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lammps/doc/src
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Axel Kohlmeyer 77bdcb3e19 small doc style update
2023-07-15 12:36:41 -04:00
..
_ext
…
99
…
2001
getting out of the insurance business :-)
2023-01-23 16:45:41 -05:00
img
add examples import one image to manual
2022-05-08 21:15:32 -04:00
JPG
Convert PDLAMMPS user doc from latex to sphinx
2022-09-29 06:57:52 -04:00
PDF
Update Colvars library to version 2023-05-01
2023-05-17 13:29:00 -04:00
.gitignore
…
accel_styles.rst
Math replacements and cosmetic edits to documentation
2022-09-01 01:01:46 -05:00
angle_amoeba.rst
fix documentation issues (spelling, references, non-ASCII chars)
2022-07-04 19:09:56 -04:00
angle_charmm.rst
avoid duplication of Accelerator package info in additional doc pages
2021-10-11 16:49:59 -06:00
angle_class2.rst
sync with current develop
2022-04-18 17:29:23 -06:00
angle_coeff.rst
more formatting/typesetting consistency
2022-09-03 04:17:22 -04:00
angle_cosine_buck6d.rst
bulk rename of remaining USER- packages
2021-06-29 20:12:59 -04:00
angle_cosine_delta.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
angle_cosine_periodic.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
angle_cosine_shift_exp.rst
correct package designations for styles in the EXTRA-MOLECULES package
2021-08-22 11:27:48 -04:00
angle_cosine_shift.rst
correct package designations for styles in the EXTRA-MOLECULES package
2021-08-22 11:27:48 -04:00
angle_cosine_squared.rst
…
angle_cosine.rst
…
angle_cross.rst
fix up mistyped package names
2021-07-03 16:19:15 -04:00
angle_dipole.rst
consistently apply \vec{} macro to only the first text/character and not subscripts
2023-04-13 20:06:35 -04:00
angle_fourier_simple.rst
correct package designations for styles in the EXTRA-MOLECULES package
2021-08-22 11:27:48 -04:00
angle_fourier.rst
correct package designations for styles in the EXTRA-MOLECULES package
2021-08-22 11:27:48 -04:00
angle_gaussian.rst
expand valid range of bond/angle style gaussian. update docs and tests.
2022-11-21 22:28:44 -05:00
angle_harmonic.rst
…
angle_hybrid.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
angle_lepton.rst
update versions strings for the next feature release
2023-02-03 11:39:50 -05:00
angle_mesocnt.rst
update versions strings for the next patch release
2022-09-14 16:29:10 -04:00
angle_mm3.rst
fix up mistyped package names
2021-07-03 16:19:15 -04:00
angle_none.rst
…
angle_quartic.rst
correct package designations for styles in the EXTRA-MOLECULES package
2021-08-22 11:27:48 -04:00
angle_spica.rst
changed rstfile names, style names, and description about FF for SPICA
2022-07-08 16:54:01 +09:00
angle_style.rst
update docs to include angle style lepton
2022-12-23 16:07:14 -05:00
angle_table.rst
implement angle_write command
2022-12-24 22:52:16 -05:00
angle_write.rst
update versions strings for the next feature release
2023-02-03 11:39:50 -05:00
angle_zero.rst
Tweaks to documentation to make it more consistent and machine-readable
2022-08-19 19:25:15 -05:00
angles.rst
…
atc_add_molecule.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
atc_add_species.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
atc_atom_element_map.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
atc_atom_weight.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
atc_atomic_charge.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
atc_boundary_dynamics.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
atc_boundary_faceset.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
atc_boundary_type.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
atc_consistent_fe_initialization.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
atc_control_localized_lambda.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
atc_control_momentum.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
atc_control_thermal.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
atc_decomposition.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
atc_electron_integration.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
atc_equilibrium_start.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
atc_extrinsic_exchange.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
atc_fe_md_boundary.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
atc_filter_scale.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
atc_filter_type.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
atc_fix_flux.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
atc_fix.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
atc_hardy_computes.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
atc_hardy_fields.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
atc_hardy_gradients.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
atc_hardy_kernel.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
atc_hardy_on_the_fly.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
atc_hardy_rates.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
atc_initial.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
atc_internal_element_set.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
atc_internal_quadrature.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
atc_kernel_bandwidth.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
atc_lumped_lambda_solve.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
atc_mask_direction.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
atc_mass_matrix.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
atc_material.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
atc_mesh_add_to_nodeset.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
atc_mesh_create_elementset.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
atc_mesh_create_faceset_box.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
atc_mesh_create_faceset_plane.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
atc_mesh_create_nodeset.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
atc_mesh_create.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
atc_mesh_delete_elements.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
atc_mesh_nodeset_to_elementset.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
atc_mesh_output.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
atc_mesh_quadrature.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
atc_mesh_read.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
atc_mesh_write.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
atc_output_boundary_integral.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
atc_output_contour_integral.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
atc_output_nodeset.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
atc_output_volume_integral.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
atc_output.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
atc_pair_interactions.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
atc_poisson_solver.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
atc_read_restart.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
atc_remove_molecule.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
atc_remove_source.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
atc_remove_species.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
atc_reset_atomic_reference.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
atc_reset_time.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
atc_sample_frequency.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
atc_set_reference_pe.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
atc_source_integration.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
atc_source.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
atc_temperature_definition.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
atc_time_filter.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
atc_time_integration.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
atc_track_displacement.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
atc_unfix_flux.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
atc_unfix.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
atc_write_atom_weights.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
atc_write_restart.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
atom_modify.rst
Add a couple notes to the docs
2023-04-27 15:17:54 -06:00
atom_style.rst
Merge branch 'develop' into gran-temp
2023-03-16 17:44:36 -04:00
balance.rst
fix spelling issues
2023-03-07 19:41:50 -05:00
Bibliography.rst
update URL
2023-07-09 21:39:51 -04:00
bond_bpm_rotational.rst
make error messages consistent with keyword values yes/no. Allow coul weight for 1-2 bonds to be zero for break no to eliminate bonded atoms from neighbor list when bonds cannot break
2023-07-06 17:48:49 -06:00
bond_bpm_spring.rst
make error messages consistent with keyword values yes/no. Allow coul weight for 1-2 bonds to be zero for break no to eliminate bonded atoms from neighbor list when bonds cannot break
2023-07-06 17:48:49 -06:00
bond_class2.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
bond_coeff.rst
Missing key word in fix/ave/chunk docs, edits to bond_coeff docs
2022-10-13 14:42:10 -05:00
bond_fene_expand.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
bond_fene.rst
Fixing typo in equation for fene/nm
2023-02-24 12:27:53 +02:00
bond_gaussian.rst
expand valid range of bond/angle style gaussian. update docs and tests.
2022-11-21 22:28:44 -05:00
bond_gromos.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
bond_harmonic_restrain.rst
update version strings to 28 March 2023 for upcoming release
2023-03-25 06:14:52 -04:00
bond_harmonic_shift_cut.rst
correct package designations for styles in the EXTRA-MOLECULES package
2021-08-22 11:27:48 -04:00
bond_harmonic_shift.rst
correct package designations for styles in the EXTRA-MOLECULES package
2021-08-22 11:27:48 -04:00
bond_harmonic.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
bond_hybrid.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
bond_lepton.rst
update versions strings for the next feature release
2023-02-03 11:39:50 -05:00
bond_mesocnt.rst
update versions strings for the next patch release
2022-09-14 16:29:10 -04:00
bond_mm3.rst
make \AA macro available in :math: for HTML and PDF
2022-10-01 20:58:48 -04:00
bond_morse.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
bond_none.rst
…
bond_nonlinear.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
bond_oxdna.rst
Merge pull request #2924 from ohenrich/cg-dna
2021-09-07 14:12:07 -04:00
bond_quartic.rst
clarify LJ energy function component of the quartic bond style
2022-09-30 19:48:56 -04:00
bond_special.rst
move some styles around
2021-07-09 16:54:00 -04:00
bond_style.rst
doc page for new command
2023-04-29 18:50:15 -06:00
bond_table.rst
update/correct section header (this is not a fix)
2023-03-03 17:17:07 -05:00
bond_write.rst
fix broken doc links
2023-03-04 17:03:07 -05:00
bond_zero.rst
Tweaks to documentation to make it more consistent and machine-readable
2022-08-19 19:25:15 -05:00
bonds.rst
…
boundary.rst
revise based on suggestions from languagetool.org
2023-01-22 09:50:27 -05:00
Build_basics.rst
remove all files and dirs relevant to the fix latte command
2023-02-24 16:13:50 -07:00
Build_cmake.rst
some more languagtool.org suggested updates
2023-01-23 05:15:34 -05:00
Build_development.rst
start document describing the implementation of a pair style
2023-02-27 01:58:59 -05:00
Build_diskspace.rst
update documentation to refer to the new branch names (develop, release)
2021-10-10 04:39:16 -04:00
Build_extras.rst
No need to use nvcc_wrapper globally when configuring with CMake
2023-04-06 07:21:37 -04:00
Build_link.rst
some more languagtool.org suggested updates
2023-01-23 05:15:34 -05:00
Build_make.rst
use macOS consistently (missed a few places in the last round)
2023-05-06 22:40:58 -04:00
Build_manual.rst
spelling
2023-05-19 00:40:45 -04:00
Build_package.rst
remove all files and dirs relevant to the fix latte command
2023-02-24 16:13:50 -07:00
Build_settings.rst
some more languagtool.org suggested updates
2023-01-23 05:15:34 -05:00
Build_windows.rst
more information about compiling LAMMPS on windows
2022-05-19 00:06:00 -04:00
Build.rst
some more languagtool.org suggested updates
2023-01-23 05:15:34 -05:00
change_box.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
Classes_atom.rst
…
Classes_input.rst
…
Classes_lammps.rst
…
Classes.rst
…
clear.rst
delete atomfile style variables with clear command
2022-10-18 07:34:06 -04:00
comm_modify.rst
Fixing merge conflicts
2023-03-20 14:19:58 -06:00
comm_style.rst
…
Commands_all.rst
add dihedral_write command
2022-12-25 07:01:37 -05:00
Commands_bond.rst
implementation of bond style harmonic/restrain /w docs
2023-03-03 16:54:47 -05:00
Commands_category.rst
update documentation for removal of box command
2022-11-21 14:04:58 -05:00
Commands_compute.rst
Fix doc links
2023-06-14 15:04:46 +02:00
Commands_dump.rst
add missing entry to list
2022-12-20 10:57:38 -05:00
Commands_fix.rst
Merge branch 'develop' into pimd_langevin
2023-05-17 17:30:49 -04:00
Commands_input.rst
add -skiprun command line flag that sets a timeout so that run and minimizations loops are skipped
2021-09-03 11:21:42 -04:00
Commands_kspace.rst
add a table with list of dump styles
2022-07-15 14:47:45 -06:00
commands_list.rst
add dihedral_write command
2022-12-25 07:01:37 -05:00
Commands_pair.rst
correctly indicate OPT package version of pair style
2023-06-06 16:11:03 -04:00
Commands_parse.rst
clarification on what constituets single, double, and triple quotes.
2022-08-03 01:50:11 -04:00
Commands_removed.rst
update version strings for upcoming release
2023-06-14 21:50:27 -04:00
Commands_structure.rst
…
Commands.rst
properly integrate the new file into the document toctree
2022-07-15 17:51:36 -04:00
compute_ackland_atom.rst
Updates to fix code-block at top, math, and anything else I found
2022-08-15 20:17:36 -05:00
compute_adf.rst
getting out of the insurance business :-)
2023-01-23 16:45:41 -05:00
compute_angle_local.rst
Updates to fix code-block at top, math, and anything else I found
2022-08-15 20:17:36 -05:00
compute_angle.rst
Updates to fix code-block at top, math, and anything else I found
2022-08-15 20:17:36 -05:00
compute_angmom_chunk.rst
reorder punctuation and quotation characters for clarity
2022-09-12 19:02:46 -04:00
compute_ave_sphere_atom.rst
add some more versionadded tags, now mostly complete for 2022
2022-09-25 09:41:55 -04:00
compute_basal_atom.rst
Updates to fix code-block at top, math, and anything else I found
2022-08-15 20:17:36 -05:00
compute_body_local.rst
Updates to fix code-block at top, math, and anything else I found
2022-08-15 20:17:36 -05:00
compute_bond_local.rst
Adding option to doc files, clarifying normal forces in compute pair/bond local
2023-05-19 13:51:53 -06:00
compute_bond.rst
Updates to fix code-block at top, math, and anything else I found
2022-08-15 20:17:36 -05:00
compute_born_matrix.rst
reorder punctuation and quotation characters for clarity
2022-09-12 19:02:46 -04:00
compute_centro_atom.rst
Updates to fix code-block at top, math, and anything else I found
2022-08-15 20:17:36 -05:00
compute_chunk_atom.rst
make \AA macro available in :math: for HTML and PDF
2022-10-01 20:58:48 -04:00
compute_chunk_spread_atom.rst
Updates to fix code-block at top, math, and anything else I found
2022-08-15 20:17:36 -05:00
compute_cluster_atom.rst
More math and code-block edits
2022-08-15 23:48:30 -05:00
compute_cna_atom.rst
getting out of the insurance business :-)
2023-01-23 16:45:41 -05:00
compute_cnp_atom.rst
Updates to fix code-block at top, math, and anything else I found
2022-08-15 20:17:36 -05:00
compute_com_chunk.rst
reorder punctuation and quotation characters for clarity
2022-09-12 19:02:46 -04:00
compute_com.rst
reorder punctuation and quotation characters for clarity
2022-09-12 19:02:46 -04:00
compute_contact_atom.rst
More math and code-block edits
2022-08-15 23:48:30 -05:00
compute_coord_atom.rst
Tweaks to documentation to make it more consistent and machine-readable
2022-08-19 19:25:15 -05:00
compute_count_type.rst
update version strings for upcoming release
2023-06-14 21:50:27 -04:00
compute_damage_atom.rst
reference the Howto from the rest of the manual. Spelling fixes.
2022-09-29 07:43:01 -04:00
compute_dihedral_local.rst
More math and code-block edits
2022-08-15 23:48:30 -05:00
compute_dihedral.rst
More math and code-block edits
2022-08-15 23:48:30 -05:00
compute_dilatation_atom.rst
reference the Howto from the rest of the manual. Spelling fixes.
2022-09-29 07:43:01 -04:00
compute_dipole_chunk.rst
update version strings to 28 March 2023 for upcoming release
2023-03-25 06:14:52 -04:00
compute_dipole.rst
update version strings to 28 March 2023 for upcoming release
2023-03-25 06:14:52 -04:00
compute_displace_atom.rst
Fixed remaining discrepancies between lists of keywords and doc of them
2022-10-13 23:00:13 -05:00
compute_dpd_atom.rst
More math and code-block edits
2022-08-15 23:48:30 -05:00
compute_dpd.rst
More math and code-block edits
2022-08-15 23:48:30 -05:00
compute_edpd_temp_atom.rst
More math and code-block edits
2022-08-15 23:48:30 -05:00
compute_efield_atom.rst
More math and code-block edits
2022-08-15 23:48:30 -05:00
compute_efield_wolf_atom.rst
update versions strings for the next feature release
2023-02-03 11:39:50 -05:00
compute_entropy_atom.rst
make \AA macro available in :math: for HTML and PDF
2022-10-01 20:58:48 -04:00
compute_erotate_asphere.rst
reorder punctuation and quotation characters for clarity
2022-09-12 19:02:46 -04:00
compute_erotate_rigid.rst
reorder punctuation and quotation characters for clarity
2022-09-12 19:02:46 -04:00
compute_erotate_sphere_atom.rst
More math and code-block edits
2022-08-15 23:48:30 -05:00
compute_erotate_sphere.rst
KOKKOS updates
2023-04-18 22:01:39 -04:00
compute_event_displace.rst
reorder punctuation and quotation characters for clarity
2022-09-12 19:02:46 -04:00
compute_fabric.rst
Fixing mistakes in doc pages
2023-05-25 12:58:57 -06:00
compute_fep_ta.rst
add some more versionadded tags, now mostly complete for 2022
2022-09-25 09:41:55 -04:00
compute_fep.rst
reorder punctuation and quotation characters for clarity
2022-09-12 19:02:46 -04:00
compute_global_atom.rst
Math replacements; code-block LAMMPS; clarity and parsing-friendly edits
2022-08-16 20:29:12 -05:00
compute_group_group.rst
reorder punctuation and quotation characters for clarity
2022-09-12 19:02:46 -04:00
compute_gyration_chunk.rst
Math replacements; code-block LAMMPS; clarity and parsing-friendly edits
2022-08-16 20:29:12 -05:00
compute_gyration_shape_chunk.rst
reorder punctuation and quotation characters for clarity
2022-09-12 19:02:46 -04:00
compute_gyration_shape.rst
reorder punctuation and quotation characters for clarity
2022-09-12 19:02:46 -04:00
compute_gyration.rst
reorder punctuation and quotation characters for clarity
2022-09-12 19:02:46 -04:00
compute_heat_flux.rst
reorder punctuation and quotation characters for clarity
2022-09-12 19:02:46 -04:00
compute_hexorder_atom.rst
Math replacements; code-block LAMMPS; clarity and parsing-friendly edits
2022-08-16 20:29:12 -05:00
compute_hma.rst
reorder punctuation and quotation characters for clarity
2022-09-12 19:02:46 -04:00
compute_improper_local.rst
Math replacements; code-block LAMMPS; clarity and parsing-friendly edits
2022-08-16 20:29:12 -05:00
compute_improper.rst
Math replacements; code-block LAMMPS; clarity and parsing-friendly edits
2022-08-16 20:29:12 -05:00
compute_inertia_chunk.rst
reorder punctuation and quotation characters for clarity
2022-09-12 19:02:46 -04:00
compute_ke_atom_eff.rst
Math replacements; code-block LAMMPS; clarity and parsing-friendly edits
2022-08-16 20:29:12 -05:00
compute_ke_atom.rst
Math replacements; code-block LAMMPS; clarity and parsing-friendly edits
2022-08-16 20:29:12 -05:00
compute_ke_eff.rst
Math replacements; code-block LAMMPS; clarity and parsing-friendly edits
2022-08-16 20:29:12 -05:00
compute_ke_rigid.rst
reorder punctuation and quotation characters for clarity
2022-09-12 19:02:46 -04:00
compute_ke.rst
reorder punctuation and quotation characters for clarity
2022-09-12 19:02:46 -04:00
compute_mliap.rst
Math replacements; code-block LAMMPS; clarity and parsing-friendly edits
2022-08-16 20:29:12 -05:00
compute_modify.rst
use dynamic/dof and extra/dof consistently. remove compatibility note in docs.
2023-06-30 16:27:07 -04:00
compute_momentum.rst
reorder punctuation and quotation characters for clarity
2022-09-12 19:02:46 -04:00
compute_msd_chunk.rst
getting out of the insurance business :-)
2023-01-23 16:45:41 -05:00
compute_msd_nongauss.rst
reorder punctuation and quotation characters for clarity
2022-09-12 19:02:46 -04:00
compute_msd.rst
reorder punctuation and quotation characters for clarity
2022-09-12 19:02:46 -04:00
compute_nbond_atom.rst
add .. versiondded:: tag to BPM package commands and restrictions text consistent
2022-11-07 22:57:32 -05:00
compute_omega_chunk.rst
reorder punctuation and quotation characters for clarity
2022-09-12 19:02:46 -04:00
compute_orientorder_atom.rst
After running "make fix-whitespace"
2022-08-22 21:41:12 -05:00
compute_pair_local.rst
Adding option to doc files, clarifying normal forces in compute pair/bond local
2023-05-19 13:51:53 -06:00
compute_pair.rst
merged in develop
2022-09-07 14:12:26 -06:00
compute_pe_atom.rst
Math replacements; code-block LAMMPS; clarity and parsing-friendly edits
2022-08-16 20:29:12 -05:00
compute_pe.rst
reorder punctuation and quotation characters for clarity
2022-09-12 19:02:46 -04:00
compute_plasticity_atom.rst
reorder punctuation and quotation characters for clarity
2022-09-12 19:02:46 -04:00
compute_pressure_alchemy.rst
update version strings to 28 March 2023 for upcoming release
2023-03-25 06:14:52 -04:00
compute_pressure_uef.rst
Math replacements; code-block LAMMPS; clarity and parsing-friendly edits
2022-08-16 20:29:12 -05:00
compute_pressure.rst
revise based on suggestions from languagetool.org
2023-01-22 09:50:27 -05:00
compute_property_atom.rst
remove Fortran library based MESONT styles and the library itself
2023-01-20 19:12:42 -05:00
compute_property_chunk.rst
Update from master
2022-10-12 09:49:55 -06:00
compute_property_grid.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
compute_property_local.rst
Update from master
2022-10-12 09:49:55 -06:00
compute_ptm_atom.rst
consistently apply \vec{} macro to only the first text/character and not subscripts
2023-04-13 20:06:35 -04:00
compute_rdf.rst
use dynamic/dof and extra/dof consistently. remove compatibility note in docs.
2023-06-30 16:27:07 -04:00
compute_reduce_chunk.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
compute_reduce.rst
whitespace
2023-04-12 17:21:02 -04:00
compute_rigid_local.rst
make compute rigid/local consistent with other "possible attributes" docs
2022-10-17 14:51:10 -05:00
compute_saed.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
compute_slice.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
compute_smd_contact_radius.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
compute_smd_damage.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
compute_smd_hourglass_error.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
compute_smd_internal_energy.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
compute_smd_plastic_strain_rate.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
compute_smd_plastic_strain.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
compute_smd_rho.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
compute_smd_tlsph_defgrad.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
compute_smd_tlsph_dt.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
compute_smd_tlsph_num_neighs.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
compute_smd_tlsph_shape.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
compute_smd_tlsph_strain_rate.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
compute_smd_tlsph_strain.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
compute_smd_tlsph_stress.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
compute_smd_triangle_vertices.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
compute_smd_ulsph_effm.rst
fix a bunch more broken links
2023-02-19 20:48:54 -05:00
compute_smd_ulsph_num_neighs.rst
fix a bunch more broken links
2023-02-19 20:48:54 -05:00
compute_smd_ulsph_strain_rate.rst
fix a bunch more broken links
2023-02-19 20:48:54 -05:00
compute_smd_ulsph_strain.rst
fix a bunch more broken links
2023-02-19 20:48:54 -05:00
compute_smd_ulsph_stress.rst
fix a bunch more broken links
2023-02-19 20:48:54 -05:00
compute_smd_vol.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
compute_sna_atom.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
compute_sph_e_atom.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
compute_sph_rho_atom.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
compute_sph_t_atom.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
compute_spin.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
compute_stress_atom.rst
add example for a 1-d pressure profile
2022-08-29 17:04:48 -04:00
compute_stress_cartesian.rst
Merge pull request #3818 from akohlmey/next_release
2023-06-15 14:30:40 -04:00
compute_stress_curvilinear.rst
documentation formatting and spelling fixes
2023-06-14 22:08:30 -04:00
compute_stress_mop.rst
update version strings for upcoming release
2023-06-14 21:50:27 -04:00
compute_tally.rst
document additional pair style restrictions for /tally computes
2023-04-26 14:57:50 -04:00
compute_tdpd_cc_atom.rst
More cosmetic edits to documentation
2022-08-18 19:25:06 -05:00
compute_temp_asphere.rst
use dynamic/dof and extra/dof consistently. remove compatibility note in docs.
2023-06-30 16:27:07 -04:00
compute_temp_body.rst
use dynamic/dof and extra/dof consistently. remove compatibility note in docs.
2023-06-30 16:27:07 -04:00
compute_temp_chunk.rst
reorder punctuation and quotation characters for clarity
2022-09-12 19:02:46 -04:00
compute_temp_com.rst
reorder punctuation and quotation characters for clarity
2022-09-12 19:02:46 -04:00
compute_temp_cs.rst
correct inconsistent spelling of name
2022-09-23 10:33:44 -04:00
compute_temp_deform_eff.rst
reorder punctuation and quotation characters for clarity
2022-09-12 19:02:46 -04:00
compute_temp_deform.rst
reorder punctuation and quotation characters for clarity
2022-09-12 19:02:46 -04:00
compute_temp_drude.rst
use dynamic/dof and extra/dof consistently. remove compatibility note in docs.
2023-06-30 16:27:07 -04:00
compute_temp_eff.rst
reorder punctuation and quotation characters for clarity
2022-09-12 19:02:46 -04:00
compute_temp_partial.rst
reorder punctuation and quotation characters for clarity
2022-09-12 19:02:46 -04:00
compute_temp_profile.rst
reorder punctuation and quotation characters for clarity
2022-09-12 19:02:46 -04:00
compute_temp_ramp.rst
make \AA macro available in :math: for HTML and PDF
2022-10-01 20:58:48 -04:00
compute_temp_region_eff.rst
reorder punctuation and quotation characters for clarity
2022-09-12 19:02:46 -04:00
compute_temp_region.rst
reorder punctuation and quotation characters for clarity
2022-09-12 19:02:46 -04:00
compute_temp_rotate.rst
reorder punctuation and quotation characters for clarity
2022-09-12 19:02:46 -04:00
compute_temp_sphere.rst
use dynamic/dof and extra/dof consistently. remove compatibility note in docs.
2023-06-30 16:27:07 -04:00
compute_temp_uef.rst
Finished edits on computes (whew!); builds with no errors or warnings
2022-08-19 00:25:06 -05:00
compute_temp.rst
clarify the temperature computation in compute temp
2023-06-27 17:53:06 -04:00
compute_ti.rst
reorder punctuation and quotation characters for clarity
2022-09-12 19:02:46 -04:00
compute_torque_chunk.rst
reorder punctuation and quotation characters for clarity
2022-09-12 19:02:46 -04:00
compute_vacf.rst
reorder punctuation and quotation characters for clarity
2022-09-12 19:02:46 -04:00
compute_vcm_chunk.rst
reorder punctuation and quotation characters for clarity
2022-09-12 19:02:46 -04:00
compute_viscosity_cos.rst
reorder punctuation and quotation characters for clarity
2022-09-12 19:02:46 -04:00
compute_voronoi_atom.rst
Fixed remaining discrepancies between lists of keywords and doc of them
2022-10-13 23:00:13 -05:00
compute_xrd.rst
make \AA macro available in :math: for HTML and PDF
2022-10-01 20:58:48 -04:00
compute.rst
Fix doc links
2023-06-14 15:04:46 +02:00
computes.rst
…
Cplusplus.rst
…
create_atoms.rst
add versionadded tag to "maxtry" option
2023-02-06 11:12:02 -05:00
create_bonds.rst
update docs for create_bonds
2023-06-28 10:06:31 -04:00
create_box.rst
update documentation for removal of box command
2022-11-21 14:04:58 -05:00
delete_atoms.rst
fix sphinx formatting issue
2022-11-28 14:00:26 -05:00
delete_bonds.rst
Fixed remaining discrepancies between lists of keywords and doc of them
2022-10-13 23:00:13 -05:00
Developer_atom.rst
spelling
2023-05-04 16:04:08 -04:00
Developer_code_design.rst
starting grammar, punctuation, and spelling review for developer info sections
2023-02-04 22:00:35 -05:00
Developer_comm_ops.rst
fix a bunch more broken links
2023-02-19 20:48:54 -05:00
Developer_flow.rst
starting grammar, punctuation, and spelling review for developer info sections
2023-02-04 22:00:35 -05:00
Developer_grid.rst
starting grammar, punctuation, and spelling review for developer info sections
2023-02-04 22:00:35 -05:00
Developer_notes.rst
implement suggestions from @jtclemm
2023-03-21 21:36:27 -04:00
Developer_org.rst
starting grammar, punctuation, and spelling review for developer info sections
2023-02-04 22:00:35 -05:00
Developer_par_comm.rst
starting grammar, punctuation, and spelling review for developer info sections
2023-02-04 22:00:35 -05:00
Developer_par_long.rst
starting grammar, punctuation, and spelling review for developer info sections
2023-02-04 22:00:35 -05:00
Developer_par_neigh.rst
starting grammar, punctuation, and spelling review for developer info sections
2023-02-04 22:00:35 -05:00
Developer_par_openmp.rst
starting grammar, punctuation, and spelling review for developer info sections
2023-02-04 22:00:35 -05:00
Developer_par_part.rst
starting grammar, punctuation, and spelling review for developer info sections
2023-02-04 22:00:35 -05:00
Developer_parallel.rst
revise based on suggestions from languagetool.org
2023-01-22 09:50:27 -05:00
Developer_platform.rst
implement and use a platform neutral abstraction of unsetenv(3)
2021-11-03 10:53:45 -04:00
Developer_plugins.rst
use consistent pygments language tags
2022-12-04 16:59:17 -05:00
Developer_unittest.rst
make code-block formatting more consistent and align with documented conventions
2022-12-30 06:46:09 -05:00
Developer_updating.rst
update version strings to 28 March 2023 for upcoming release
2023-03-25 06:14:52 -04:00
Developer_utils.rst
fix a bunch more broken links
2023-02-19 20:48:54 -05:00
Developer_write_fix.rst
a few possible typos
2023-03-21 21:32:20 -06:00
Developer_write_pair.rst
spelling
2023-03-25 06:08:43 -04:00
Developer_write.rst
sync with develop
2023-03-29 14:48:24 -06:00
Developer.rst
Start document about per-atom properties and atom data access
2023-05-04 15:57:11 -04:00
dielectric.rst
Edits to documentation files for consistency and math
2022-08-19 23:49:44 -05:00
dihedral_charmm.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
dihedral_class2.rst
…
dihedral_coeff.rst
more formatting/typesetting consistency
2022-09-03 04:17:22 -04:00
dihedral_cosine_shift_exp.rst
move some styles around
2021-07-09 16:54:00 -04:00
dihedral_fourier.rst
correct package designations for styles in the EXTRA-MOLECULES package
2021-08-22 11:27:48 -04:00
dihedral_harmonic.rst
…
dihedral_helix.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
dihedral_hybrid.rst
update docs for hybrid style updates
2021-08-02 21:53:31 -04:00
dihedral_lepton.rst
update versions strings for the next feature release
2023-02-03 11:39:50 -05:00
dihedral_multi_harmonic.rst
…
dihedral_nharmonic.rst
fix typo
2022-12-26 16:47:37 -05:00
dihedral_none.rst
…
dihedral_opls.rst
…
dihedral_quadratic.rst
correct package designations for styles in the EXTRA-MOLECULES package
2021-08-22 11:27:48 -04:00
dihedral_spherical.rst
correct package designations for styles in the EXTRA-MOLECULES package
2021-08-22 11:27:48 -04:00
dihedral_style.rst
add missing entries for dihedral style lepton
2022-12-27 21:13:34 -05:00
dihedral_table.rst
getting out of the insurance business :-)
2023-01-23 16:45:41 -05:00
dihedral_write.rst
update versions strings for the next feature release
2023-02-03 11:39:50 -05:00
dihedral_zero.rst
Updates documentation files to make them more consistent and some typo fixes (round 1)
2022-08-05 23:03:09 -05:00
dihedrals.rst
…
dimension.rst
Edits to documentation files for consistency and math
2022-08-19 23:49:44 -05:00
displace_atoms.rst
make \AA macro available in :math: for HTML and PDF
2022-10-01 20:58:48 -04:00
dump_adios.rst
Math replacements and cosmetic edits to documentation
2022-09-01 01:01:46 -05:00
dump_cfg_uef.rst
Math replacements and cosmetic edits to documentation
2022-09-01 01:01:46 -05:00
dump_h5md.rst
convert URLs to https where possible, check URLs for bit rot and update or remove
2022-09-24 08:02:18 -04:00
dump_image.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
dump_modify.rst
update docs
2023-06-07 15:28:35 -04:00
dump_molfile.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
dump_netcdf.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
dump_vtk.rst
getting out of the insurance business :-)
2023-01-23 16:45:41 -05:00
dump.rst
Merge branch 'develop' into gran-temp
2023-03-16 17:44:36 -04:00
dumps.rst
also index dump styles
2022-07-15 22:58:49 -04:00
dynamical_matrix.rst
small doc style update
2023-07-15 12:36:41 -04:00
echo.rst
Minor edits to doc pages for echo group if
2022-08-21 22:19:30 -05:00
Errors_bugs.rst
remove references to the mailing list in the manual and replace with forum link, if needed
2022-03-29 07:01:00 -04:00
Errors_common.rst
getting out of the insurance business :-)
2023-01-23 16:45:41 -05:00
Errors_debug.rst
fix outdated or broken URLs and typos in URLs
2023-02-19 16:11:22 -05:00
Errors_details.rst
add documentation for new error and warning policy
2022-04-23 16:40:28 -04:00
Errors_messages.rst
fix spelling errors
2023-01-23 17:46:33 -05:00
Errors_warnings.rst
getting out of the insurance business :-)
2023-01-23 16:45:41 -05:00
Errors.rst
add utility to print url with pointer to error message
2022-04-22 05:25:50 -04:00
Examples.rst
remove all files and dirs relevant to the fix latte command
2023-02-24 16:13:50 -07:00
fitpod_command.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_accelerate_cos.rst
Math replacements and cosmetic edits to documentation
2022-09-01 01:01:46 -05:00
fix_acks2_reaxff.rst
make \AA macro available in :math: for HTML and PDF
2022-10-01 20:58:48 -04:00
fix_adapt_fep.rst
reorder punctuation and quotation characters for clarity
2022-09-12 19:02:46 -04:00
fix_adapt.rst
updated doc for kim adapt
2023-05-09 09:24:53 -05:00
fix_addforce.rst
getting out of the insurance business :-)
2023-01-23 16:45:41 -05:00
fix_addtorque.rst
reorder punctuation and quotation characters for clarity
2022-09-12 19:02:46 -04:00
fix_alchemy.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_amoeba_bitorsion.rst
reorder punctuation and quotation characters for clarity
2022-09-12 19:02:46 -04:00
fix_amoeba_pitorsion.rst
reorder punctuation and quotation characters for clarity
2022-09-12 19:02:46 -04:00
fix_append_atoms.rst
make \AA macro available in :math: for HTML and PDF
2022-10-01 20:58:48 -04:00
fix_atc.rst
reorder punctuation and quotation characters for clarity
2022-09-12 19:02:46 -04:00
fix_atom_swap.rst
clarify and reformat
2022-12-26 06:34:53 -05:00
fix_ave_atom.rst
reorder punctuation and quotation characters for clarity
2022-09-12 19:02:46 -04:00
fix_ave_chunk.rst
remove whitespace
2022-11-07 16:18:40 -07:00
fix_ave_correlate_long.rst
Document the useage of variable vectors in fix ave/correlate/long
2023-03-27 09:11:52 +02:00
fix_ave_correlate.rst
reorder punctuation and quotation characters for clarity
2022-09-12 19:02:46 -04:00
fix_ave_grid.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_ave_histo.rst
Missing keyword in fix_ave_histo doc
2022-10-13 14:48:26 -05:00
fix_ave_spatial_sphere.rst
fix a bunch more broken links
2023-02-19 20:48:54 -05:00
fix_ave_spatial.rst
fix a bunch more broken links
2023-02-19 20:48:54 -05:00
fix_ave_time.rst
missing format keyword in fix ave/time doc
2022-10-13 14:51:30 -05:00
fix_aveforce.rst
Math-related edits and code-block swaps; checkd builds for pdf and html docs
2022-09-02 17:44:45 -05:00
fix_balance.rst
fix spelling issues
2023-03-07 19:41:50 -05:00
fix_bocs.rst
removed an extra space
2022-10-14 18:27:21 -05:00
fix_bond_break.rst
Missed one I->i edit
2022-10-14 18:04:49 -05:00
fix_bond_create.rst
Updated docs for fixes bond/break, bond/create, and bond/react for math/etc.
2022-10-14 17:40:22 -05:00
fix_bond_react.rst
Merge pull request #3569 from jrgissing/type-labels-bond/react-examples
2023-01-05 19:22:43 -05:00
fix_bond_swap.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_box_relax.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_brownian.rst
Fixed a couple more mathbf->boldsymbol errors in fix brownian doc
2022-10-15 10:47:33 -05:00
fix_charge_regulation.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_cmap.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_colvars.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_controller.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_damping_cundall.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_deform.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_deposit.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_dpd_energy.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_dpd_source.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_drag.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_drude_transform.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_drude.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_dt_reset.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_efield.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_ehex.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_electrode.rst
update version tag placeholders for added, removed, or changed functionality
2022-12-19 22:11:06 -05:00
fix_electron_stopping.rst
Merge branch 'develop' into doc-fixes
2023-07-12 11:41:15 -04:00
fix_enforce2d.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_eos_cv.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_eos_table_rx.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_eos_table.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_evaporate.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_external.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_ffl.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_filter_corotate.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_flow_gauss.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_freeze.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_gcmc.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_gld.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_gle.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_gravity.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_grem.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_halt.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_heat_flow.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_heat.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_hyper_global.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_hyper_local.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_imd.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_indent.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_ipi.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_langevin_drude.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_langevin_eff.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_langevin_spin.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_langevin.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_lb_fluid.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_lb_momentum.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_lb_viscous.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_lineforce.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_manifoldforce.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_mdi_qm.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_mdi_qmmm.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_meso_move.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_modify_atc_commands.rst
…
fix_modify.rst
use dynamic/dof and extra/dof consistently. remove compatibility note in docs.
2023-06-30 16:27:07 -04:00
fix_mol_swap.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_momentum.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_move.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_mscg.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_msst.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_mvv_dpd.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_neb_spin.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_neb.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_nh_eff.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_nh_uef.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_nh.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_nph_asphere.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_nph_body.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_nph_sphere.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_nphug.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_npt_asphere.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_npt_body.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_npt_cauchy.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_npt_sphere.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_numdiff_virial.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_numdiff.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_nve_asphere_noforce.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_nve_asphere.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_nve_awpmd.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_nve_body.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_nve_bpm_sphere.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_nve_dot.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_nve_dotc_langevin.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_nve_eff.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_nve_limit.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_nve_line.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_nve_manifold_rattle.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_nve_noforce.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_nve_sphere.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_nve_spin.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_nve_tri.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_nve.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_nvk.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_nvt_asphere.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_nvt_body.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_nvt_manifold_rattle.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_nvt_sllod_eff.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_nvt_sllod.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_nvt_sphere.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_oneway.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_orient_eco.rst
fix a few typos with :doc: references
2022-09-04 17:27:32 -04:00
fix_orient.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_pafi.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_pair.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_phonon.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_pimd.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_planeforce.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_plumed.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_poems.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_polarize.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_pour.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_precession_spin.rst
consistently apply \vec{} macro to only the first text/character and not subscripts
2023-04-13 20:06:35 -04:00
fix_press_berendsen.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_print.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_propel_self.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_property_atom.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_python_invoke.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_python_move.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_qbmsst.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_qeq_comb.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_qeq_reaxff.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_qeq.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_qmmm.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_qtb.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_reaxff_bonds.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_reaxff_species.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_recenter.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_restrain.rst
consistently use prefactor instead of pre-factor (the former was more common)
2022-05-17 16:20:10 -04:00
fix_rhok.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_rigid_meso.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_rigid.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_rx.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_saed_vtk.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_setforce.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_sgcmc.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_shake.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_shardlow.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_smd_adjust_dt.rst
fix a bunch more broken links
2023-02-19 20:48:54 -05:00
fix_smd_integrate_tlsph.rst
fix a bunch more broken links
2023-02-19 20:48:54 -05:00
fix_smd_integrate_ulsph.rst
fix a bunch more broken links
2023-02-19 20:48:54 -05:00
fix_smd_move_triangulated_surface.rst
fix a bunch more broken links
2023-02-19 20:48:54 -05:00
fix_smd_setvel.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_smd_wall_surface.rst
fix a bunch more broken links
2023-02-19 20:48:54 -05:00
fix_smd.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_sph_stationary.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_sph.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_spring_chunk.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_spring_rg.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_spring_self.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_spring.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_srd.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_store_force.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_store_state.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_temp_berendsen.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_temp_csvr.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_temp_rescale_eff.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_temp_rescale.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_tfmc.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_tgnh_drude.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_thermal_conductivity.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_ti_spring.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_tmd.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_ttm.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_tune_kspace.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_vector.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_viscosity.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_viscous_sphere.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_viscous.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_wall_body_polygon.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_wall_body_polyhedron.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_wall_ees.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_wall_gran_region.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_wall_gran.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_wall_piston.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_wall_reflect_stochastic.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_wall_reflect.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_wall_region.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_wall_srd.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_wall.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_widom.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix.rst
Merge branch 'develop' into pimd_langevin
2023-05-17 17:30:49 -04:00
fixes.rst
…
Fortran.rst
remove obsolete Fortran interfaces from examples/COUPLE folder
2023-06-17 18:31:11 -04:00
group2ndx.rst
there is no mandatory group-ID for both commands
2023-07-12 12:27:15 -04:00
group.rst
fix outdated or broken URLs and typos in URLs
2023-02-19 16:11:22 -05:00
Howto_2d.rst
fix typos
2023-07-12 20:48:36 -04:00
Howto_amoeba.rst
drop a few more command prompt characters
2023-01-06 00:00:14 -05:00
Howto_barostat.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
Howto_bioFF.rst
convert URLs to https where possible, check URLs for bit rot and update or remove
2022-09-24 08:02:18 -04:00
Howto_body.rst
fix miscalculated example
2022-05-20 01:06:21 -04:00
Howto_bpm.rst
enforce all special_bonds weights to be 1.0 when overlay/pair is used
2023-07-12 11:37:17 -06:00
Howto_broken_bonds.rst
spelling
2023-05-04 16:04:08 -04:00
Howto_chunk.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
Howto_cmake.rst
more revisions based on suggestions from languagetool.org
2023-01-22 16:53:39 -05:00
Howto_coreshell.rst
getting out of the insurance business :-)
2023-01-23 16:45:41 -05:00
Howto_couple.rst
some more documentation updates
2023-03-29 17:48:16 -04:00
Howto_diffusion.rst
…
Howto_dispersion.rst
…
Howto_drude2.rst
Consolidate "Jiang" citations
2021-12-06 14:07:36 -05:00
Howto_drude.rst
…
Howto_elastic.rst
Added some self-citations for key contributors
2022-02-25 17:03:45 -07:00
Howto_github.rst
update manual for revised release and branch names
2023-02-10 00:50:36 -05:00
Howto_granular.rst
Updating doc/examples, moving forward comm to pre_force
2023-02-15 11:00:19 -07:00
Howto_grid.rst
revise based on suggestions from languagetool.org
2023-01-22 09:50:27 -05:00
Howto_kappa.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
Howto_library.rst
revise a chunk of Howto pages with the help of languagetool.org
2023-02-05 18:09:36 -05:00
Howto_manifold.rst
convert URLs to https where possible, check URLs for bit rot and update or remove
2022-09-24 08:02:18 -04:00
Howto_mdi.rst
add versionadded tag for fix mdi/qmmm
2023-03-12 17:19:50 -04:00
Howto_multiple.rst
revise a chunk of Howto pages with the help of languagetool.org
2023-02-05 18:09:36 -05:00
Howto_nemd.rst
…
Howto_output.rst
some more languagtool.org suggested updates
2023-01-23 05:15:34 -05:00
Howto_peri.rst
revise based on suggestions from languagetool.org
2023-01-22 09:50:27 -05:00
Howto_polarizable.rst
bulk rename of remaining USER- packages
2021-06-29 20:12:59 -04:00
Howto_pylammps.rst
more revisions based on suggestions from languagetool.org
2023-01-22 16:53:39 -05:00
Howto_replica.rst
revise a chunk of Howto pages with the help of languagetool.org
2023-02-05 18:09:36 -05:00
Howto_restart.rst
revise a chunk of Howto pages with the help of languagetool.org
2023-02-05 18:09:36 -05:00
Howto_spc.rst
make rigid water examples more realistic and consistent. avoid warnings.
2023-05-25 18:08:42 -04:00
Howto_spherical.rst
getting out of the insurance business :-)
2023-01-23 16:45:41 -05:00
Howto_spins.rst
whitespace
2022-09-26 13:12:04 -04:00
Howto_structured_data.rst
use consistent pygments language tags
2022-12-04 16:59:17 -05:00
Howto_temperature.rst
…
Howto_thermostat.rst
integrate platform sub-namespace into source code and documentation
2021-10-02 16:55:11 -04:00
Howto_tip3p.rst
make rigid water examples more realistic and consistent. avoid warnings.
2023-05-25 18:08:42 -04:00
Howto_tip4p.rst
make rigid water examples more realistic and consistent. avoid warnings.
2023-05-25 18:08:42 -04:00
Howto_tip5p.rst
make rigid water examples more realistic and consistent. avoid warnings.
2023-05-25 18:08:42 -04:00
Howto_triclinic.rst
revise based on suggestions from languagetool.org
2023-01-22 09:50:27 -05:00
Howto_type_labels.rst
update versions strings for the next patch release
2022-09-14 16:29:10 -04:00
Howto_viscosity.rst
formatting corrections and minor tweaks to the Argon viscosity howto
2022-07-01 09:26:23 -04:00
Howto_viz.rst
revise a chunk of Howto pages with the help of languagetool.org
2023-02-05 18:09:36 -05:00
Howto_walls.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
Howto_wsl.rst
fix a bunch more broken links
2023-02-19 20:48:54 -05:00
Howto.rst
Minor changes to the style/contribute modify pages
2023-04-24 14:31:18 -06:00
hyper.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
if.rst
getting out of the insurance business :-)
2023-01-23 16:45:41 -05:00
improper_amoeba.rst
Bugfix amoeba doc header
2023-03-28 11:15:29 +02:00
improper_class2.rst
…
improper_coeff.rst
more formatting/typesetting consistency
2022-09-03 04:17:22 -04:00
improper_cossq.rst
move some styles around
2021-07-09 16:54:00 -04:00
improper_cvff.rst
…
improper_distance.rst
move some styles around
2021-07-09 16:54:00 -04:00
improper_distharm.rst
bulk rename of remaining USER- packages
2021-06-29 20:12:59 -04:00
improper_fourier.rst
move some styles around
2021-07-09 16:54:00 -04:00
improper_harmonic.rst
avoid duplication of Accelerator package info in additional doc pages
2021-10-11 16:49:59 -06:00
improper_hybrid.rst
Updates documentation files to make them more consistent and some typo fixes (round 1)
2022-08-05 23:03:09 -05:00
improper_inversion_harmonic.rst
bulk rename of remaining USER- packages
2021-06-29 20:12:59 -04:00
improper_none.rst
…
improper_ring.rst
move some styles around
2021-07-09 16:54:00 -04:00
improper_sqdistharm.rst
move some styles around
2021-07-09 16:54:00 -04:00
improper_style.rst
doc pages for AMOEBA/HIPPO
2022-04-18 16:38:41 -06:00
improper_umbrella.rst
…
improper_zero.rst
…
impropers.rst
…
include.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
info.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
Install_conda.rst
use macOS consistently (missed a few places in the last round)
2023-05-06 22:40:58 -04:00
Install_git.rst
fix outdated or broken URLs and typos in URLs
2023-02-19 16:11:22 -05:00
Install_linux.rst
Update URL for EPEL
2023-03-16 21:23:02 -04:00
Install_mac.rst
use macOS consistently (missed a few places in the last round)
2023-05-06 22:40:58 -04:00
Install_tarball.rst
clarify download info
2023-05-06 22:40:58 -04:00
Install_windows.rst
fix spelling issues
2023-03-07 19:41:50 -05:00
Install.rst
more revisions based on suggestions from languagetool.org
2023-01-22 16:53:39 -05:00
Intro_authors.rst
some updates
2023-01-20 22:48:36 -05:00
Intro_citing.rst
fix outdated or broken URLs and typos in URLs
2023-02-19 16:11:22 -05:00
Intro_features.rst
Merge branch 'develop' into remove-fix-latte
2023-03-29 14:43:45 -06:00
Intro_nonfeatures.rst
fix outdated or broken URLs and typos in URLs
2023-02-19 16:11:22 -05:00
Intro_opensource.rst
convert URLs to https where possible, check URLs for bit rot and update or remove
2022-09-24 08:02:18 -04:00
Intro_overview.rst
revise based on suggestions from languagetool.org
2023-01-22 09:50:27 -05:00
Intro_portability.rst
fix broken link
2023-02-02 23:25:57 -05:00
Intro_website.rst
remove obsolete links, links to point back to the manual, updates
2023-01-20 22:50:18 -05:00
Intro.rst
add page about portability
2023-01-20 23:40:41 -05:00
jump.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
kim_commands.rst
small documentation improvements
2022-12-16 22:09:30 -05:00
kspace_modify.rst
resolve formatting issues and add a few style tweaks from languagetool.org
2023-05-08 05:52:18 -04:00
kspace_style.rst
rename doc file for all electrode fixes to fix_electrode.rst
2022-12-04 16:10:02 -05:00
label.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
labelmap.rst
reorder lines, so syntax highlighting does not get messed up
2023-01-06 10:07:05 -05:00
lattice.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
lepton_expression.rst
more documentation tweaks and corrections. make consistent across package styles
2022-12-24 15:38:58 -05:00
Library_add.rst
…
Library_atoms.rst
…
Library_config.rst
use consistent pygments language tags
2022-12-04 16:59:17 -05:00
Library_create.rst
use consistent pygments language tags
2022-12-04 16:59:17 -05:00
Library_execute.rst
use consistent pygments language tags
2022-12-04 16:59:17 -05:00
Library_neighbor.rst
…
Library_objects.rst
Finished docs for everything currently implemented
2022-09-29 09:14:49 -05:00
Library_properties.rst
add new library interface function to documentation
2023-06-08 09:45:12 -04:00
Library_scatter.rst
Update Library_scatter.rst
2023-01-26 11:00:26 +02:00
Library_utility.rst
Added lammps_fix_external_get_force to C library utility doc page
2022-11-29 15:56:26 -06:00
Library.rst
starting grammar, punctuation, and spelling review for developer info sections
2023-02-04 22:00:35 -05:00
log.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
Manual_version.rst
update manual for revised release and branch names
2023-02-10 00:50:36 -05:00
Manual.rst
Be more specific about web browser support after tests on browserstack.com
2023-04-22 06:15:16 -04:00
mass.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
mdi.rst
another doc page change
2023-02-24 16:27:15 -07:00
min_modify.rst
update versions strings for the next feature release
2023-02-03 11:39:50 -05:00
min_spin.rst
Correcting some aspects of the SPIN package documentation.
2022-09-26 07:43:19 +02:00
min_style.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
minimize.rst
small doc style update
2023-07-15 12:36:41 -04:00
Modify_atom.rst
update docs for adding atom styles to refactored process
2022-04-14 11:48:18 -04:00
Modify_body.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
Modify_bond.rst
expand docs for bond/angle/dihedral/improper styles
2022-11-07 23:52:23 -05:00
Modify_command.rst
…
Modify_compute.rst
bulk rename of remaining USER- packages
2021-06-29 20:12:59 -04:00
Modify_contribute.rst
minor editing changes
2023-05-12 11:18:07 -06:00
Modify_dump.rst
…
Modify_fix.rst
document missing call
2022-07-27 22:13:14 -04:00
Modify_gran_sub_mod.rst
fix spelling
2023-04-24 16:06:53 -04:00
Modify_kspace.rst
…
Modify_min.rst
…
Modify_overview.rst
minor editing changes
2023-05-12 11:18:07 -06:00
Modify_pair.rst
implement suggestions from @jtclemm
2023-03-21 21:36:27 -04:00
Modify_region.rst
…
Modify_requirements.rst
as a few details to the discussion of programming languages and their standards
2023-05-12 15:45:55 -04:00
Modify_style.rst
whitespace
2023-05-12 15:13:29 -04:00
Modify_thermo.rst
update documentation for modifying LAMMPS to reflect changes to Thermo class
2022-03-19 18:06:56 -04:00
Modify_variable.rst
update documentation for modifying LAMMPS to reflect changes to Thermo class
2022-03-19 18:06:56 -04:00
Modify.rst
minor editing changes
2023-05-12 11:18:07 -06:00
molecule.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
neb_spin.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
neb.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
neigh_modify.rst
getting out of the insurance business :-)
2023-01-23 16:45:41 -05:00
neighbor.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
newton.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
next.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
package.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
Packages_details.rst
remove all files and dirs relevant to the fix latte command
2023-02-24 16:13:50 -07:00
Packages_list.rst
remove all files and dirs relevant to the fix latte command
2023-02-24 16:13:50 -07:00
Packages.rst
more revisions based on suggestions from languagetool.org
2023-01-22 16:53:39 -05:00
pair_adp.rst
convert URLs to https where possible, check URLs for bit rot and update or remove
2022-09-24 08:02:18 -04:00
pair_agni.rst
avoid duplication of Accelerator package info in additional doc pages
2021-10-11 16:49:59 -06:00
pair_aip_water_2dm.rst
update version strings for upcoming release
2023-06-14 21:50:27 -04:00
pair_airebo.rst
make \AA macro available in :math: for HTML and PDF
2022-10-01 20:58:48 -04:00
pair_amoeba.rst
correct LaTeX formatting issues reported at https://matsci.org/t/latex-math-in-pair-amoeba-rst/47987/1
2023-04-13 20:06:35 -04:00
pair_atm.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_awpmd.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_beck.rst
forgot to move pair style beck to EXTRA-PAIR
2021-07-28 18:33:33 -04:00
pair_body_nparticle.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_body_rounded_polygon.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_body_rounded_polyhedron.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_bop.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_born_gauss.rst
update version string for release
2023-03-27 22:48:21 -04:00
pair_born.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_bpm_spring.rst
add .. versiondded:: tag to BPM package commands and restrictions text consistent
2022-11-07 22:57:32 -05:00
pair_brownian.rst
Updates documentation files to make them more consistent and some typo fixes (round 1)
2022-08-05 23:03:09 -05:00
pair_buck6d_coul_gauss.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_buck_long.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_buck.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_charmm.rst
use kcal consistently
2022-10-01 21:05:16 -04:00
pair_class2.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_coeff.rst
drop a few more command prompt characters
2023-01-06 00:00:14 -05:00
pair_colloid.rst
correct link
2023-04-06 11:42:19 -04:00
pair_comb.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_cosine_squared.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_coul_diel.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_coul_shield.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_coul_slater.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_coul_tt.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_coul.rst
fix typo and reformat
2022-12-07 20:41:33 -05:00
pair_cs.rst
update broken URLs
2022-09-26 12:09:45 -04:00
pair_dielectric.rst
fix spelling and table format issues. re-wrap paragraphs in doc sources.
2022-10-10 17:26:13 -04:00
pair_dipole.rst
consistently apply \vec{} macro to only the first text/character and not subscripts
2023-04-13 20:06:35 -04:00
pair_dpd_ext.rst
use more obvious pair style dpd thermostat examples
2023-05-08 11:51:30 -04:00
pair_dpd_fdt.rst
consistently apply \vec{} macro to only the first text/character and not subscripts
2023-04-13 20:06:35 -04:00
pair_dpd.rst
use more obvious pair style dpd thermostat examples
2023-05-08 11:51:30 -04:00
pair_drip.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_dsmc.rst
revise based on suggestions from languagetool.org
2023-01-22 09:50:27 -05:00
pair_e3b.rst
fix some docs formatting issues
2022-06-08 12:47:30 -04:00
pair_eam.rst
document the change in mass handling
2023-02-26 13:52:31 -05:00
pair_edip.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_eff.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_eim.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_exp6_rx.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_extep.rst
…
pair_fep_soft.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_gauss.rst
update version strings to 28 March 2023 for upcoming release
2023-03-25 06:14:52 -04:00
pair_gayberne.rst
getting out of the insurance business :-)
2023-01-23 16:45:41 -05:00
pair_gran.rst
Fixing argument errors and adding note on datafiles to doc
2022-09-19 22:14:59 -06:00
pair_granular.rst
typo
2023-07-06 14:06:31 -04:00
pair_gromacs.rst
convert URLs to https where possible, check URLs for bit rot and update or remove
2022-09-24 08:02:18 -04:00
pair_gw.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_harmonic_cut.rst
add some more versionadded tags, now mostly complete for 2022
2022-09-25 09:41:55 -04:00
pair_hbond_dreiding.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_hdnnp.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_hybrid.rst
link pair style hybrid/scaled to fix adapt and fix alchemy
2023-02-28 11:22:28 -05:00
pair_ilp_graphene_hbn.rst
add doc file
2023-05-18 22:00:03 +08:00
pair_ilp_tmd.rst
add doc file
2023-05-18 22:00:03 +08:00
pair_kim.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_kolmogorov_crespi_full.rst
add doc file
2023-05-18 22:00:03 +08:00
pair_kolmogorov_crespi_z.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_lcbop.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_lebedeva_z.rst
whitespace
2021-11-04 16:48:29 -04:00
pair_lepton.rst
update version strings for upcoming release
2023-06-14 21:50:27 -04:00
pair_line_lj.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_list.rst
correct implementation of quartic potential in pair style list
2022-10-21 02:25:40 -04:00
pair_lj96.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_lj_cubic.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_lj_cut_coul.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_lj_cut_sphere.rst
update version strings for upcoming release
2023-06-14 21:50:27 -04:00
pair_lj_cut_tip4p.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_lj_expand_sphere.rst
update version strings for upcoming release
2023-06-14 21:50:27 -04:00
pair_lj_expand.rst
add missing index entries
2023-02-02 15:06:22 -05:00
pair_lj_long.rst
update a citation
2022-04-12 12:59:25 -06:00
pair_lj_relres.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_lj_smooth_linear.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_lj_smooth.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_lj_switch3_coulgauss_long.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_lj.rst
show/explain alternate LJ potential using the minimum energy distance
2023-05-01 20:13:37 -04:00
pair_local_density.rst
correct docs for pair style local/density
2021-12-08 00:22:37 -05:00
pair_lubricate.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_lubricateU.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_mdf.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_meam_spline.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_meam_sw_spline.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_meam.rst
Minor typo in docs
2023-01-26 18:24:39 -07:00
pair_mesocnt.rst
remove Fortran library based MESONT styles and the library itself
2023-01-20 19:12:42 -05:00
pair_mesodpd.rst
implement documented pair style requirements for DPD-MESO intgreation fixes
2023-03-01 20:52:23 -05:00
pair_mgpt.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_mie.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_mliap.rst
Merge pull request #3511 from akohlmey/next_patch_release
2022-11-03 11:53:08 -04:00
pair_modify.rst
add versionadded/versionchanged markers for features from 15Sep2022 and 3Aug2022
2022-09-25 03:20:29 -04:00
pair_momb.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_morse.rst
minor tweaks
2022-12-22 15:49:11 -05:00
pair_multi_lucy_rx.rst
consistently use prefactor instead of pre-factor (the former was more common)
2022-05-17 16:20:10 -04:00
pair_multi_lucy.rst
consistently use prefactor instead of pre-factor (the former was more common)
2022-05-17 16:20:10 -04:00
pair_nb3b_harmonic.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_nm.rst
make consistent with other reference
2022-01-03 18:26:56 -05:00
pair_none.rst
revise based on suggestions from languagetool.org
2023-01-22 09:50:27 -05:00
pair_oxdna2.rst
Merge pull request #2924 from ohenrich/cg-dna
2021-09-07 14:12:07 -04:00
pair_oxdna.rst
Merge pull request #2924 from ohenrich/cg-dna
2021-09-07 14:12:07 -04:00
pair_oxrna2.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_pace.rst
Update pair_pace.rst
2023-04-13 11:01:04 +02:00
pair_peri.rst
reference the Howto from the rest of the manual. Spelling fixes.
2022-09-29 07:43:01 -04:00
pair_pod.rst
update version tag placeholders for added, removed, or changed functionality
2022-12-19 22:11:06 -05:00
pair_polymorphic.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_python.rst
add harmonic/cut to python example folder. small tweaks to docs and examples
2022-03-18 17:58:30 -04:00
pair_quip.rst
convert URLs to https where possible, check URLs for bit rot and update or remove
2022-09-24 08:02:18 -04:00
pair_rann.rst
Updates documentation files to make them more consistent and some typo fixes (round 1)
2022-08-05 23:03:09 -05:00
pair_reaxff.rst
more revisions based on suggestions from languagetool.org
2023-01-22 16:53:39 -05:00
pair_resquared.rst
getting out of the insurance business :-)
2023-01-23 16:45:41 -05:00
pair_saip_metal.rst
add doc file
2023-05-18 22:00:03 +08:00
pair_sdpd_taitwater_isothermal.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_smatb.rst
add some .. versionadded:: statements to indicate the version a feature was added
2022-08-01 03:54:39 -04:00
pair_smd_hertz.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_smd_tlsph.rst
fix a bunch more broken links
2023-02-19 20:48:54 -05:00
pair_smd_triangulated_surface.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_smd_ulsph.rst
fix a bunch more broken links
2023-02-19 20:48:54 -05:00
pair_smtbq.rst
whitespace
2023-04-18 21:49:55 -04:00
pair_snap.rst
Completed inner cutoff, KOKKOS still in progress
2022-04-21 17:30:12 -06:00
pair_soft.rst
consistently use prefactor instead of pre-factor (the former was more common)
2022-05-17 16:20:10 -04:00
pair_sph_heatconduction.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_sph_idealgas.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_sph_lj.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_sph_rhosum.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_sph_taitwater_morris.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_sph_taitwater.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_spica.rst
whitespace
2022-07-15 12:16:15 -04:00
pair_spin_dipole.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_spin_dmi.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_spin_exchange.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_spin_magelec.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_spin_neel.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_srp.rst
add versionadded/versionchanged markers for features from 15Sep2022 and 3Aug2022
2022-09-25 03:20:29 -04:00
pair_style.rst
various documentation updates
2023-06-06 16:08:50 -04:00
pair_sw_angle_table.rst
add some .. versionadded:: statements to indicate the version a feature was added
2022-08-01 03:54:39 -04:00
pair_sw.rst
fix broken link and clarify
2022-11-28 15:53:31 -05:00
pair_table_rx.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_table.rst
getting out of the insurance business :-)
2023-01-23 16:45:41 -05:00
pair_tersoff_mod.rst
fix issues due to incomplete conversion form txt2html markup
2023-03-03 17:25:28 -05:00
pair_tersoff_zbl.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_tersoff.rst
make documentation of a few pair styles more consistent with the rest
2021-11-29 15:57:11 -05:00
pair_thole.rst
make documentation of a few pair styles more consistent with the rest
2021-11-29 15:57:11 -05:00
pair_threebody_table.rst
add some .. versionadded:: statements to indicate the version a feature was added
2022-08-01 03:54:39 -04:00
pair_tracker.rst
fix typo
2022-12-10 09:59:49 -05:00
pair_tri_lj.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_ufm.rst
refer to temperature more consistently with :math:T instead of *T*
2022-08-23 05:26:07 -04:00
pair_vashishta.rst
make documentation of a few pair styles more consistent with the rest
2021-11-29 15:57:11 -05:00
pair_wf_cut.rst
offset is not used (by construction of the potential)
2022-08-05 07:20:44 -04:00
pair_write.rst
update comment about pair_write restrictions
2022-01-21 10:47:49 -05:00
pair_ylz.rst
fix broken doc links
2023-03-04 17:03:07 -05:00
pair_yukawa_colloid.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_yukawa.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_zbl.rst
make \AA macro available in :math: for HTML and PDF
2022-10-01 20:58:48 -04:00
pair_zero.rst
getting out of the insurance business :-)
2023-01-23 16:45:41 -05:00
pairs.rst
…
partition.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
plugin.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
prd.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
print.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
processors.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
Python_atoms.rst
revise based on suggestions from languagetool.org
2023-01-22 09:50:27 -05:00
Python_call.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
Python_config.rst
use consistent pygments language tags
2022-12-04 16:59:17 -05:00
Python_create.rst
use consistent pygments language tags
2022-12-04 16:59:17 -05:00
Python_error.rst
use consistent pygments language tags
2022-12-04 16:59:17 -05:00
Python_examples.rst
more revisions based on suggestions from languagetool.org
2023-01-22 16:53:39 -05:00
Python_execute.rst
use consistent pygments language tags
2022-12-04 16:59:17 -05:00
Python_ext.rst
…
Python_formats.rst
…
Python_head.rst
convert URLs to https where possible, check URLs for bit rot and update or remove
2022-09-24 08:02:18 -04:00
Python_install.rst
update docs for python package installation and building of wheel file
2023-03-24 18:02:01 -04:00
Python_launch.rst
getting out of the insurance business :-)
2023-01-23 16:45:41 -05:00
Python_module.rst
…
Python_neighbor.rst
Fix whitespace
2022-10-03 12:45:18 -06:00
Python_objects.rst
use consistent pygments language tags
2022-12-04 16:59:17 -05:00
Python_overview.rst
make code-block formatting more consistent and align with documented conventions
2022-12-30 06:46:09 -05:00
Python_properties.rst
add missing documentation
2023-06-10 07:45:52 -06:00
Python_run.rst
…
Python_scatter.rst
use consistent pygments language tags
2022-12-04 16:59:17 -05:00
Python_trouble.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
python.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
quit.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
read_data.rst
fix issues due to incomplete conversion form txt2html markup
2023-03-03 17:25:28 -05:00
read_dump.rst
use correct spelling for semicolon
2023-05-08 05:54:33 -04:00
read_restart.rst
document removal of remap option for read_restart
2022-12-15 16:34:38 -05:00
region.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
replicate.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
rerun.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
reset_atoms.rst
update version tag placeholders for added, removed, or changed functionality
2022-12-19 22:11:06 -05:00
reset_timestep.rst
remove NULL option for reset_timestep
2022-05-04 16:21:06 -04:00
restart.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
Run_basics.rst
make code-block formatting more consistent and align with documented conventions
2022-12-30 06:46:09 -05:00
Run_head.rst
…
Run_options.rst
getting out of the insurance business :-)
2023-01-23 16:45:41 -05:00
Run_output.rst
getting out of the insurance business :-)
2023-01-23 16:45:41 -05:00
run_style.rst
improve documentation of the use of verlet/split run style. reformat.
2023-03-02 07:31:33 -05:00
Run_windows.rst
more revisions based on suggestions from languagetool.org
2023-01-22 16:53:39 -05:00
run.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
set.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
shell.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
special_bonds.rst
explain how to keep pairs in the neighbor list even if the scaling factor should be 0.0
2023-05-09 08:24:02 -04:00
Speed_bench.rst
…
Speed_compare.rst
bulk rename of remaining USER- packages
2021-06-29 20:12:59 -04:00
Speed_gpu.rst
revise based on suggestions from languagetool.org
2023-01-22 09:50:27 -05:00
Speed_intel.rst
convert URLs to https where possible, check URLs for bit rot and update or remove
2022-09-24 08:02:18 -04:00
Speed_kokkos.rst
Small tweak to docs
2023-04-27 15:21:30 -06:00
Speed_measure.rst
correct docs about how to get synchronized timings
2022-06-22 10:24:56 -04:00
Speed_omp.rst
some more languagtool.org suggested updates
2023-01-23 05:15:34 -05:00
Speed_opt.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
Speed_packages.rst
make capitalization consistent
2022-09-30 19:53:11 -04:00
Speed_tips.rst
…
Speed.rst
revise based on suggestions from languagetool.org
2023-01-22 09:50:27 -05:00
suffix.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
tad.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
temper_grem.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
temper_npt.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
temper.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
thermo_modify.rst
getting out of the insurance business :-)
2023-01-23 16:45:41 -05:00
thermo_style.rst
getting out of the insurance business :-)
2023-01-23 16:45:41 -05:00
thermo.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
third_order.rst
small doc style update
2023-07-15 12:36:41 -04:00
timer.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
timestep.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
Tools.rst
small doc update
2023-05-01 20:23:13 -04:00
uncompute.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
undump.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
unfix.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
units.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
variable.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
velocity.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
write_coeff.rst
…
write_data.rst
de-doc multiple label maps
2022-08-09 12:01:47 -04:00
write_dump.rst
…
write_restart.rst
…