Commit Graph

16635 Commits

Author SHA1 Message Date
5486896876 Merge pull request #1350 from akohlmey/next-patch-release
Step version string for next patch release
patch_28Feb2019
2019-02-28 17:56:51 -05:00
14e6c126a8 Merge pull request #1314 from charlessievers/OptimizedDynamicalMatrix
add command to compute the Dynamical Matrix
2019-02-28 17:08:36 -05:00
50fef541c2 add x-ref 2019-02-28 15:50:59 -05:00
5fd033c0a2 add one more false positive required by recent changes 2019-02-28 15:49:48 -05:00
1d2eab5e1b update attribution information in Package details documentation 2019-02-28 15:26:36 -05:00
7062bc862e remove third_order command and ASE based examples to be added in a new pull request 2019-02-28 15:21:48 -05:00
9298fe7868 fix segfault and copy-n-modify issues with third order command 2019-02-28 14:45:42 -05:00
16946d8c6d integrate dynamical_matrix command into LAMMPS manual 2019-02-28 14:45:07 -05:00
286112ffbc count each force computation as one simulation step. this avoids accessing uninitialized data, too. 2019-02-28 11:00:55 -05:00
326a97624e Merge pull request #1317 from ornladios/adios2-master
USER-ADIOS package with ADIOS 2.x
2019-02-27 17:24:12 -05:00
80392224cd Merge pull request #1351 from ellio167/kim-2.0.1
Bump KIM API version to 2.0.1
2019-02-27 17:21:30 -05:00
b60f0f754c small tweaks to USER-ADIOS docs 2019-02-27 17:18:08 -05:00
6bd56c2a85 update author attribution 2019-02-27 17:08:13 -05:00
a4e580879c Merge pull request #1347 from akohlmey/collected-small-fixes
Collected small fixes for the next patch release
2019-02-27 17:02:21 -05:00
54e5c76333 Bump KIM API version to 2.0.1 2019-02-27 15:50:08 -06:00
6bf9c06a5a Step version string for next patch release 2019-02-27 16:19:20 -05:00
9cc7bea05d bugfix for changes in #1340 2019-02-27 16:09:46 -05:00
099b9baf0d update blob about providing a suitable e-mail contact in PR template 2019-02-27 16:08:42 -05:00
28f1ad9145 update License section to unconditionally confirm GPL and LGPL licensing 2019-02-27 16:08:41 -05:00
f178cc0a73 add template for help requests and generic issues
NOTE: the help request issue template actually asks people
to post to the lammps-users mailing list.
2019-02-27 16:08:41 -05:00
9185f28a12 correct compute group/group documentation for use with EAM styles 2019-02-27 16:08:41 -05:00
229ded45ee pull request template update 2019-02-27 16:08:41 -05:00
ba320967a5 fix variable delete bug reported in #1346 2019-02-27 16:08:41 -05:00
73401d02c0 convert a couple of inputs from using pair style reax to reax/c 2019-02-27 16:08:41 -05:00
eb39866e87 Merge pull request #1340 from akohlmey/bonus-data-checks
Bonus data checks and updates. Part 1
2019-02-27 15:10:58 -05:00
0efc3765f8 add warning when writing incomplete data file due to bonus data 2019-02-27 14:57:25 -05:00
05774ed894 Merge pull request #1315 from jan-janssen/patch-1
Adjust LAMMPS python module for compiling the shared library with CMake, which uses a different extension on MacOS X.
2019-02-27 14:46:53 -05:00
c4d081b507 hide output to stderr when looking for adios-config. we only need the error status. 2019-02-27 14:16:36 -05:00
9bec93faa9 update spell-checking false positives for USER-ADIOS package 2019-02-26 19:51:18 -05:00
9178b9446a remove trailing whitespace 2019-02-26 19:50:50 -05:00
36b8271e04 Merge pull request #1348 from akohlmey/create-atoms-optimization
Optimization for create_atoms with regions (2nd attempt)
2019-02-26 12:19:37 -05:00
de29763d1a new attempt at the create_atoms optimization for small regions in large boxes
this passes the test input with the rotated lattice
2019-02-25 17:11:54 -05:00
394fd751d1 Merge pull request #1344 from erozic/bugfix-library-scatter-subset
Fixed bug in lammps_scatter_atoms_subset...
2019-02-22 15:10:33 -05:00
d76569c033 Merge pull request #1320 from eofetis/manual-pdf-support
Add support for Sphinx+PDF+MathJax
2019-02-22 15:10:13 -05:00
e6df92e65a Merge pull request #1011 from ellio167/kim-v2-update
KIM v2 update
2019-02-21 20:06:59 -05:00
e6a7c8b03b Merge pull request #1335 from donatas-surblys/langevin-tally-zero
correct fix langevin with tally yes zero yes
2019-02-21 20:06:44 -05:00
b38033bc59 Fixed bug in lammps_scatter_atoms_subset...
- ids was ignored for the single-value integer arrays (e.g. type, id, ...)
2019-02-21 01:07:46 +01:00
3ad268739b Add dump adios to PDF build. Update example config with better documentation 2019-02-20 17:02:48 -05:00
a5f20305d4 Add user-adios to PACKLIB and PACKEXT 2019-02-20 16:28:51 -05:00
2de01cef45 Dump atom/adios and dump custom/adios command notifications 2019-02-20 16:21:07 -05:00
1179beb543 Makefile build support for USER-ADIOS and build documentation 2019-02-20 14:42:28 -05:00
75fe967876 remove fluff about adios in CMakeLists.txt. 2019-02-20 09:02:24 -05:00
9c52a37546 PIMPL implementation of USER-ADIOS to hide internal data from style header file 2019-02-20 09:02:24 -05:00
a4b9542ba9 remove personal runconf file. cleanup ADIOS2 xml config file for example 2019-02-20 09:02:24 -05:00
410d79d8b7 Add an example for USER/adios based on the balance example 2019-02-20 09:02:24 -05:00
200fed9d4c Fix basic errors in USER-ADIOS code 2019-02-20 09:02:24 -05:00
24234d3a0b Fixed cmake build for ADIOS 2.x 2019-02-20 09:02:24 -05:00
8db88b1c02 Added initial untested ADIOS 2.x code with cmake building problems 2019-02-20 09:02:24 -05:00
12bec9cbad Merge pull request #1339 from pmla/ptm-update
USER-PTM package update
2019-02-18 19:43:31 +01:00
9207b8814e Merge pull request #1341 from rbberger/cmake_detect_changes
Fixes part of issue #1278
2019-02-18 08:18:47 +01:00