Commit Graph

29877 Commits

Author SHA1 Message Date
6b3ddb8a72 fix logic bug 2021-10-31 19:29:12 -04:00
2e72d6b5a5 Merge branch 'develop' into modify-fix-compute-accessors 2021-10-31 18:25:42 -04:00
bbbde3cc15 fix indexing bug 2021-10-31 18:10:32 -04:00
3887b08c1d update new LAMMPS paper citation info 2021-10-31 18:10:32 -04:00
64764cc7b0 clarify the difference between C++ and Fortran versions of MEAM 2021-10-31 18:10:31 -04:00
4f0f791417 use new API, join loops, modernize 2021-10-31 17:37:43 -04:00
c5d6a310d8 Fixed cmake build script for QUIP in cases where MATH_LINKOPTS variable not set 2021-10-29 11:32:03 +02:00
4395530756 bugfix 2021-10-28 23:38:32 -04:00
ac4f2b2a32 use updated APIs 2021-10-28 23:25:04 -04:00
212d699078 implement Domain::get_region_by_id() 2021-10-28 23:24:38 -04:00
b15c02e3cd Merge pull request #3012 from akohlmey/reserved_data_section_keywords
Check for reserved data section keywords - update fix processing for data files
2021-10-28 19:52:27 -04:00
ed5c0e74d4 Merge pull request #3011 from stanmoore1/kk_bug
Revert some changes in 7960a2d
2021-10-28 19:50:27 -04:00
9ae05facb8 Updating file locations to master locations 2021-10-28 16:32:04 -07:00
440a517a5e update fix rigid + property/atom example to avoid runtime failure 2021-10-28 17:01:12 -04:00
7dbbb9a0e6 refactor fix cmap to use current style and modernized parsing 2021-10-28 16:54:53 -04:00
adf1beea74 add mechanism to check for known data file section names
using this mechanism we can reject custom section names that will
conflict with existing section names and thus avoid misleading errors.
apply this also to fix property atom, where the section name is
determined by the fix ID.
in addition, allow to specify NULL as section name, which will use
the fix ID.
2021-10-28 14:23:27 -04:00
e734eb837f Revert some changes in 7960a2d7d2 2021-10-28 08:39:17 -06:00
608ad0bca0 Merge branch 'lammps:develop' into intpos 2021-10-28 09:48:17 +01:00
c8512249b7 Merge branch 'develop' into modify-fix-compute-accessors
# Conflicts:
#	src/PLUGIN/plugin.cpp
2021-10-27 21:14:05 -04:00
4a048e3f57 Merge pull request #3008 from akohlmey/next_patch_release
Update version strings for next patch release
patch_27Oct2021
2021-10-27 20:19:33 -04:00
f72b532f0f Merge pull request #3009 from rbberger/collected_small_changes
Collected small changes
2021-10-27 19:31:22 -04:00
95d08c6667 update all makefiles to use DYN_LIB variable from master makefile 2021-10-27 17:41:16 -04:00
18a7c15441 forward DYN_LIB variable to Makefile.mpi 2021-10-27 17:21:38 -04:00
9424571ce2 Use correct sizeof in memset 2021-10-27 17:01:03 -04:00
153e77864d Use LAMMPS_THIRDPARTY_URL variable for EIGEN3_URL 2021-10-27 16:45:08 -04:00
4ea848b4e9 Merge pull request #3002 from akohlmey/more-clang-tidy-refactoring
Third chunk of semi-automatic refactoring with clang-tidy
2021-10-27 16:38:28 -04:00
2e9cdfa6dc Merge remote-tracking branch 'origin/develop' into collected_small_changes 2021-10-27 16:38:01 -04:00
51bd05bb77 Make update_downloads.sh detect new URLs and report error 2021-10-27 16:33:21 -04:00
addb087aac Merge branch 'lammps:develop' into intpos 2021-10-27 21:29:56 +01:00
c9da75ef85 Merge pull request #2968 from yury-lysogorskiy/feature/ml-pace-multispecies
Add multi-species support to ML-PACE package
2021-10-27 16:04:15 -04:00
a329de81bf Update source URLs for offline compilation tool 2021-10-27 15:56:28 -04:00
28d86578a3 update version strings for next patch release 2021-10-27 15:26:58 -04:00
da3115be2c Merge branch 'develop' into more-clang-tidy-refactoring
# Conflicts:
#	src/MANIFOLD/manifold_thylakoid.cpp
2021-10-27 15:23:57 -04:00
bd053d6841 Merge pull request #3004 from akohlmey/collected_small_changes
Collected small changes and bugfixes for the next patch release
2021-10-27 14:24:37 -04:00
b5e3d69c82 change downloaded archive name to more closely follow the confvention 2021-10-27 14:23:53 -04:00
c0c45be357 bugfix Fedora CMake compilation 2021-10-27 17:19:18 +02:00
9895d8436a update/clean downloading the ML-PACE/v.2021.10.25.tar.gz 2021-10-27 16:03:44 +02:00
a063209b2b update URL and filename for offline scripts 2021-10-27 08:31:36 -04:00
c911cd52bb whitespace 2021-10-27 08:24:07 -04:00
11ee3759df use consistent formatting 2021-10-27 08:22:18 -04:00
4957c8e382 Merge branch 'develop' into collected_small_changes 2021-10-27 08:20:19 -04:00
cc3349728b Merge pull request #2997 from stanmoore1/kk_omp_target
Add preliminary support for Kokkos OpenMPTarget backend
2021-10-27 08:15:45 -04:00
45359847f2 Merge pull request #3007 from masterleinad/avoid_retrict_icpx
Don't use -restrict for icpx
2021-10-27 08:10:09 -04:00
1247f4d67b add function to print information about available compressions tools 2021-10-26 20:00:55 -04:00
f0318fb874 try to make changing LMP_INC settings less confusing to inexperienced people 2021-10-26 19:16:13 -04:00
3376f3daa8 Remove unused import 2021-10-26 16:48:57 -04:00
008013ddfb Explicitly check for None 2021-10-26 15:19:46 -04:00
fe9dfc6095 follow Python style guidelines 2021-10-26 14:17:31 -04:00
3d9e4638a7 Don't use -restrict for icpx 2021-10-26 13:08:03 -04:00
3044923cbf less ambiguous tests for arguments being not None 2021-10-26 12:12:21 -04:00