020-10-13 15:42:21 -04:00
d0ac698a41 must not assume that size_one == nfield in DumpCustom since DumpVTK changes it
this changes all loops over format strings and output types to using nfield
2020-10-13 15:28:02 -04:00
e23774ed56 include "pointers.h" to avoid include file name conflicts when compiling with USER-VTK enabled 2020-10-13 15:26:38 -04:00