fc4fdd09ef
Fixed more whitespace issues
2021-11-03 11:44:29 +00:00
a37a113044
Merge branch 'lammps:develop' into intpos
2021-11-03 11:02:01 +00:00
b8970366e0
Fixed whitespace issues
2021-11-03 10:59:04 +00:00
515ef7bece
Merge pull request #3015 from lammps/dump-image-doc
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Move dump_modify options specific to image/movie to dump image doc page
2021-11-02 13:22:27 -07:00
80579593e0
Merge pull request #3014 from akohlmey/collected_small_changes
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Collected small changes and bugfixes
2021-11-02 13:02:31 -07:00
b044a2f88b
switch to https protocol for cloning MathJax
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https://github.blog/2021-09-01-improving-git-protocol-security-github/
2021-11-02 15:26:45 -04:00
d3af16c1fd
Merge branch 'develop' into collected_small_changes
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# Conflicts:
# src/fix_vector.cpp
2021-11-02 14:41:16 -04:00
71d48bc48a
Merge branch 'cmake_fixes' of https://github.com/pzeiger/lammps into collected_small_changes
2021-11-02 14:36:59 -04:00
91e6586e05
reorder
2021-11-02 14:35:36 -04:00
817e38fe68
change references to git:// protocol for accessing github to https://
2021-11-02 14:33:21 -04:00
278e531c14
fix typo
2021-11-02 14:33:00 -04:00
175f967051
change references to git:// protocol for accessing github to https://
2021-11-02 14:25:57 -04:00
59c060cc0e
switch to https protocol for cloning MathJax
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https://github.blog/2021-09-01-improving-git-protocol-security-github/
2021-11-02 14:14:08 -04:00
0439671e86
Merge pull request #3001 from akohlmey/modify-fix-compute-accessors
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Add accessor functions to `Modify` and `Domain` that do not require using class internal data structures
2021-11-02 11:02:01 -07:00
628091c510
add reference instead of replicating headline
2021-11-02 13:33:08 -04:00
a58242f24b
couple last tweaks to make the pages easier to navigate
2021-11-02 09:27:27 -06:00
dfc68e3c75
add header for dump_modify command summary
2021-11-02 08:49:34 -04:00
cf968ef286
Intpos ( #10 )
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* hbond comm added for rsq_hb
* lrefpos removed, extract scaled for oxDNA1
* Update pair_oxdna_hbond.cpp
2021-11-02 09:52:56 +00:00
bb176318fe
Merge branch 'lammps:develop' into intpos
2021-11-02 09:48:24 +00:00
7a228eedd2
move dump_modify options specific to image/movie to dump image doc page
2021-11-01 15:16:39 -06:00
9caad2be4d
update security statement
2021-11-01 09:59:38 -04:00
d5bfa09faa
modernize argument parsing
2021-11-01 09:19:33 -04:00
0bc9f887ec
fix index error
2021-10-31 19:46:37 -04:00
6b3ddb8a72
fix logic bug
2021-10-31 19:29:12 -04:00
2e72d6b5a5
Merge branch 'develop' into modify-fix-compute-accessors
2021-10-31 18:25:42 -04:00
bbbde3cc15
fix indexing bug
2021-10-31 18:10:32 -04:00
3887b08c1d
update new LAMMPS paper citation info
2021-10-31 18:10:32 -04:00
64764cc7b0
clarify the difference between C++ and Fortran versions of MEAM
2021-10-31 18:10:31 -04:00
4f0f791417
use new API, join loops, modernize
2021-10-31 17:37:43 -04:00
c5d6a310d8
Fixed cmake build script for QUIP in cases where MATH_LINKOPTS variable not set
2021-10-29 11:32:03 +02:00
4395530756
bugfix
2021-10-28 23:38:32 -04:00
ac4f2b2a32
use updated APIs
2021-10-28 23:25:04 -04:00
212d699078
implement Domain::get_region_by_id()
2021-10-28 23:24:38 -04:00
b15c02e3cd
Merge pull request #3012 from akohlmey/reserved_data_section_keywords
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Check for reserved data section keywords - update fix processing for data files
2021-10-28 19:52:27 -04:00
ed5c0e74d4
Merge pull request #3011 from stanmoore1/kk_bug
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Revert some changes in 7960a2d
2021-10-28 19:50:27 -04:00
440a517a5e
update fix rigid + property/atom example to avoid runtime failure
2021-10-28 17:01:12 -04:00
7dbbb9a0e6
refactor fix cmap to use current style and modernized parsing
2021-10-28 16:54:53 -04:00
adf1beea74
add mechanism to check for known data file section names
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using this mechanism we can reject custom section names that will
conflict with existing section names and thus avoid misleading errors.
apply this also to fix property atom, where the section name is
determined by the fix ID.
in addition, allow to specify NULL as section name, which will use
the fix ID.
2021-10-28 14:23:27 -04:00
e734eb837f
Revert some changes in 7960a2d7d2
2021-10-28 08:39:17 -06:00
608ad0bca0
Merge branch 'lammps:develop' into intpos
2021-10-28 09:48:17 +01:00
c8512249b7
Merge branch 'develop' into modify-fix-compute-accessors
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# Conflicts:
# src/PLUGIN/plugin.cpp
2021-10-27 21:14:05 -04:00
4a048e3f57
Merge pull request #3008 from akohlmey/next_patch_release
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Update version strings for next patch release
2021-10-27 20:19:33 -04:00
f72b532f0f
Merge pull request #3009 from rbberger/collected_small_changes
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Collected small changes
2021-10-27 19:31:22 -04:00
95d08c6667
update all makefiles to use DYN_LIB variable from master makefile
2021-10-27 17:41:16 -04:00
18a7c15441
forward DYN_LIB variable to Makefile.mpi
2021-10-27 17:21:38 -04:00
9424571ce2
Use correct sizeof in memset
2021-10-27 17:01:03 -04:00
153e77864d
Use LAMMPS_THIRDPARTY_URL variable for EIGEN3_URL
2021-10-27 16:45:08 -04:00
4ea848b4e9
Merge pull request #3002 from akohlmey/more-clang-tidy-refactoring
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Third chunk of semi-automatic refactoring with clang-tidy
2021-10-27 16:38:28 -04:00
2e9cdfa6dc
Merge remote-tracking branch 'origin/develop' into collected_small_changes
2021-10-27 16:38:01 -04:00
51bd05bb77
Make update_downloads.sh detect new URLs and report error
2021-10-27 16:33:21 -04:00
