Commit Graph

29877 Commits

Author SHA1 Message Date
935c17f02e Document multi-configuration build support in CMake 2021-11-04 16:32:21 -04:00
1a940e052e add support for and apply clang-format to lammps-shell code 2021-11-04 15:55:28 -04:00
aab4f71019 Merge branch 'develop' into multi-config-support
# Conflicts:
#	unittest/force-styles/test_error_stats.cpp
2021-11-04 15:50:49 -04:00
2cd862e4a2 Update lebedeva potential file and docs based on email on mailing list
https://matsci.org/t/lammps-users-webpage-and-parameter-file-for-the-lebedeva-potential/39059
2021-11-04 15:24:41 -04:00
8e89c7c654 correct unit description of eta_n0 parameters. fixes #3016 2021-11-04 15:24:41 -04:00
825945f783 mention that dump sorting is limited to less than 2 billion atoms 2021-11-04 15:24:41 -04:00
461a7afc22 remove PYTHON from "most" cmake preset.
The PYTHON package cannot be compiled without the python development
support being installed, so it must not be in the "most" preset
2021-11-04 15:24:41 -04:00
3ec3085f39 Merge pull request #3017 from akohlmey/portability-improvements
Portability improvements
2021-11-04 12:21:11 -07:00
564098e629 Update Kokkos library in LAMMPS to v3.5.0 2021-11-04 12:45:59 -06:00
0909b4da92 Updated dynamical matrix command to work with intel potentials 2021-11-04 11:35:31 -07:00
7c80911f66 whitespace 2021-11-03 15:23:29 -04:00
439f997a10 skip test for file not readable due to permissions on windows 2021-11-03 14:54:38 -04:00
62fc7b6fa0 small tweaks to make replacing the CMakeLists.txt file work as expected 2021-11-03 14:44:16 -04:00
37dfc9e141 simplify by not trying to use fetchcontent but do all steps manually
as it turns out, fetchcontent is calling external_project internally at
some point which to avoid is why this function was started in the first place
2021-11-03 14:43:18 -04:00
b7bf60ea53 use the portable platform::unlink() instead of unlink() 2021-11-03 14:26:50 -04:00
b86a3a5d6b Added missing } 2021-11-03 10:24:22 -07:00
5241f93641 Update third order format 2021-11-03 10:12:17 -07:00
35ff47411b Merge branch 'multi-config-support' of github.com:akohlmey/lammps into multi-config-support 2021-11-03 12:35:40 -04:00
7f0b2334a5 update plugin loader test 2021-11-03 11:52:32 -04:00
b95e12bb6c add additional function argument where we can supply our own CMakeLists.txt file 2021-11-03 11:50:39 -04:00
eb3f928f31 tweak epsilon for portability with windows 2021-11-03 10:54:40 -04:00
1ad982aa85 improve portability of unit test code for windows compilers 2021-11-03 10:54:21 -04:00
50f39cd752 implement and use a platform neutral abstraction of unsetenv(3) 2021-11-03 10:53:45 -04:00
e8f6024eae Fixed more whitespace issues 2021-11-03 11:46:56 +00:00
fc4fdd09ef Fixed more whitespace issues 2021-11-03 11:44:29 +00:00
a37a113044 Merge branch 'lammps:develop' into intpos 2021-11-03 11:02:01 +00:00
b8970366e0 Fixed whitespace issues 2021-11-03 10:59:04 +00:00
7ba211a727 Update dynamical matrix format 2021-11-02 21:57:55 -07:00
a9c6f943e1 correct test comparisons 2021-11-02 23:07:44 -04:00
6479116419 Merge branch 'develop' into multi-config-support 2021-11-02 16:39:12 -04:00
515ef7bece Merge pull request #3015 from lammps/dump-image-doc
Move dump_modify options specific to image/movie to dump image doc page
2021-11-02 13:22:27 -07:00
80579593e0 Merge pull request #3014 from akohlmey/collected_small_changes
Collected small changes and bugfixes
2021-11-02 13:02:31 -07:00
b044a2f88b switch to https protocol for cloning MathJax
https://github.blog/2021-09-01-improving-git-protocol-security-github/
2021-11-02 15:26:45 -04:00
d3af16c1fd Merge branch 'develop' into collected_small_changes
# Conflicts:
#	src/fix_vector.cpp
2021-11-02 14:41:16 -04:00
71d48bc48a Merge branch 'cmake_fixes' of https://github.com/pzeiger/lammps into collected_small_changes 2021-11-02 14:36:59 -04:00
91e6586e05 reorder 2021-11-02 14:35:36 -04:00
817e38fe68 change references to git:// protocol for accessing github to https:// 2021-11-02 14:33:21 -04:00
278e531c14 fix typo 2021-11-02 14:33:00 -04:00
175f967051 change references to git:// protocol for accessing github to https:// 2021-11-02 14:25:57 -04:00
59c060cc0e switch to https protocol for cloning MathJax
https://github.blog/2021-09-01-improving-git-protocol-security-github/
2021-11-02 14:14:08 -04:00
0439671e86 Merge pull request #3001 from akohlmey/modify-fix-compute-accessors
Add accessor functions to `Modify` and `Domain` that do not require using class internal data structures
2021-11-02 11:02:01 -07:00
628091c510 add reference instead of replicating headline 2021-11-02 13:33:08 -04:00
a58242f24b couple last tweaks to make the pages easier to navigate 2021-11-02 09:27:27 -06:00
dfc68e3c75 add header for dump_modify command summary 2021-11-02 08:49:34 -04:00
cf968ef286 Intpos (#10)
* hbond comm added for rsq_hb

* lrefpos removed, extract scaled for oxDNA1

* Update pair_oxdna_hbond.cpp
2021-11-02 09:52:56 +00:00
bb176318fe Merge branch 'lammps:develop' into intpos 2021-11-02 09:48:24 +00:00
7a228eedd2 move dump_modify options specific to image/movie to dump image doc page 2021-11-01 15:16:39 -06:00
9caad2be4d update security statement 2021-11-01 09:59:38 -04:00
d5bfa09faa modernize argument parsing 2021-11-01 09:19:33 -04:00
0bc9f887ec fix index error 2021-10-31 19:46:37 -04:00