Commit Graph

15593 Commits

Author SHA1 Message Date
c2758a0b55 Merge pull request #1126 from lammps/patch-18-sep-2018
patch 18Sep18
patch_18Sep2018
2018-09-18 21:50:30 -04:00
9c58834af2 Merge pull request #1127 from akohlmey/reax-bonds-typo
fix typo in gzip support for fix reax/bonds
2018-09-18 18:05:57 -04:00
4bfac61b1a fix typo in gzip support for fix reax/bonds 2018-09-18 17:41:02 -04:00
8dff5fd5d7 patch 18Sep18 2018-09-18 17:24:10 -04:00
e9ed95c2db Merge pull request #1108 from akohlmey/fix-sprintf-buffer-overflows
Avoid more buffer overflows due to using snprintf() on fixed size buffers
2018-09-18 16:57:10 -04:00
33e33048bf Merge pull request #1125 from athomps/sna-atom-leakfix
The sna*/atom computes were not destroying SNA objects. Fixed.
2018-09-18 15:50:17 -04:00
d753c51c45 The sna*/atom computes were not destroying SNA objects. Fixed. 2018-09-17 19:44:32 -06:00
e2293cc7df Merge pull request #1119 from lammps/doc-clarify
doc page clarifications
2018-09-17 06:10:25 -04:00
0c287a55cd Merge pull request #1092 from RomainVermorel/master
New stress/mop and stress/mop/profile computes for USER-MISC
2018-09-17 05:16:42 -04:00
5f6b5c5400 fix typo 2018-09-17 05:11:59 -04:00
494b149272 fix typo 2018-09-17 05:10:56 -04:00
39ee7876c4 fix typo 2018-09-17 05:09:23 -04:00
8fa80081df fix typo 2018-09-17 05:08:22 -04:00
e14db00d52 doc link adjustments 2018-09-14 17:31:33 -06:00
6ae4bdead5 Merge pull request #1089 from lammps/spread
2 new computes: chunk/spread/atom and reduce/chunk
2018-09-11 21:21:02 -04:00
1f5885fc45 Merge pull request #1099 from jrgissing/bond/react-efficient-competing_reactions
bond/react: efficient competing reactions
2018-09-11 21:18:41 -04:00
92b508f14c Merge pull request #1097 from lammps/localvars
add variable option to compute bond/angle/dihedral local
2018-09-11 21:18:15 -04:00
c3ece2f086 typo in fix relax/box doc page 2018-09-11 12:44:35 -06:00
7f328d3f79 cite a good book on SLLOD thermostatting for molecular systems 2018-09-11 11:49:46 -06:00
983e8bb110 doc page clarifications 2018-09-11 11:36:37 -06:00
0305cca1df make certain that *_freq flags are initialized. use -1 instead of 0 to avoid division by zero 2018-09-10 22:47:45 -04:00
3d2c731709 avoid class initialization order warnings 2018-09-10 22:32:56 -04:00
02b653c0ce correct end of itemized list to be compatible with txt2rst conversion 2018-09-10 22:22:42 -04:00
a33f45f176 Merge pull request #1112 from akohlmey/rename-cdeam-omp
Rename files for pair style eam/cd/omp in USER-OMP
2018-09-10 15:16:10 -04:00
a903e64947 Merge pull request #1114 from junghans/cmake_eigen3
cmake: fix Eigen3 detection
2018-09-10 10:45:20 -04:00
46b87518b8 cmake: use NO_MODULE for Eigen3 2018-09-10 00:35:55 -04:00
45682f8695 Merge pull request #1115 from junghans/cmake_globfix
cmake: fix globbing of emacs files
2018-09-09 22:15:44 -04:00
2faa34b2be Merge pull request #1105 from rbberger/truncate-file-path
Avoid buffer overflow during errors with long filenames
2018-09-09 01:30:14 -04:00
075d366051 Merge pull request #1116 from akohlmey/correct-doc-build
Correct multiple issues in manual build
2018-09-09 01:28:29 -04:00
3b073de357 make it less likely to have people get confused by Eigen3_DIR 2018-09-09 01:21:37 -04:00
6f379f54d6 Merge pull request #1117 from lammps/doc-tweak
small doc page changes, format and content on doc page tarballs
2018-09-07 23:48:46 -04:00
e325c78628 Merge pull request #1101 from Pakketeretet2/bugfix-pair-morse-smooth-linear
Bugfix pair morse smooth linear
2018-09-07 23:38:16 -04:00
b488f1072e recent package links 2018-09-07 14:22:38 -06:00
0384ef8967 more tweaks to client/server doc pages 2018-09-07 14:00:39 -06:00
25907c856e small doc page changes, format and content on doc page tarballs 2018-09-07 09:56:03 -06:00
861a7acdf0 cmake: fix globbing in some more places 2018-09-07 06:40:06 -06:00
aea148a86a Merge pull request #1100 from rbberger/info-command-refactoring
Avoid unnecessary sorting in print_columns
2018-09-06 22:55:56 -04:00
dd64c063cf various fixes for the manual to address breakage from merging MESSAGE and USER-SCAFACOS packages 2018-09-06 22:28:20 -04:00
44fcdc4024 update reference examples with versions that do not vary by MPI rank count 2018-09-06 21:20:47 -04:00
947f574503 Merge branch 'master' into compute_mop
# Conflicts:
#	cmake/CMakeLists.txt
2018-09-06 21:13:42 -04:00
5c4434b283 Merge pull request #1113 from akohlmey/more-codeowners
Expand the list of code owners for more automated review requests
2018-09-06 20:59:07 -04:00
8f8aee65d2 cmake: fix globbing of emacs files
Done by: sed -i '/GLOB/s@/\*\.@/[^.]*.@g' CMakeLists.txt
2018-09-06 14:52:49 -06:00
d7b00f86f8 cmake: fix Eigen3 detection
For some reason FindEigen3.cmake defines all cap. variables, i.e.
Eigen3_FOUND -> EIGEN3_FOUND
2018-09-06 14:18:31 -06:00
efd582fb21 update list of code owners for automatic review requests. started assigning core files 2018-09-06 13:13:20 -04:00
b915716b60 fix inconsistency resulting from error in auto-replace macro 2018-09-06 12:27:10 -04:00
b3079f3aec rename files and classes for pair style eam/cd/omp to follow the rename of the non-threaded classes 2018-09-06 12:07:25 -04:00
84657f1531 final pass at sprintf() buffer overflow prevention. also fix typo in previous commit 2018-09-06 12:00:04 -04:00
db510af582 more fixes for potential buffer overflows by using snprintf() instead of sprintf() 2018-09-06 11:32:44 -04:00
9c27548a5c more replacing of sprintf() with snprintf() 2018-09-06 10:45:48 -04:00
4d52cb9245 more buffer overflow avoiding through using snprintf() 2018-09-06 09:57:43 -04:00