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1fbd45a05db0afaf73bd3baa075cbd1adf3640e1
lammps/doc/src
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rohskopf 1fbd45a05d Format docs
2022-11-07 17:33:00 -07:00
..
_ext
make more compact
2020-09-06 06:10:39 -04:00
99
…
2001
…
img
add examples import one image to manual
2022-05-08 21:15:32 -04:00
JPG
replace image with embedded latex text
2022-05-04 17:50:25 -04:00
PDF
Update PDF Colvars manual
2022-06-02 11:48:19 -04:00
.gitignore
…
accel_styles.rst
Math replacements and cosmetic edits to documentation
2022-09-01 01:01:46 -05:00
angle_amoeba.rst
fix documentation issues (spelling, references, non-ASCII chars)
2022-07-04 19:09:56 -04:00
angle_charmm.rst
avoid duplication of Accelerator package info in additional doc pages
2021-10-11 16:49:59 -06:00
angle_class2.rst
sync with current develop
2022-04-18 17:29:23 -06:00
angle_coeff.rst
more formatting/typesetting consistency
2022-09-03 04:17:22 -04:00
angle_cosine_buck6d.rst
bulk rename of remaining USER- packages
2021-06-29 20:12:59 -04:00
angle_cosine_delta.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
angle_cosine_periodic.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
angle_cosine_shift_exp.rst
correct package designations for styles in the EXTRA-MOLECULES package
2021-08-22 11:27:48 -04:00
angle_cosine_shift.rst
correct package designations for styles in the EXTRA-MOLECULES package
2021-08-22 11:27:48 -04:00
angle_cosine_squared.rst
correct attribution of angle style cosine/squared with DREIDING
2021-03-22 11:28:22 -04:00
angle_cosine.rst
Update headers in angle_*.rst files
2020-09-02 12:43:48 -04:00
angle_cross.rst
fix up mistyped package names
2021-07-03 16:19:15 -04:00
angle_dipole.rst
move some styles around
2021-07-09 16:54:00 -04:00
angle_fourier_simple.rst
correct package designations for styles in the EXTRA-MOLECULES package
2021-08-22 11:27:48 -04:00
angle_fourier.rst
correct package designations for styles in the EXTRA-MOLECULES package
2021-08-22 11:27:48 -04:00
angle_gaussian.rst
correct package designations for styles in the EXTRA-MOLECULES package
2021-08-22 11:27:48 -04:00
angle_harmonic.rst
Update headers in angle_*.rst files
2020-09-02 12:43:48 -04:00
angle_hybrid.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
angle_mesocnt.rst
update versions strings for the next patch release
2022-09-14 16:29:10 -04:00
angle_mm3.rst
fix up mistyped package names
2021-07-03 16:19:15 -04:00
angle_none.rst
convert remaining style doc sections to be a logical header
2020-08-21 23:33:41 -04:00
angle_quartic.rst
correct package designations for styles in the EXTRA-MOLECULES package
2021-08-22 11:27:48 -04:00
angle_spica.rst
changed rstfile names, style names, and description about FF for SPICA
2022-07-08 16:54:01 +09:00
angle_style.rst
Merge branch 'lammps:develop' into mesocnt_stable
2022-08-29 12:45:20 +01:00
angle_table.rst
update to upstream
2021-05-21 16:15:31 -04:00
angle_zero.rst
Tweaks to documentation to make it more consistent and machine-readable
2022-08-19 19:25:15 -05:00
angles.rst
…
atc_add_molecule.rst
…
atc_add_species.rst
…
atc_atom_element_map.rst
…
atc_atom_weight.rst
…
atc_atomic_charge.rst
…
atc_boundary_dynamics.rst
…
atc_boundary_faceset.rst
…
atc_boundary_type.rst
…
atc_consistent_fe_initialization.rst
…
atc_control_localized_lambda.rst
…
atc_control_momentum.rst
big update
2020-08-24 16:54:16 +02:00
atc_control_thermal.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
atc_decomposition.rst
…
atc_electron_integration.rst
…
atc_equilibrium_start.rst
…
atc_extrinsic_exchange.rst
…
atc_fe_md_boundary.rst
…
atc_filter_scale.rst
…
atc_filter_type.rst
…
atc_fix_flux.rst
…
atc_fix.rst
…
atc_hardy_computes.rst
…
atc_hardy_fields.rst
big update
2020-08-24 16:54:16 +02:00
atc_hardy_gradients.rst
big update
2020-08-24 16:54:16 +02:00
atc_hardy_kernel.rst
big update
2020-08-24 16:54:16 +02:00
atc_hardy_on_the_fly.rst
…
atc_hardy_rates.rst
big update
2020-08-24 16:54:16 +02:00
atc_initial.rst
…
atc_internal_element_set.rst
…
atc_internal_quadrature.rst
…
atc_kernel_bandwidth.rst
…
atc_lumped_lambda_solve.rst
…
atc_mask_direction.rst
…
atc_mass_matrix.rst
…
atc_material.rst
…
atc_mesh_add_to_nodeset.rst
…
atc_mesh_create_elementset.rst
…
atc_mesh_create_faceset_box.rst
…
atc_mesh_create_faceset_plane.rst
…
atc_mesh_create_nodeset.rst
…
atc_mesh_create.rst
…
atc_mesh_delete_elements.rst
…
atc_mesh_nodeset_to_elementset.rst
…
atc_mesh_output.rst
…
atc_mesh_quadrature.rst
…
atc_mesh_read.rst
…
atc_mesh_write.rst
…
atc_output_boundary_integral.rst
…
atc_output_contour_integral.rst
…
atc_output_nodeset.rst
…
atc_output_volume_integral.rst
…
atc_output.rst
Consistently use instead of
2020-11-10 14:04:49 +01:00
atc_pair_interactions.rst
…
atc_poisson_solver.rst
…
atc_read_restart.rst
…
atc_remove_molecule.rst
…
atc_remove_source.rst
…
atc_remove_species.rst
big update
2020-08-24 16:54:16 +02:00
atc_reset_atomic_reference.rst
…
atc_reset_time.rst
…
atc_sample_frequency.rst
…
atc_set_reference_pe.rst
big update
2020-08-24 16:54:16 +02:00
atc_source_integration.rst
…
atc_source.rst
…
atc_temperature_definition.rst
…
atc_time_filter.rst
…
atc_time_integration.rst
big update
2020-08-24 16:54:16 +02:00
atc_track_displacement.rst
…
atc_unfix_flux.rst
…
atc_unfix.rst
…
atc_write_atom_weights.rst
…
atc_write_restart.rst
…
atom_modify.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
atom_style.rst
Resolve conflicts with devel branch
2022-08-05 23:30:41 -05:00
balance.rst
Updates to fix code-block at top, math, and anything else I found
2022-08-15 20:17:36 -05:00
Bibliography.rst
reorder punctuation and quotation characters for clarity
2022-09-12 19:02:46 -04:00
bond_bpm_rotational.rst
rename fix STORE_LOCAL to STORE/LOCAL for consistency
2022-08-05 02:57:38 -04:00
bond_bpm_spring.rst
Fixing remaining errors/warnings in doc build
2022-04-12 15:59:38 -06:00
bond_class2.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
bond_coeff.rst
more formatting/typesetting consistency
2022-09-03 04:17:22 -04:00
bond_fene_expand.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
bond_fene.rst
clarify docs for bond style fene/nm/split and rename to fene/nm
2021-12-06 16:21:12 -05:00
bond_gaussian.rst
correct package designations for styles in the EXTRA-MOLECULES package
2021-08-22 11:27:48 -04:00
bond_gromos.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
bond_harmonic_shift_cut.rst
correct package designations for styles in the EXTRA-MOLECULES package
2021-08-22 11:27:48 -04:00
bond_harmonic_shift.rst
correct package designations for styles in the EXTRA-MOLECULES package
2021-08-22 11:27:48 -04:00
bond_harmonic.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
bond_hybrid.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
bond_mesocnt.rst
update versions strings for the next patch release
2022-09-14 16:29:10 -04:00
bond_mm3.rst
fix up mistyped package names
2021-07-03 16:19:15 -04:00
bond_morse.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
bond_none.rst
big update
2020-08-24 16:54:16 +02:00
bond_nonlinear.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
bond_oxdna.rst
Merge pull request #2924 from ohenrich/cg-dna
2021-09-07 14:12:07 -04:00
bond_quartic.rst
Expanding broken bonds documentation, adding support for more create/delete bond commands, misc small edits
2021-12-06 17:27:25 -07:00
bond_special.rst
move some styles around
2021-07-09 16:54:00 -04:00
bond_style.rst
spelling
2022-08-30 14:44:01 -04:00
bond_table.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
bond_write.rst
big update
2020-08-24 16:54:16 +02:00
bond_zero.rst
Tweaks to documentation to make it more consistent and machine-readable
2022-08-19 19:25:15 -05:00
bonds.rst
…
boundary.rst
Updates to fix code-block at top, math, and anything else I found
2022-08-15 20:17:36 -05:00
box.rst
Updates to fix code-block at top, math, and anything else I found
2022-08-15 20:17:36 -05:00
Build_basics.rst
bulk rename of remaining USER- packages
2021-06-29 20:12:59 -04:00
Build_cmake.rst
Document multi-configuration build support in CMake
2021-11-04 16:32:21 -04:00
Build_development.rst
add documentation for new error and warning policy
2022-04-23 16:40:28 -04:00
Build_diskspace.rst
update documentation to refer to the new branch names (develop, release)
2021-10-10 04:39:16 -04:00
Build_extras.rst
whitespace
2022-07-29 06:58:48 -04:00
Build_link.rst
update/correct documentation for changes to the STUBS library and its implications
2021-02-17 15:19:24 -05:00
Build_make.rst
bulk rename of remaining USER- packages
2021-06-29 20:12:59 -04:00
Build_manual.rst
correct dangling and inconsistent links to sphinx homepage and rst docs
2022-07-21 08:19:39 -04:00
Build_package.rst
more information about compiling LAMMPS on windows
2022-05-19 00:06:00 -04:00
Build_settings.rst
remove feature for automatic jpeg/png/zlib library download and build
2022-05-28 15:20:22 -04:00
Build_windows.rst
more information about compiling LAMMPS on windows
2022-05-19 00:06:00 -04:00
Build.rst
notes on reducing disk space requirements when building LAMMPS from source
2021-08-25 22:51:21 -04:00
change_box.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
Classes_atom.rst
mass renaming of programmer guide files
2020-09-25 13:59:29 -04:00
Classes_input.rst
mass renaming of programmer guide files
2020-09-25 13:59:29 -04:00
Classes_lammps.rst
mass renaming of programmer guide files
2020-09-25 13:59:29 -04:00
Classes.rst
update header texts
2020-10-14 23:28:28 -04:00
clear.rst
Updates to fix code-block at top, math, and anything else I found
2022-08-15 20:17:36 -05:00
comm_modify.rst
Tweaks to documentation to make it more consistent and machine-readable
2022-08-19 19:25:15 -05:00
comm_style.rst
big update
2020-08-24 16:54:16 +02:00
Commands_all.rst
Merge branch 'develop' into fix-pair-dump-skip
2022-09-12 18:19:12 -04:00
Commands_bond.rst
added bond_style mesocnt documentation, corrected pair_style mesocnt documentation and added mesocnt styles in style indices
2022-08-15 18:44:31 +02:00
Commands_category.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
Commands_compute.rst
Merge and include in compute list
2022-09-17 06:25:47 -06:00
Commands_dump.rst
properly integrate the new file into the document toctree
2022-07-15 17:51:36 -04:00
Commands_fix.rst
new fix pair and dump_modify skip commands
2022-07-28 12:45:20 -06:00
Commands_input.rst
add -skiprun command line flag that sets a timeout so that run and minimizations loops are skipped
2021-09-03 11:21:42 -04:00
Commands_kspace.rst
add a table with list of dump styles
2022-07-15 14:47:45 -06:00
commands_list.rst
Merge branch 'develop' into type-labels
2022-08-08 17:16:50 -04:00
Commands_pair.rst
Complete docs
2022-09-17 06:53:03 -06:00
Commands_parse.rst
clarification on what constituets single, double, and triple quotes.
2022-08-03 01:50:11 -04:00
Commands_removed.rst
rename USER-REAXC to REAXFF
2021-06-29 19:37:55 -04:00
Commands_structure.rst
…
Commands.rst
properly integrate the new file into the document toctree
2022-07-15 17:51:36 -04:00
compute_ackland_atom.rst
Updates to fix code-block at top, math, and anything else I found
2022-08-15 20:17:36 -05:00
compute_adf.rst
Updates to fix code-block at top, math, and anything else I found
2022-08-15 20:17:36 -05:00
compute_angle_local.rst
Updates to fix code-block at top, math, and anything else I found
2022-08-15 20:17:36 -05:00
compute_angle.rst
Updates to fix code-block at top, math, and anything else I found
2022-08-15 20:17:36 -05:00
compute_angmom_chunk.rst
reorder punctuation and quotation characters for clarity
2022-09-12 19:02:46 -04:00
compute_ave_sphere_atom.rst
Updates to fix code-block at top, math, and anything else I found
2022-08-15 20:17:36 -05:00
compute_basal_atom.rst
Updates to fix code-block at top, math, and anything else I found
2022-08-15 20:17:36 -05:00
compute_body_local.rst
Updates to fix code-block at top, math, and anything else I found
2022-08-15 20:17:36 -05:00
compute_bond_local.rst
Math replacements; code-block LAMMPS; clarity and parsing-friendly edits
2022-08-16 20:29:12 -05:00
compute_bond.rst
Updates to fix code-block at top, math, and anything else I found
2022-08-15 20:17:36 -05:00
compute_born_matrix.rst
reorder punctuation and quotation characters for clarity
2022-09-12 19:02:46 -04:00
compute_centro_atom.rst
Updates to fix code-block at top, math, and anything else I found
2022-08-15 20:17:36 -05:00
compute_chunk_atom.rst
Finished edits on computes (whew!); builds with no errors or warnings
2022-08-19 00:25:06 -05:00
compute_chunk_spread_atom.rst
Updates to fix code-block at top, math, and anything else I found
2022-08-15 20:17:36 -05:00
compute_cluster_atom.rst
More math and code-block edits
2022-08-15 23:48:30 -05:00
compute_cna_atom.rst
Updates to fix code-block at top, math, and anything else I found
2022-08-15 20:17:36 -05:00
compute_cnp_atom.rst
Updates to fix code-block at top, math, and anything else I found
2022-08-15 20:17:36 -05:00
compute_com_chunk.rst
reorder punctuation and quotation characters for clarity
2022-09-12 19:02:46 -04:00
compute_com.rst
reorder punctuation and quotation characters for clarity
2022-09-12 19:02:46 -04:00
compute_contact_atom.rst
More math and code-block edits
2022-08-15 23:48:30 -05:00
compute_coord_atom.rst
Tweaks to documentation to make it more consistent and machine-readable
2022-08-19 19:25:15 -05:00
compute_damage_atom.rst
More math and code-block edits
2022-08-15 23:48:30 -05:00
compute_dihedral_local.rst
More math and code-block edits
2022-08-15 23:48:30 -05:00
compute_dihedral.rst
More math and code-block edits
2022-08-15 23:48:30 -05:00
compute_dilatation_atom.rst
More math and code-block edits
2022-08-15 23:48:30 -05:00
compute_dipole_chunk.rst
reorder punctuation and quotation characters for clarity
2022-09-12 19:02:46 -04:00
compute_dipole.rst
reorder punctuation and quotation characters for clarity
2022-09-12 19:02:46 -04:00
compute_displace_atom.rst
Finished edits on computes (whew!); builds with no errors or warnings
2022-08-19 00:25:06 -05:00
compute_dpd_atom.rst
More math and code-block edits
2022-08-15 23:48:30 -05:00
compute_dpd.rst
More math and code-block edits
2022-08-15 23:48:30 -05:00
compute_edpd_temp_atom.rst
More math and code-block edits
2022-08-15 23:48:30 -05:00
compute_efield_atom.rst
More math and code-block edits
2022-08-15 23:48:30 -05:00
compute_entropy_atom.rst
Fixed typos; evidently make html is more forgiving than make pdf
2022-08-22 22:03:18 -05:00
compute_erotate_asphere.rst
reorder punctuation and quotation characters for clarity
2022-09-12 19:02:46 -04:00
compute_erotate_rigid.rst
reorder punctuation and quotation characters for clarity
2022-09-12 19:02:46 -04:00
compute_erotate_sphere_atom.rst
More math and code-block edits
2022-08-15 23:48:30 -05:00
compute_erotate_sphere.rst
reorder punctuation and quotation characters for clarity
2022-09-12 19:02:46 -04:00
compute_event_displace.rst
reorder punctuation and quotation characters for clarity
2022-09-12 19:02:46 -04:00
compute_fabric.rst
Tweaks to documentation to make it more consistent and machine-readable
2022-08-19 19:25:15 -05:00
compute_fep_ta.rst
Fixed kT vs k_B T in a couple of places and associated description
2022-08-22 23:46:49 -05:00
compute_fep.rst
reorder punctuation and quotation characters for clarity
2022-09-12 19:02:46 -04:00
compute_global_atom.rst
Math replacements; code-block LAMMPS; clarity and parsing-friendly edits
2022-08-16 20:29:12 -05:00
compute_group_group.rst
reorder punctuation and quotation characters for clarity
2022-09-12 19:02:46 -04:00
compute_gyration_chunk.rst
Math replacements; code-block LAMMPS; clarity and parsing-friendly edits
2022-08-16 20:29:12 -05:00
compute_gyration_shape_chunk.rst
reorder punctuation and quotation characters for clarity
2022-09-12 19:02:46 -04:00
compute_gyration_shape.rst
reorder punctuation and quotation characters for clarity
2022-09-12 19:02:46 -04:00
compute_gyration.rst
reorder punctuation and quotation characters for clarity
2022-09-12 19:02:46 -04:00
compute_heat_flux.rst
reorder punctuation and quotation characters for clarity
2022-09-12 19:02:46 -04:00
compute_hexorder_atom.rst
Math replacements; code-block LAMMPS; clarity and parsing-friendly edits
2022-08-16 20:29:12 -05:00
compute_hma.rst
reorder punctuation and quotation characters for clarity
2022-09-12 19:02:46 -04:00
compute_improper_local.rst
Math replacements; code-block LAMMPS; clarity and parsing-friendly edits
2022-08-16 20:29:12 -05:00
compute_improper.rst
Math replacements; code-block LAMMPS; clarity and parsing-friendly edits
2022-08-16 20:29:12 -05:00
compute_inertia_chunk.rst
reorder punctuation and quotation characters for clarity
2022-09-12 19:02:46 -04:00
compute_ke_atom_eff.rst
Math replacements; code-block LAMMPS; clarity and parsing-friendly edits
2022-08-16 20:29:12 -05:00
compute_ke_atom.rst
Math replacements; code-block LAMMPS; clarity and parsing-friendly edits
2022-08-16 20:29:12 -05:00
compute_ke_eff.rst
Math replacements; code-block LAMMPS; clarity and parsing-friendly edits
2022-08-16 20:29:12 -05:00
compute_ke_rigid.rst
reorder punctuation and quotation characters for clarity
2022-09-12 19:02:46 -04:00
compute_ke.rst
reorder punctuation and quotation characters for clarity
2022-09-12 19:02:46 -04:00
compute_mesont.rst
Math replacements; code-block LAMMPS; clarity and parsing-friendly edits
2022-08-16 20:29:12 -05:00
compute_mliap.rst
Math replacements; code-block LAMMPS; clarity and parsing-friendly edits
2022-08-16 20:29:12 -05:00
compute_modify.rst
Changed a couple of "dof" to "DOF" as per Axel's preference
2022-08-22 23:29:24 -05:00
compute_momentum.rst
reorder punctuation and quotation characters for clarity
2022-09-12 19:02:46 -04:00
compute_msd_chunk.rst
reorder punctuation and quotation characters for clarity
2022-09-12 19:02:46 -04:00
compute_msd_nongauss.rst
reorder punctuation and quotation characters for clarity
2022-09-12 19:02:46 -04:00
compute_msd.rst
reorder punctuation and quotation characters for clarity
2022-09-12 19:02:46 -04:00
compute_nbond_atom.rst
Math replacements; code-block LAMMPS; clarity and parsing-friendly edits
2022-08-16 20:29:12 -05:00
compute_omega_chunk.rst
reorder punctuation and quotation characters for clarity
2022-09-12 19:02:46 -04:00
compute_orientorder_atom.rst
After running "make fix-whitespace"
2022-08-22 21:41:12 -05:00
compute_pair_local.rst
Tweaks to documentation to make it more consistent and machine-readable
2022-08-19 19:25:15 -05:00
compute_pair.rst
merged in develop
2022-09-07 14:12:26 -06:00
compute_pe_atom.rst
Math replacements; code-block LAMMPS; clarity and parsing-friendly edits
2022-08-16 20:29:12 -05:00
compute_pe.rst
reorder punctuation and quotation characters for clarity
2022-09-12 19:02:46 -04:00
compute_plasticity_atom.rst
reorder punctuation and quotation characters for clarity
2022-09-12 19:02:46 -04:00
compute_podfit.rst
Format docs
2022-11-07 17:33:00 -07:00
compute_pressure_uef.rst
Math replacements; code-block LAMMPS; clarity and parsing-friendly edits
2022-08-16 20:29:12 -05:00
compute_pressure.rst
reorder punctuation and quotation characters for clarity
2022-09-12 19:02:46 -04:00
compute_property_atom.rst
update versions strings for the next patch release
2022-09-14 16:29:10 -04:00
compute_property_chunk.rst
reorder punctuation and quotation characters for clarity
2022-09-12 19:02:46 -04:00
compute_property_local.rst
reorder punctuation and quotation characters for clarity
2022-09-12 19:02:46 -04:00
compute_ptm_atom.rst
Math replacements; code-block LAMMPS; clarity and parsing-friendly edits
2022-08-16 20:29:12 -05:00
compute_rdf.rst
reorder punctuation and quotation characters for clarity
2022-09-12 19:02:46 -04:00
compute_reduce_chunk.rst
reorder punctuation and quotation characters for clarity
2022-09-12 19:02:46 -04:00
compute_reduce.rst
reorder punctuation and quotation characters for clarity
2022-09-12 19:02:46 -04:00
compute_rigid_local.rst
Fixed typos; evidently make html is more forgiving than make pdf
2022-08-22 22:03:18 -05:00
compute_saed.rst
Fixed typos; evidently make html is more forgiving than make pdf
2022-08-22 22:03:18 -05:00
compute_slice.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
compute_smd_contact_radius.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
compute_smd_damage.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
compute_smd_hourglass_error.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
compute_smd_internal_energy.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
compute_smd_plastic_strain_rate.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
compute_smd_plastic_strain.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
compute_smd_rho.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
compute_smd_tlsph_defgrad.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
compute_smd_tlsph_dt.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
compute_smd_tlsph_num_neighs.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
compute_smd_tlsph_shape.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
compute_smd_tlsph_strain_rate.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
compute_smd_tlsph_strain.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
compute_smd_tlsph_stress.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
compute_smd_triangle_vertices.rst
Updates documentation files to make them more consistent and some typo fixes (round 1)
2022-08-05 23:03:09 -05:00
compute_smd_ulsph_effm.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
compute_smd_ulsph_num_neighs.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
compute_smd_ulsph_strain_rate.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
compute_smd_ulsph_strain.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
compute_smd_ulsph_stress.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
compute_smd_vol.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
compute_sna_atom.rst
fix typo
2022-07-09 16:07:55 -04:00
compute_sph_e_atom.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
compute_sph_rho_atom.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
compute_sph_t_atom.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
compute_spin.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
compute_stress_atom.rst
add example for a 1-d pressure profile
2022-08-29 17:04:48 -04:00
compute_stress_mop.rst
More cosmetic edits to documentation
2022-08-18 19:25:06 -05:00
compute_stress_profile.rst
reorder punctuation and quotation characters for clarity
2022-09-12 19:02:46 -04:00
compute_tally.rst
reorder punctuation and quotation characters for clarity
2022-09-12 19:02:46 -04:00
compute_tdpd_cc_atom.rst
More cosmetic edits to documentation
2022-08-18 19:25:06 -05:00
compute_temp_asphere.rst
reorder punctuation and quotation characters for clarity
2022-09-12 19:02:46 -04:00
compute_temp_body.rst
reorder punctuation and quotation characters for clarity
2022-09-12 19:02:46 -04:00
compute_temp_chunk.rst
reorder punctuation and quotation characters for clarity
2022-09-12 19:02:46 -04:00
compute_temp_com.rst
reorder punctuation and quotation characters for clarity
2022-09-12 19:02:46 -04:00
compute_temp_cs.rst
reorder punctuation and quotation characters for clarity
2022-09-12 19:02:46 -04:00
compute_temp_deform_eff.rst
reorder punctuation and quotation characters for clarity
2022-09-12 19:02:46 -04:00
compute_temp_deform.rst
reorder punctuation and quotation characters for clarity
2022-09-12 19:02:46 -04:00
compute_temp_drude.rst
reorder punctuation and quotation characters for clarity
2022-09-12 19:02:46 -04:00
compute_temp_eff.rst
reorder punctuation and quotation characters for clarity
2022-09-12 19:02:46 -04:00
compute_temp_partial.rst
reorder punctuation and quotation characters for clarity
2022-09-12 19:02:46 -04:00
compute_temp_profile.rst
reorder punctuation and quotation characters for clarity
2022-09-12 19:02:46 -04:00
compute_temp_ramp.rst
reorder punctuation and quotation characters for clarity
2022-09-12 19:02:46 -04:00
compute_temp_region_eff.rst
reorder punctuation and quotation characters for clarity
2022-09-12 19:02:46 -04:00
compute_temp_region.rst
reorder punctuation and quotation characters for clarity
2022-09-12 19:02:46 -04:00
compute_temp_rotate.rst
reorder punctuation and quotation characters for clarity
2022-09-12 19:02:46 -04:00
compute_temp_sphere.rst
reorder punctuation and quotation characters for clarity
2022-09-12 19:02:46 -04:00
compute_temp_uef.rst
Finished edits on computes (whew!); builds with no errors or warnings
2022-08-19 00:25:06 -05:00
compute_temp.rst
reorder punctuation and quotation characters for clarity
2022-09-12 19:02:46 -04:00
compute_ti.rst
reorder punctuation and quotation characters for clarity
2022-09-12 19:02:46 -04:00
compute_torque_chunk.rst
reorder punctuation and quotation characters for clarity
2022-09-12 19:02:46 -04:00
compute_vacf.rst
reorder punctuation and quotation characters for clarity
2022-09-12 19:02:46 -04:00
compute_vcm_chunk.rst
reorder punctuation and quotation characters for clarity
2022-09-12 19:02:46 -04:00
compute_viscosity_cos.rst
reorder punctuation and quotation characters for clarity
2022-09-12 19:02:46 -04:00
compute_voronoi_atom.rst
reorder punctuation and quotation characters for clarity
2022-09-12 19:02:46 -04:00
compute_xrd.rst
reorder punctuation and quotation characters for clarity
2022-09-12 19:02:46 -04:00
compute.rst
Merge and include in compute list
2022-09-17 06:25:47 -06:00
computes.rst
…
Cplusplus.rst
mass renaming of programmer guide files
2020-09-25 13:59:29 -04:00
create_atoms.rst
reorder punctuation and quotation characters for clarity
2022-09-12 19:02:46 -04:00
create_bonds.rst
Edits to documentation files for consistency and math
2022-08-19 23:49:44 -05:00
create_box.rst
Edits to documentation files for consistency and math
2022-08-19 23:49:44 -05:00
delete_atoms.rst
fix typo
2022-08-28 11:21:38 -04:00
delete_bonds.rst
Edits to documentation files for consistency and math
2022-08-19 23:49:44 -05:00
Developer_code_design.rst
correct file name
2022-02-18 21:24:02 -05:00
Developer_comm_ops.rst
update docs
2022-02-25 14:13:03 -05:00
Developer_flow.rst
Use User's Guide and Programmer's Guide. Normalize header level formatting
2020-10-12 23:31:03 -04:00
Developer_notes.rst
implement suggestions from @athomps
2022-03-18 18:28:20 -04:00
Developer_org.rst
remove obsolete TODO item
2022-03-03 06:43:52 -05:00
Developer_par_comm.rst
break large file into multiple smaller files by section and add toctree
2021-09-05 21:57:03 -04:00
Developer_par_long.rst
use larger version of FFT grid comm image
2021-09-06 15:50:02 -04:00
Developer_par_neigh.rst
fix typo
2021-09-05 22:10:00 -04:00
Developer_par_openmp.rst
add discussion of OpenMP parallelization
2021-09-06 09:52:19 -04:00
Developer_par_part.rst
break large file into multiple smaller files by section and add toctree
2021-09-05 21:57:03 -04:00
Developer_parallel.rst
update some formulations as suggested by @sjplimp
2021-09-23 13:51:06 -04:00
Developer_platform.rst
implement and use a platform neutral abstraction of unsetenv(3)
2021-11-03 10:53:45 -04:00
Developer_plugins.rst
provide README files with pointers to the developer info for plugins
2022-06-04 11:49:33 -04:00
Developer_unittest.rst
bulk rename of remaining USER- packages
2021-06-29 20:12:59 -04:00
Developer_updating.rst
update versions strings for the next patch release
2022-09-14 16:29:10 -04:00
Developer_utils.rst
new utility function "utils::expand_type" to convert type labels to numeric strings
2022-09-05 05:45:31 -04:00
Developer_write.rst
correct code example
2022-01-01 16:40:54 -05:00
Developer.rst
Initial version of an LAMMPS older version code update guide
2022-07-22 00:03:34 -04:00
dielectric.rst
Edits to documentation files for consistency and math
2022-08-19 23:49:44 -05:00
dihedral_charmm.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
dihedral_class2.rst
Update headers in dihedral_*.rst files
2020-09-02 12:57:44 -04:00
dihedral_coeff.rst
more formatting/typesetting consistency
2022-09-03 04:17:22 -04:00
dihedral_cosine_shift_exp.rst
move some styles around
2021-07-09 16:54:00 -04:00
dihedral_fourier.rst
correct package designations for styles in the EXTRA-MOLECULES package
2021-08-22 11:27:48 -04:00
dihedral_harmonic.rst
Update headers in dihedral_*.rst files
2020-09-02 12:57:44 -04:00
dihedral_helix.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
dihedral_hybrid.rst
update docs for hybrid style updates
2021-08-02 21:53:31 -04:00
dihedral_multi_harmonic.rst
Update headers in dihedral_*.rst files
2020-09-02 12:57:44 -04:00
dihedral_nharmonic.rst
correct package designations for styles in the EXTRA-MOLECULES package
2021-08-22 11:27:48 -04:00
dihedral_none.rst
convert remaining style doc sections to be a logical header
2020-08-21 23:33:41 -04:00
dihedral_opls.rst
Update headers in dihedral_*.rst files
2020-09-02 12:57:44 -04:00
dihedral_quadratic.rst
correct package designations for styles in the EXTRA-MOLECULES package
2021-08-22 11:27:48 -04:00
dihedral_spherical.rst
correct package designations for styles in the EXTRA-MOLECULES package
2021-08-22 11:27:48 -04:00
dihedral_style.rst
Edits to documentation files for consistency and math
2022-08-19 23:49:44 -05:00
dihedral_table.rst
correct package designations for styles in the EXTRA-MOLECULES package
2021-08-22 11:27:48 -04:00
dihedral_zero.rst
Updates documentation files to make them more consistent and some typo fixes (round 1)
2022-08-05 23:03:09 -05:00
dihedrals.rst
…
dimension.rst
Edits to documentation files for consistency and math
2022-08-19 23:49:44 -05:00
displace_atoms.rst
Edits to documentation files for consistency and math
2022-08-19 23:49:44 -05:00
dump_adios.rst
Math replacements and cosmetic edits to documentation
2022-09-01 01:01:46 -05:00
dump_cfg_uef.rst
Math replacements and cosmetic edits to documentation
2022-09-01 01:01:46 -05:00
dump_h5md.rst
Updates documentation files to make them more consistent and some typo fixes (round 1)
2022-08-05 23:03:09 -05:00
dump_image.rst
reorder punctuation and quotation characters for clarity
2022-09-12 19:02:46 -04:00
dump_modify.rst
update version strings
2022-09-14 16:48:33 -04:00
dump_molfile.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
dump_netcdf.rst
add missing index entries for dump style
2022-07-15 21:23:26 -04:00
dump_vtk.rst
Math replacements and cosmetic edits to documentation
2022-09-01 01:01:46 -05:00
dump.rst
reorder punctuation and quotation characters for clarity
2022-09-12 19:02:46 -04:00
dumps.rst
also index dump styles
2022-07-15 22:58:49 -04:00
dynamical_matrix.rst
update docs
2021-12-14 09:13:05 -05:00
echo.rst
Minor edits to doc pages for echo group if
2022-08-21 22:19:30 -05:00
Errors_bugs.rst
remove references to the mailing list in the manual and replace with forum link, if needed
2022-03-29 07:01:00 -04:00
Errors_common.rst
update URLs in source code and manual
2021-05-24 14:18:20 -04:00
Errors_debug.rst
fix typo
2021-09-20 07:29:10 -04:00
Errors_details.rst
add documentation for new error and warning policy
2022-04-23 16:40:28 -04:00
Errors_messages.rst
Update Errors_messages.rst
2022-09-07 00:02:31 -04:00
Errors_warnings.rst
Update Errors_warnings.rst
2022-07-13 11:51:50 -04:00
Errors.rst
add utility to print url with pointer to error message
2022-04-22 05:25:50 -04:00
Examples.rst
Merge branch 'develop' into BPM
2022-04-11 12:18:34 -04:00
fix_accelerate_cos.rst
Math replacements and cosmetic edits to documentation
2022-09-01 01:01:46 -05:00
fix_acks2_reaxff.rst
Math replacements and cosmetic edits to documentation
2022-09-01 01:01:46 -05:00
fix_adapt_fep.rst
reorder punctuation and quotation characters for clarity
2022-09-12 19:02:46 -04:00
fix_adapt.rst
reorder punctuation and quotation characters for clarity
2022-09-12 19:02:46 -04:00
fix_addforce.rst
reorder punctuation and quotation characters for clarity
2022-09-12 19:02:46 -04:00
fix_addtorque.rst
reorder punctuation and quotation characters for clarity
2022-09-12 19:02:46 -04:00
fix_amoeba_bitorsion.rst
reorder punctuation and quotation characters for clarity
2022-09-12 19:02:46 -04:00
fix_amoeba_pitorsion.rst
reorder punctuation and quotation characters for clarity
2022-09-12 19:02:46 -04:00
fix_append_atoms.rst
Math replacements and cosmetic edits to documentation
2022-09-01 01:01:46 -05:00
fix_atc.rst
reorder punctuation and quotation characters for clarity
2022-09-12 19:02:46 -04:00
fix_atom_swap.rst
reorder punctuation and quotation characters for clarity
2022-09-12 19:02:46 -04:00
fix_ave_atom.rst
reorder punctuation and quotation characters for clarity
2022-09-12 19:02:46 -04:00
fix_ave_chunk.rst
reorder punctuation and quotation characters for clarity
2022-09-12 19:02:46 -04:00
fix_ave_correlate_long.rst
Math-related edits and code-block swaps; checkd builds for pdf and html docs
2022-09-02 17:44:45 -05:00
fix_ave_correlate.rst
reorder punctuation and quotation characters for clarity
2022-09-12 19:02:46 -04:00
fix_ave_histo.rst
reorder punctuation and quotation characters for clarity
2022-09-12 19:02:46 -04:00
fix_ave_time.rst
reorder punctuation and quotation characters for clarity
2022-09-12 19:02:46 -04:00
fix_aveforce.rst
Math-related edits and code-block swaps; checkd builds for pdf and html docs
2022-09-02 17:44:45 -05:00
fix_balance.rst
reorder punctuation and quotation characters for clarity
2022-09-12 19:02:46 -04:00
fix_bocs.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_bond_break.rst
Expanding broken bonds documentation, adding support for more create/delete bond commands, misc small edits
2021-12-06 17:27:25 -07:00
fix_bond_create.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_bond_react.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_bond_swap.rst
add note to doc page about sticker site model
2022-09-12 09:41:29 -06:00
fix_box_relax.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_brownian.rst
fix doc building issues
2022-03-29 09:47:44 -04:00
fix_charge_regulation.rst
whitespace
2022-01-28 14:48:34 -05:00
fix_cmap.rst
doc pages for AMOEBA/HIPPO
2022-04-18 16:38:41 -06:00
fix_colvars.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_controller.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_damping_cundall.rst
add Note to damping/cundall documentation about fix order. Remove fix order warning from fix viscous/sphere
2022-03-23 14:59:43 -05:00
fix_deform.rst
doc page edit
2022-04-04 08:59:40 -06:00
fix_deposit.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_dpd_energy.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_dpd_source.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_drag.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_drude_transform.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_drude.rst
update docs for renames examples folders
2021-06-29 11:31:57 -04:00
fix_dt_reset.rst
bug fixes to make a series of test inputs run correctly
2021-12-08 16:44:51 -07:00
fix_efield.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_ehex.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_electrode_conp.rst
fixed rogue linebreak
2022-08-05 23:36:01 -05:00
fix_electron_stopping.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_enforce2d.rst
Apply header fix to all remaining fix styles docs
2020-09-02 11:05:33 -04:00
fix_eos_cv.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_eos_table_rx.rst
refer to temperature more consistently with :math:T instead of *T*
2022-08-23 05:26:07 -04:00
fix_eos_table.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_evaporate.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_external.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_ffl.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_filter_corotate.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_flow_gauss.rst
Updates documentation files to make them more consistent and some typo fixes (round 1)
2022-08-05 23:03:09 -05:00
fix_freeze.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_gcmc.rst
refer to temperature more consistently with :math:T instead of *T*
2022-08-23 05:26:07 -04:00
fix_gld.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_gle.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_gravity.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_grem.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_halt.rst
use MBytes consistently
2021-08-26 01:00:08 -04:00
fix_heat.rst
big update
2020-08-24 16:54:16 +02:00
fix_hyper_global.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_hyper_local.rst
consistently use prefactor instead of pre-factor (the former was more common)
2022-05-17 16:20:10 -04:00
fix_imd.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_indent.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_ipi.rst
Updates documentation files to make them more consistent and some typo fixes (round 1)
2022-08-05 23:03:09 -05:00
fix_langevin_drude.rst
Consolidate "Jiang" citations
2021-12-06 14:07:36 -05:00
fix_langevin_eff.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_langevin_spin.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_langevin.rst
refer to temperature more consistently with :math:T instead of *T*
2022-08-23 05:26:07 -04:00
fix_latte.rst
Merge branch 'fix-gcmc-with-latte' of github.com:lammps/lammps into fix-gcmc-with-latte
2022-09-13 09:17:58 -06:00
fix_lb_fluid.rst
remove defunct LBtype argument from lb/fluid doc
2022-03-27 11:26:23 -04:00
fix_lb_momentum.rst
upgrade of lb/fluid fix
2021-12-01 14:31:57 -05:00
fix_lb_viscous.rst
update citation references
2022-03-04 18:16:02 -05:00
fix_lineforce.rst
convert remaining style doc sections to be a logical header
2020-08-21 23:33:41 -04:00
fix_manifoldforce.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_mdi_qm.rst
fix whitespace and apply clang-format
2022-09-08 23:40:37 -04:00
fix_meso_move.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_modify_atc_commands.rst
…
fix_modify.rst
apply changes suggested by @sjplimp
2022-04-29 17:33:37 -04:00
fix_mol_swap.rst
fix spelling and make consistent
2021-10-13 19:25:09 -04:00
fix_momentum.rst
fix minor documentation issues
2022-05-11 13:23:59 -04:00
fix_move.rst
add "transrot" style to fix move that allows to do translation and rotation at the same time
2022-04-02 18:34:17 -04:00
fix_mscg.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_msst.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_mvv_dpd.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_neb_spin.rst
convert remaining style doc sections to be a logical header
2020-08-21 23:33:41 -04:00
fix_neb.rst
Merge branch 'master' into collected-small-changes
2021-07-27 11:15:00 -04:00
fix_nh_eff.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_nh_uef.rst
Updates documentation files to make them more consistent and some typo fixes (round 1)
2022-08-05 23:03:09 -05:00
fix_nh.rst
use k_B for Boltzmann constant
2022-08-23 00:04:25 -04:00
fix_nph_asphere.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_nph_body.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_nph_sphere.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_nphug.rst
refer to temperature more consistently with :math:T instead of *T*
2022-08-23 05:26:07 -04:00
fix_npt_asphere.rst
clarify doc pages for thermostatting fixes to mention regions
2021-09-30 16:55:22 -06:00
fix_npt_body.rst
clarify doc pages for thermostatting fixes to mention regions
2021-09-30 16:55:22 -06:00
fix_npt_cauchy.rst
clarify doc pages for thermostatting fixes to mention regions
2021-09-30 16:55:22 -06:00
fix_npt_sphere.rst
additional tweaks to clarify fix sphere doc pages
2022-07-28 16:30:00 -06:00
fix_numdiff_virial.rst
Finished debugging, testing, documenting
2022-01-28 18:34:30 -07:00
fix_numdiff.rst
Finished debugging, testing, documenting
2022-01-28 18:34:30 -07:00
fix_nve_asphere_noforce.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_nve_asphere.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_nve_awpmd.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_nve_body.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_nve_bpm_sphere.rst
Fixing remaining errors/warnings in doc build
2022-04-12 15:59:38 -06:00
fix_nve_dot.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_nve_dotc_langevin.rst
refer to temperature more consistently with :math:T instead of *T*
2022-08-23 05:26:07 -04:00
fix_nve_eff.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_nve_limit.rst
convert remaining style doc sections to be a logical header
2020-08-21 23:33:41 -04:00
fix_nve_line.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_nve_manifold_rattle.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_nve_noforce.rst
move back to src for dependencies
2021-07-27 15:53:35 -04:00
fix_nve_sphere.rst
additional tweaks to clarify fix sphere doc pages
2022-07-28 16:30:00 -06:00
fix_nve_spin.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_nve_tri.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_nve.rst
doc fixes: spelling and links
2022-04-23 07:34:44 -04:00
fix_nvk.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_nvt_asphere.rst
clarify doc pages for thermostatting fixes to mention regions
2021-09-30 16:55:22 -06:00
fix_nvt_body.rst
clarify doc pages for thermostatting fixes to mention regions
2021-09-30 16:55:22 -06:00
fix_nvt_manifold_rattle.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_nvt_sllod_eff.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_nvt_sllod.rst
Finished debugging, testing, documenting
2022-01-28 18:34:30 -07:00
fix_nvt_sphere.rst
additional tweaks to clarify fix sphere doc pages
2022-07-28 16:30:00 -06:00
fix_oneway.rst
Updates documentation files to make them more consistent and some typo fixes (round 1)
2022-08-05 23:03:09 -05:00
fix_orient_eco.rst
fix a few typos with :doc: references
2022-09-04 17:27:32 -04:00
fix_orient.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_pafi.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_pair.rst
update version strings
2022-09-14 16:48:33 -04:00
fix_phonon.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_pimd.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_planeforce.rst
convert remaining style doc sections to be a logical header
2020-08-21 23:33:41 -04:00
fix_plumed.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_poems.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_polarize.rst
Improved the precision of the conversion factor epsilon0e2q, added more options for units, ensured that qqrd2e be included in efield in several pair styles, and updated the fix polarize doc page
2022-04-17 12:01:41 -05:00
fix_pour.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_precession_spin.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_press_berendsen.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_print.rst
adding of timer-style variables and associated doc pages
2022-05-06 11:21:36 -06:00
fix_propel_self.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_property_atom.rst
Updates documentation files to make them more consistent and some typo fixes (round 1)
2022-08-05 23:03:09 -05:00
fix_python_invoke.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_python_move.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_qbmsst.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_qeq_comb.rst
update the note based on the suggestion by @athomps
2022-02-18 11:38:05 -05:00
fix_qeq_reaxff.rst
Merge pull request #3147 from stanmoore1/amd_hip_opt
2022-02-22 16:06:28 -05:00
fix_qeq.rst
update the note based on the suggestion by @athomps
2022-02-18 11:38:05 -05:00
fix_qmmm.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_qtb.rst
use MBytes consistently
2021-08-26 01:00:08 -04:00
fix_reaxff_bonds.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_reaxff_species.rst
clarify how reaxff/species decides when to reneighbor
2022-07-06 00:45:36 -04:00
fix_recenter.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_restrain.rst
consistently use prefactor instead of pre-factor (the former was more common)
2022-05-17 16:20:10 -04:00
fix_rhok.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_rigid_meso.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_rigid.rst
Updates documentation files to make them more consistent and some typo fixes (round 1)
2022-08-05 23:03:09 -05:00
fix_rx.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_saed_vtk.rst
fix saed/vtk does not use the overwrite option anywhere
2021-10-04 17:22:58 -04:00
fix_setforce.rst
avoid duplication of Accelerator package info in additional doc pages
2021-10-11 16:49:59 -06:00
fix_shake.rst
update documentation
2022-08-17 15:22:59 -04:00
fix_shardlow.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_smd_adjust_dt.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_smd_integrate_tlsph.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_smd_integrate_ulsph.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_smd_move_triangulated_surface.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_smd_setvel.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_smd_wall_surface.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_smd.rst
Updating MISC to EXTRA-X in doc files
2021-12-13 12:27:00 -07:00
fix_sph_stationary.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_sph.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_spring_chunk.rst
doc page updates for energy contributions of thermostat and non-thermostat fixes
2021-01-26 08:51:47 -07:00
fix_spring_rg.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_spring_self.rst
doc page updates for energy contributions of thermostat and non-thermostat fixes
2021-01-26 08:51:47 -07:00
fix_spring.rst
doc page updates for energy contributions of thermostat and non-thermostat fixes
2021-01-26 08:51:47 -07:00
fix_srd.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_store_force.rst
convert remaining style doc sections to be a logical header
2020-08-21 23:33:41 -04:00
fix_store_state.rst
resolved merge conflicts with master
2021-08-17 11:55:33 -06:00
fix_temp_berendsen.rst
clarify doc pages for thermostatting fixes to mention regions
2021-09-30 16:55:22 -06:00
fix_temp_csvr.rst
clarify doc pages for thermostatting fixes to mention regions
2021-09-30 16:55:22 -06:00
fix_temp_rescale_eff.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_temp_rescale.rst
clarify doc pages for thermostatting fixes to mention regions
2021-09-30 16:55:22 -06:00
fix_tfmc.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_tgnh_drude.rst
clarify doc pages for thermostatting fixes to mention regions
2021-09-30 16:55:22 -06:00
fix_thermal_conductivity.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_ti_spring.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_tmd.rst
modernize parsing in fix tmd, add support for comments and empty lines
2022-03-31 07:36:50 -04:00
fix_ttm.rst
fix typo
2022-04-22 11:27:08 -04:00
fix_tune_kspace.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_vector.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_viscosity.rst
correct statement (PPPM **does** support triclinic for a while already)
2022-01-29 08:18:08 -05:00
fix_viscous_sphere.rst
add support for determining damping scale factor from atom-style variable
2022-03-23 10:43:26 -04:00
fix_viscous.rst
refer to temperature more consistently with :math:T instead of *T*
2022-08-23 05:26:07 -04:00
fix_wall_body_polygon.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_wall_body_polyhedron.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_wall_ees.rst
consistently use prefactor instead of pre-factor (the former was more common)
2022-05-17 16:20:10 -04:00
fix_wall_gran_region.rst
cosmetic changes for consistency
2021-09-07 19:12:59 -04:00
fix_wall_gran.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_wall_piston.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_wall_reflect_stochastic.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_wall_reflect.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_wall_region.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_wall_srd.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_wall.rst
consistently use prefactor instead of pre-factor (the former was more common)
2022-05-17 16:20:10 -04:00
fix_widom.rst
refer to temperature more consistently with :math:T instead of *T*
2022-08-23 05:26:07 -04:00
fix.rst
merged in develop
2022-09-07 14:12:26 -06:00
fixes.rst
…
Fortran.rst
incorporate bugfixes and some suggestions from PR #3314
2022-08-06 17:43:40 -04:00
group2ndx.rst
Updates documentation files to make them more consistent and some typo fixes (round 1)
2022-08-05 23:03:09 -05:00
group.rst
reorder punctuation and quotation characters for clarity
2022-09-12 19:02:46 -04:00
Howto_2d.rst
first chunk of revised updates to the manual addressing link issues.
2020-09-04 11:39:38 -04:00
Howto_amoeba.rst
small rewrite
2022-08-04 13:06:30 -04:00
Howto_barostat.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
Howto_bioFF.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
Howto_body.rst
fix miscalculated example
2022-05-20 01:06:21 -04:00
Howto_bpm.rst
improve formatting
2022-04-15 17:12:31 -04:00
Howto_broken_bonds.rst
permissions
2022-04-12 18:43:47 -04:00
Howto_chunk.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
Howto_cmake.rst
get rid of references to USER-MISC in the general discussion
2021-07-25 10:03:16 -04:00
Howto_coreshell.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
Howto_couple.rst
remove broken links in the manual from removing packages
2022-04-08 17:27:01 -04:00
Howto_diffusion.rst
…
Howto_dispersion.rst
…
Howto_drude2.rst
Consolidate "Jiang" citations
2021-12-06 14:07:36 -05:00
Howto_drude.rst
Update docs for TGNH
2020-11-14 17:08:26 +01:00
Howto_elastic.rst
Added some self-citations for key contributors
2022-02-25 17:03:45 -07:00
Howto_github.rst
clarifications and corrections for the discussion of the main git branches
2021-11-17 06:58:44 -05:00
Howto_granular.rst
whitespace
2021-06-10 23:16:44 -04:00
Howto_kappa.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
Howto_library.rst
rename sections to User Guide and Programmer Guide
2020-10-15 12:00:36 -04:00
Howto_manifold.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
Howto_mdi.rst
fix spelling in MDI docs
2022-06-28 13:58:42 -04:00
Howto_multiple.rst
big update
2020-08-24 16:54:16 +02:00
Howto_nemd.rst
…
Howto_output.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
Howto_polarizable.rst
bulk rename of remaining USER- packages
2021-06-29 20:12:59 -04:00
Howto_pylammps.rst
Change email in docs
2022-02-11 12:51:47 -05:00
Howto_replica.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
Howto_restart.rst
big update
2020-08-24 16:54:16 +02:00
Howto_spc.rst
fix minor documentation issues
2022-05-11 13:23:59 -04:00
Howto_spherical.rst
first chunk of revised updates to the manual addressing link issues.
2020-09-04 11:39:38 -04:00
Howto_spins.rst
Commit before pull
2021-03-30 10:35:25 -06:00
Howto_structured_data.rst
correct python example
2022-06-18 22:25:32 -04:00
Howto_temperature.rst
…
Howto_thermostat.rst
integrate platform sub-namespace into source code and documentation
2021-10-02 16:55:11 -04:00
Howto_tip3p.rst
…
Howto_tip4p.rst
big update
2020-08-24 16:54:16 +02:00
Howto_triclinic.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
Howto_type_labels.rst
update versions strings for the next patch release
2022-09-14 16:29:10 -04:00
Howto_viscosity.rst
formatting corrections and minor tweaks to the Argon viscosity howto
2022-07-01 09:26:23 -04:00
Howto_viz.rst
Merge branch 'master' into collected-small-changes
2021-07-27 11:15:00 -04:00
Howto_walls.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
Howto_wsl.rst
rename "minimal" preset to "basic"
2021-06-30 20:39:17 -04:00
Howto.rst
Merge branch 'develop' into type-labels
2022-08-08 17:16:50 -04:00
hyper.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
if.rst
Minor edits to doc pages for echo group if
2022-08-21 22:19:30 -05:00
improper_amoeba.rst
fix documentation issues (spelling, references, non-ASCII chars)
2022-07-04 19:09:56 -04:00
improper_class2.rst
Update headers in improper_*.rst files
2020-09-02 13:03:03 -04:00
improper_coeff.rst
more formatting/typesetting consistency
2022-09-03 04:17:22 -04:00
improper_cossq.rst
move some styles around
2021-07-09 16:54:00 -04:00
improper_cvff.rst
Update headers in improper_*.rst files
2020-09-02 13:03:03 -04:00
improper_distance.rst
move some styles around
2021-07-09 16:54:00 -04:00
improper_distharm.rst
bulk rename of remaining USER- packages
2021-06-29 20:12:59 -04:00
improper_fourier.rst
move some styles around
2021-07-09 16:54:00 -04:00
improper_harmonic.rst
avoid duplication of Accelerator package info in additional doc pages
2021-10-11 16:49:59 -06:00
improper_hybrid.rst
Updates documentation files to make them more consistent and some typo fixes (round 1)
2022-08-05 23:03:09 -05:00
improper_inversion_harmonic.rst
bulk rename of remaining USER- packages
2021-06-29 20:12:59 -04:00
improper_none.rst
convert remaining style doc sections to be a logical header
2020-08-21 23:33:41 -04:00
improper_ring.rst
move some styles around
2021-07-09 16:54:00 -04:00
improper_sqdistharm.rst
move some styles around
2021-07-09 16:54:00 -04:00
improper_style.rst
doc pages for AMOEBA/HIPPO
2022-04-18 16:38:41 -06:00
improper_umbrella.rst
Update headers in improper_*.rst files
2020-09-02 13:03:03 -04:00
improper_zero.rst
convert remaining style doc sections to be a logical header
2020-08-21 23:33:41 -04:00
impropers.rst
…
include.rst
convert remaining style doc sections to be a logical header
2020-08-21 23:33:41 -04:00
info.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
Install_conda.rst
clarify whom to contact with questions about pre-built binaries. update ubuntu info
2022-07-24 18:12:04 -04:00
Install_git.rst
update github managers.
2022-03-18 11:37:49 -04:00
Install_linux.rst
clarify whom to contact with questions about pre-built binaries. update ubuntu info
2022-07-24 18:12:04 -04:00
Install_mac.rst
remove src/MESSAGE package and supporting dirs and doc pages
2022-04-07 15:44:48 -06:00
Install_tarball.rst
update URL for downloading old LAMMPS versions
2022-03-24 17:02:07 -04:00
Install_windows.rst
cosmetic changes for consistency
2021-09-07 19:12:59 -04:00
Install.rst
clarify whom to contact with questions about pre-built binaries. update ubuntu info
2022-07-24 18:12:04 -04:00
Intro_authors.rst
Change email in docs
2022-02-11 12:51:47 -05:00
Intro_citing.rst
correct typos
2022-07-25 22:32:59 -04:00
Intro_features.rst
whitespace
2021-08-26 01:05:25 -04:00
Intro_nonfeatures.rst
Merge branch 'master' into collected-small-changes
2021-07-27 11:15:00 -04:00
Intro_opensource.rst
update documentation to refer to the new branch names (develop, release)
2021-10-10 04:39:16 -04:00
Intro_overview.rst
update overview text
2021-08-24 23:02:49 -04:00
Intro_website.rst
remove references to the mailing list in the manual and replace with forum link, if needed
2022-03-29 07:01:00 -04:00
Intro.rst
Use User's Guide and Programmer's Guide. Normalize header level formatting
2020-10-12 23:31:03 -04:00
jump.rst
big update
2020-08-24 16:54:16 +02:00
kim_commands.rst
reorder punctuation and quotation characters for clarity
2022-09-12 19:02:46 -04:00
kspace_modify.rst
Review akohlmey
2022-04-05 15:35:04 +00:00
kspace_style.rst
fix typos
2022-06-15 08:14:53 -04:00
label.rst
add reference
2022-07-26 09:19:45 -04:00
labelmap.rst
update versions strings for the next patch release
2022-09-14 16:29:10 -04:00
lattice.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
Library_add.rst
update section headlines
2020-10-08 10:32:02 -04:00
Library_atoms.rst
update titles as suggested by steve and move a few entries around
2020-10-07 20:07:30 -04:00
Library_config.rst
add GPU device query functions to library interface and its wrappers
2021-05-11 14:59:49 -04:00
Library_create.rst
make C library example work with strict C compilers
2021-09-29 10:37:15 -04:00
Library_execute.rst
add comment to explain using the LAMMPS_LIB_MPI define in example
2020-10-09 11:50:53 -04:00
Library_neighbor.rst
update titles as suggested by steve and move a few entries around
2020-10-07 20:07:30 -04:00
Library_objects.rst
update section headlines
2020-10-08 10:32:02 -04:00
Library_properties.rst
update titles as suggested by steve and move a few entries around
2020-10-07 20:07:30 -04:00
Library_scatter.rst
add python interface with optional numpy support for lammps_gather_bonds()
2021-07-26 22:40:21 -04:00
Library_utility.rst
Add lammps_flush_buffers() library function
2022-02-04 10:40:05 -05:00
Library.rst
bulk rename of remaining USER- packages
2021-06-29 20:12:59 -04:00
log.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
Manual_version.rst
clarifications and corrections for the discussion of the main git branches
2021-11-17 06:58:44 -05:00
Manual.rst
adjust location of local ref targets for recent sphinx versions
2022-08-05 22:08:33 -04:00
mass.rst
direct type label support for mass command
2021-12-08 16:04:22 -05:00
mdi.rst
change what is required/optional for mdi plugin command
2022-07-20 09:55:19 -06:00
min_modify.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
min_spin.rst
refactor min_style spin doc page
2022-05-19 09:13:47 -06:00
min_style.rst
fix underline
2022-05-19 23:06:54 -04:00
minimize.rst
discuss why one would want to use check = no during minimization
2022-08-17 16:00:00 -04:00
Modify_atom.rst
update docs for adding atom styles to refactored process
2022-04-14 11:48:18 -04:00
Modify_body.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
Modify_bond.rst
clarify tasks for single() for Bond and Angle classes
2020-10-16 10:48:00 -04:00
Modify_command.rst
update docs for change in class topology
2021-04-13 17:47:21 -04:00
Modify_compute.rst
bulk rename of remaining USER- packages
2021-06-29 20:12:59 -04:00
Modify_contribute.rst
remove references to the mailing list in the manual and replace with forum link, if needed
2022-03-29 07:01:00 -04:00
Modify_dump.rst
…
Modify_fix.rst
document missing call
2022-07-27 22:13:14 -04:00
Modify_kspace.rst
big update
2020-08-24 16:54:16 +02:00
Modify_min.rst
…
Modify_overview.rst
link Modify overview paragraph to Code design page
2022-02-27 11:29:19 -05:00
Modify_pair.rst
explain that the computed force in python pair is force/r same as in Pair:single()
2022-01-03 10:12:51 -05:00
Modify_region.rst
…
Modify_style.rst
correct dangling and inconsistent links to sphinx homepage and rst docs
2022-07-21 08:19:39 -04:00
Modify_thermo.rst
update documentation for modifying LAMMPS to reflect changes to Thermo class
2022-03-19 18:06:56 -04:00
Modify_variable.rst
update documentation for modifying LAMMPS to reflect changes to Thermo class
2022-03-19 18:06:56 -04:00
Modify.rst
small rewording
2022-02-28 12:17:20 -05:00
molecule.rst
document type label support for Shake Bond Types
2022-09-06 23:27:03 -04:00
neb_spin.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
neb.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
neigh_modify.rst
Updates documentation files to make them more consistent and some typo fixes (round 1)
2022-08-05 23:03:09 -05:00
neighbor.rst
cross-reference neighbor multi and point out differences and benefits
2022-07-13 03:11:40 -04:00
newton.rst
big update
2020-08-24 16:54:16 +02:00
next.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
package.rst
Resolve conflicts with devel branch
2022-08-05 23:30:41 -05:00
Packages_details.rst
Format docs
2022-11-07 17:33:00 -07:00
Packages_list.rst
Clean up
2022-09-17 10:00:11 -06:00
Packages.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_adp.rst
Kokkos accelerator variant for adp pair style
2022-05-02 18:17:49 +03:00
pair_agni.rst
avoid duplication of Accelerator package info in additional doc pages
2021-10-11 16:49:59 -06:00
pair_airebo.rst
add a comment explaining the restriction to C and H elements in AIREBO/REBO
2021-08-27 10:02:53 -04:00
pair_amoeba.rst
spelling and improved consistency with other doc pages
2022-09-14 14:34:45 -04:00
pair_atm.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_awpmd.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_beck.rst
forgot to move pair style beck to EXTRA-PAIR
2021-07-28 18:33:33 -04:00
pair_body_nparticle.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_body_rounded_polygon.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_body_rounded_polyhedron.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_bop.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_born.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_bpm_spring.rst
permissions
2022-04-12 18:43:47 -04:00
pair_brownian.rst
Updates documentation files to make them more consistent and some typo fixes (round 1)
2022-08-05 23:03:09 -05:00
pair_buck6d_coul_gauss.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_buck_long.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_buck.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_charmm.rst
consolidate pair-wise vs pairwise spelling
2022-01-21 10:48:35 -05:00
pair_class2.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_coeff.rst
more formatting/typesetting consistency
2022-09-03 04:17:22 -04:00
pair_colloid.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_comb.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_cosine_squared.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_coul_diel.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_coul_shield.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_coul_slater.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_coul_tt.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_coul.rst
add documentation for pair style coul/exclude
2021-08-19 05:25:36 -04:00
pair_cs.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_dielectric.rst
documentation and LAMMPS homepage URL updates
2022-04-14 15:55:22 -04:00
pair_dipole.rst
fix typos with doc references
2022-09-10 04:15:01 -04:00
pair_dpd_ext.rst
use k_B for Boltzmann constant
2022-08-23 00:04:25 -04:00
pair_dpd_fdt.rst
fix multiple typesetting issues and make consistent
2022-09-14 23:26:01 -04:00
pair_dpd.rst
fix multiple typesetting issues and make consistent
2022-09-14 23:26:01 -04:00
pair_drip.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_dsmc.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_e3b.rst
fix some docs formatting issues
2022-06-08 12:47:30 -04:00
pair_eam.rst
spelling and improved consistency with other doc pages
2022-09-14 14:34:45 -04:00
pair_edip.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_eff.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_eim.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_exp6_rx.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_extep.rst
big update
2020-08-24 16:54:16 +02:00
pair_fep_soft.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_gauss.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_gayberne.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_gran.rst
consistently use prefactor instead of pre-factor (the former was more common)
2022-05-17 16:20:10 -04:00
pair_granular.rst
correct unit description of eta_n0 parameters. fixes #3016
2021-11-04 15:24:41 -04:00
pair_gromacs.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_gw.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_harmonic_cut.rst
clarify and correct units of "k"
2022-08-30 05:00:06 -04:00
pair_hbond_dreiding.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_hdnnp.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_hybrid.rst
improve pair hybrid documentation with respect to mixing
2021-11-19 14:18:55 -05:00
pair_ilp_graphene_hbn.rst
integrate better into manual and traditional build system
2022-04-22 11:38:55 -04:00
pair_ilp_tmd.rst
Modified chunk code of pair_ilp_graphene_hbn_opt for adopting pair_saip_metal_opt and pair_ilp_tmd_opt
2022-04-29 21:56:52 +08:00
pair_kim.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_kolmogorov_crespi_full.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_kolmogorov_crespi_z.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_lcbop.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_lebedeva_z.rst
whitespace
2021-11-04 16:48:29 -04:00
pair_line_lj.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_list.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_lj96.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_lj_cubic.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_lj_cut_coul.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_lj_cut_tip4p.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_lj_expand.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_lj_long.rst
update a citation
2022-04-12 12:59:25 -06:00
pair_lj_relres.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_lj_smooth_linear.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_lj_smooth.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_lj_switch3_coulgauss_long.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_lj.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_local_density.rst
correct docs for pair style local/density
2021-12-08 00:22:37 -05:00
pair_lubricate.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_lubricateU.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_mdf.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_meam_spline.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_meam_sw_spline.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_meam.rst
update MEAM to state of latest PR #3412
2022-08-23 14:20:45 -04:00
pair_mesocnt.rst
update versions strings for the next patch release
2022-09-14 16:29:10 -04:00
pair_mesodpd.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_mesont_tpm.rst
bulk rename of remaining USER- packages
2021-06-29 20:12:59 -04:00
pair_mgpt.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_mie.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_mliap.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_modify.rst
cross-reference neighbor multi and point out differences and benefits
2022-07-13 03:11:40 -04:00
pair_momb.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_morse.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_multi_lucy_rx.rst
consistently use prefactor instead of pre-factor (the former was more common)
2022-05-17 16:20:10 -04:00
pair_multi_lucy.rst
consistently use prefactor instead of pre-factor (the former was more common)
2022-05-17 16:20:10 -04:00
pair_nb3b_harmonic.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_nm.rst
make consistent with other reference
2022-01-03 18:26:56 -05:00
pair_none.rst
clarify the description of pair style none
2022-05-20 07:14:05 -04:00
pair_oxdna2.rst
Merge pull request #2924 from ohenrich/cg-dna
2021-09-07 14:12:07 -04:00
pair_oxdna.rst
Merge pull request #2924 from ohenrich/cg-dna
2021-09-07 14:12:07 -04:00
pair_oxrna2.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_pace.rst
Fix copy/paste issue
2022-05-13 10:15:25 -06:00
pair_peri.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_pod.rst
Fix sources
2022-09-17 06:20:34 -06:00
pair_polymorphic.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_python.rst
add harmonic/cut to python example folder. small tweaks to docs and examples
2022-03-18 17:58:30 -04:00
pair_quip.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_rann.rst
Updates documentation files to make them more consistent and some typo fixes (round 1)
2022-08-05 23:03:09 -05:00
pair_reaxff.rst
Update docs
2022-03-04 13:10:25 -07:00
pair_resquared.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_saip_metal.rst
Modified chunk code of pair_ilp_graphene_hbn_opt for adopting pair_saip_metal_opt and pair_ilp_tmd_opt
2022-04-29 21:56:52 +08:00
pair_sdpd_taitwater_isothermal.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_smatb.rst
add some .. versionadded:: statements to indicate the version a feature was added
2022-08-01 03:54:39 -04:00
pair_smd_hertz.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_smd_tlsph.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_smd_triangulated_surface.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_smd_ulsph.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_smtbq.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_snap.rst
Completed inner cutoff, KOKKOS still in progress
2022-04-21 17:30:12 -06:00
pair_soft.rst
consistently use prefactor instead of pre-factor (the former was more common)
2022-05-17 16:20:10 -04:00
pair_sph_heatconduction.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_sph_idealgas.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_sph_lj.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_sph_rhosum.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_sph_taitwater_morris.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_sph_taitwater.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_spica.rst
whitespace
2022-07-15 12:16:15 -04:00
pair_spin_dipole.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_spin_dmi.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_spin_exchange.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_spin_magelec.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_spin_neel.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_srp.rst
cosmetic
2022-07-07 10:35:34 -04:00
pair_style.rst
Complete docs
2022-09-17 06:53:03 -06:00
pair_sw_angle_table.rst
add some .. versionadded:: statements to indicate the version a feature was added
2022-08-01 03:54:39 -04:00
pair_sw.rst
add some .. versionadded:: statements to indicate the version a feature was added
2022-08-01 03:54:39 -04:00
pair_table_rx.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_table.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_tersoff_mod.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_tersoff_zbl.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_tersoff.rst
make documentation of a few pair styles more consistent with the rest
2021-11-29 15:57:11 -05:00
pair_thole.rst
make documentation of a few pair styles more consistent with the rest
2021-11-29 15:57:11 -05:00
pair_threebody_table.rst
add some .. versionadded:: statements to indicate the version a feature was added
2022-08-01 03:54:39 -04:00
pair_tracker.rst
Fixing remaining errors/warnings in doc build
2022-04-12 15:59:38 -06:00
pair_tri_lj.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_ufm.rst
refer to temperature more consistently with :math:T instead of *T*
2022-08-23 05:26:07 -04:00
pair_vashishta.rst
make documentation of a few pair styles more consistent with the rest
2021-11-29 15:57:11 -05:00
pair_wf_cut.rst
offset is not used (by construction of the potential)
2022-08-05 07:20:44 -04:00
pair_write.rst
update comment about pair_write restrictions
2022-01-21 10:47:49 -05:00
pair_yukawa_colloid.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_yukawa.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_zbl.rst
reorder punctuation and quotation characters for clarity
2022-09-12 19:02:46 -04:00
pair_zero.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pairs.rst
…
partition.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
plugin.rst
add kimplugin source and CMake based build support
2022-04-07 12:51:06 -04:00
prd.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
print.rst
adding of timer-style variables and associated doc pages
2022-05-06 11:21:36 -06:00
processors.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
Python_atoms.rst
Fix docs after PR #2592
2021-02-15 13:19:25 -05:00
Python_call.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
Python_config.rst
add documentation for added keyword and library interface functions
2021-01-12 20:11:38 -05:00
Python_create.rst
add lammps_kokos_finalize() support to various LAMMPS wrappers and document
2021-06-27 17:07:42 -04:00
Python_error.rst
make headers more compact
2020-10-16 02:43:20 -04:00
Python_examples.rst
update Pizza.py URLs
2021-07-25 21:04:26 -04:00
Python_execute.rst
Update Python_execute.rst
2020-10-16 18:22:29 -04:00
Python_ext.rst
Update docs
2020-12-17 11:57:40 -05:00
Python_formats.rst
Fix bug in AvgChunkReader and add docs
2021-02-25 16:56:19 -05:00
Python_head.rst
Fix bug in AvgChunkReader and add docs
2021-02-25 16:56:19 -05:00
Python_install.rst
update some more version change timestamps
2022-03-19 20:20:30 -04:00
Python_launch.rst
Add missing code-block language
2020-10-16 18:22:29 -04:00
Python_module.rst
fix errors/typos in manual
2021-04-02 21:00:42 -04:00
Python_neighbor.rst
address spelling and manual processing issues
2021-04-03 11:11:18 -04:00
Python_objects.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
Python_overview.rst
Update docs
2020-12-17 11:57:40 -05:00
Python_properties.rst
Update Python docs
2020-10-15 18:19:57 -04:00
Python_run.rst
Add extra space in Python_run.rst
2020-10-16 17:20:38 -04:00
Python_scatter.rst
Update Python docs
2020-10-15 18:19:57 -04:00
Python_trouble.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
python.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
quit.rst
convert remaining style doc sections to be a logical header
2020-08-21 23:33:41 -04:00
read_data.rst
spelling
2022-09-13 11:43:09 -04:00
read_dump.rst
add option to read_dump that prevents resetting the timestep
2022-07-10 05:00:03 -04:00
read_restart.rst
remove any remap related documentation. add paragraph about file compatibility
2022-06-22 14:22:23 -04:00
region.rst
whitespace fixes
2022-04-27 18:29:27 -04:00
replicate.rst
convert remaining style doc sections to be a logical header
2020-08-21 23:33:41 -04:00
rerun.rst
allow for command-line setting of initial temp
2021-08-26 11:52:07 -06:00
reset_atom_ids.rst
big update
2020-08-24 16:54:16 +02:00
reset_mol_ids.rst
big update
2020-08-24 16:54:16 +02:00
reset_timestep.rst
remove NULL option for reset_timestep
2022-05-04 16:21:06 -04:00
restart.rst
spelling
2022-09-13 11:43:09 -04:00
Run_basics.rst
small tweak
2021-09-27 17:13:32 -04:00
Run_head.rst
…
Run_options.rst
reorder punctuation and quotation characters for clarity
2022-09-12 19:02:46 -04:00
Run_output.rst
consolidate pair-wise vs pairwise spelling
2022-01-21 10:48:35 -05:00
run_style.rst
doc fixes: spelling and links
2022-04-23 07:34:44 -04:00
Run_windows.rst
rename USER-OMP to OPENMP
2021-06-29 17:48:22 -04:00
run.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
set.rst
update versions strings for the next patch release
2022-09-14 16:29:10 -04:00
shell.rst
add support for '-f' option to shell rm built-in command
2022-03-17 15:17:44 -04:00
special_bonds.rst
Merge branch 'develop' into amoeba-ak
2022-05-28 05:24:02 -04:00
Speed_bench.rst
update URLs in source code and manual
2021-05-24 14:18:20 -04:00
Speed_compare.rst
bulk rename of remaining USER- packages
2021-06-29 20:12:59 -04:00
Speed_gpu.rst
cosmetic changes for consistency
2021-09-07 19:12:59 -04:00
Speed_intel.rst
reorder punctuation and quotation characters for clarity
2022-09-12 19:02:46 -04:00
Speed_kokkos.rst
consolidate pair-wise vs pairwise spelling
2022-01-21 10:48:35 -05:00
Speed_measure.rst
correct docs about how to get synchronized timings
2022-06-22 10:24:56 -04:00
Speed_omp.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
Speed_opt.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
Speed_packages.rst
cosmetic changes for consistency
2021-09-07 19:12:59 -04:00
Speed_tips.rst
…
Speed.rst
update title in reference to accelerator section
2021-10-11 17:26:24 -04:00
suffix.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
tad.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
temper_grem.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
temper_npt.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
temper.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
thermo_modify.rst
Resolve conflicts with devel branch
2022-08-05 23:30:41 -05:00
thermo_style.rst
remove discussion of mode
2022-04-25 17:01:15 -06:00
thermo.rst
refactor thermo output processing and add new yaml thermo style
2022-03-19 16:39:09 -04:00
third_order.rst
replace image with embedded latex text
2022-05-04 17:50:25 -04:00
timer.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
timestep.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
Tools.rst
update GPU container definitions for CUDA 11.7 and singularity -> apptainer
2022-06-08 08:19:54 -04:00
uncompute.rst
convert remaining style doc sections to be a logical header
2020-08-21 23:33:41 -04:00
undump.rst
convert remaining style doc sections to be a logical header
2020-08-21 23:33:41 -04:00
unfix.rst
convert remaining style doc sections to be a logical header
2020-08-21 23:33:41 -04:00
units.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
variable.rst
correct label2type() function documentation
2022-09-06 22:03:27 -04:00
velocity.rst
allow for command-line setting of initial temp
2021-08-26 11:52:07 -06:00
write_coeff.rst
…
write_data.rst
de-doc multiple label maps
2022-08-09 12:01:47 -04:00
write_dump.rst
Update docs for COMPRESS styles
2020-09-01 12:17:08 -04:00
write_restart.rst
document both, CMake and traditional procedure to enable MPIIO
2020-10-11 12:18:26 -04:00