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lammps/doc/src
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alphataubio 590c7dcf8f Merge branch 'lammps:develop' into spica-kk
2024-07-25 13:54:44 -04:00
..
_ext
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99
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2001
getting out of the insurance business :-)
2023-01-23 16:45:41 -05:00
img
Revert "revert more general doc changes. those are moved to a separate branch for further edits."
2024-01-18 18:14:41 -05:00
JPG
update documentation for file viewer feature
2024-07-21 19:10:15 -04:00
PDF
Update Colvars library to version 2023-05-01
2023-05-17 13:29:00 -04:00
.gitignore
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accel_styles.rst
…
angle_amoeba.rst
…
angle_charmm.rst
integrate into manual and add cross-references for CHARMM styles
2024-01-05 18:17:36 -05:00
angle_class2.rst
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angle_coeff.rst
…
angle_cosine_buck6d.rst
…
angle_cosine_delta.rst
…
angle_cosine_periodic.rst
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angle_cosine_shift_exp.rst
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angle_cosine_shift.rst
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angle_cosine_squared_restricted.rst
update version tags for feature release
2024-04-16 19:47:12 -04:00
angle_cosine_squared.rst
…
angle_cosine.rst
…
angle_cross.rst
…
angle_dipole.rst
consistently apply \vec{} macro to only the first text/character and not subscripts
2023-04-13 20:06:35 -04:00
angle_fourier_simple.rst
…
angle_fourier.rst
…
angle_gaussian.rst
expand valid range of bond/angle style gaussian. update docs and tests.
2022-11-21 22:28:44 -05:00
angle_harmonic.rst
…
angle_hybrid.rst
…
angle_lepton.rst
update version tags for feature release
2024-02-07 05:03:20 -05:00
angle_mesocnt.rst
…
angle_mm3.rst
…
angle_none.rst
…
angle_quartic.rst
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angle_spica.rst
updated pair style and angle style /kk in docs
2024-06-05 19:56:29 -04:00
angle_style.rst
Update angle_style.rst
2024-03-28 15:47:37 +01:00
angle_table.rst
implement angle_write command
2022-12-24 22:52:16 -05:00
angle_write.rst
update versions strings for the next feature release
2023-02-03 11:39:50 -05:00
angle_zero.rst
…
angles.rst
…
atc_add_molecule.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
atc_add_species.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
atc_atom_element_map.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
atc_atom_weight.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
atc_atomic_charge.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
atc_boundary_dynamics.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
atc_boundary_faceset.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
atc_boundary_type.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
atc_consistent_fe_initialization.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
atc_control_localized_lambda.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
atc_control_momentum.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
atc_control_thermal.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
atc_decomposition.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
atc_electron_integration.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
atc_equilibrium_start.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
atc_extrinsic_exchange.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
atc_fe_md_boundary.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
atc_filter_scale.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
atc_filter_type.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
atc_fix_flux.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
atc_fix.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
atc_hardy_computes.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
atc_hardy_fields.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
atc_hardy_gradients.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
atc_hardy_kernel.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
atc_hardy_on_the_fly.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
atc_hardy_rates.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
atc_initial.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
atc_internal_element_set.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
atc_internal_quadrature.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
atc_kernel_bandwidth.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
atc_lumped_lambda_solve.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
atc_mask_direction.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
atc_mass_matrix.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
atc_material.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
atc_mesh_add_to_nodeset.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
atc_mesh_create_elementset.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
atc_mesh_create_faceset_box.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
atc_mesh_create_faceset_plane.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
atc_mesh_create_nodeset.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
atc_mesh_create.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
atc_mesh_delete_elements.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
atc_mesh_nodeset_to_elementset.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
atc_mesh_output.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
atc_mesh_quadrature.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
atc_mesh_read.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
atc_mesh_write.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
atc_output_boundary_integral.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
atc_output_contour_integral.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
atc_output_nodeset.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
atc_output_volume_integral.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
atc_output.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
atc_pair_interactions.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
atc_poisson_solver.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
atc_read_restart.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
atc_remove_molecule.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
atc_remove_source.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
atc_remove_species.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
atc_reset_atomic_reference.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
atc_reset_time.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
atc_sample_frequency.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
atc_set_reference_pe.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
atc_source_integration.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
atc_source.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
atc_temperature_definition.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
atc_time_filter.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
atc_time_integration.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
atc_track_displacement.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
atc_unfix_flux.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
atc_unfix.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
atc_write_atom_weights.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
atc_write_restart.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
atom_modify.rst
spelling fixes
2024-07-03 19:17:11 -04:00
atom_style.rst
Proofing RHEO package
2024-06-28 17:07:23 -06:00
balance.rst
fix spelling issues
2023-03-07 19:41:50 -05:00
Bibliography.rst
Add wall_flow documentation
2024-02-07 13:55:27 +03:00
bond_bpm_rotational.rst
Moving line break in BPM doc pages for link, fixing prop/atom syntax
2023-08-01 12:54:23 -06:00
bond_bpm_spring.rst
Moving line break in BPM doc pages for link, fixing prop/atom syntax
2023-08-01 12:54:23 -06:00
bond_class2.rst
…
bond_coeff.rst
Missing key word in fix/ave/chunk docs, edits to bond_coeff docs
2022-10-13 14:42:10 -05:00
bond_fene_expand.rst
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bond_fene.rst
Fixing typo in equation for fene/nm
2023-02-24 12:27:53 +02:00
bond_gaussian.rst
expand valid range of bond/angle style gaussian. update docs and tests.
2022-11-21 22:28:44 -05:00
bond_gromos.rst
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bond_harmonic_restrain.rst
update version strings to 28 March 2023 for upcoming release
2023-03-25 06:14:52 -04:00
bond_harmonic_shift_cut.rst
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bond_harmonic_shift.rst
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bond_harmonic.rst
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bond_hybrid.rst
Need to update index as well
2024-06-05 09:05:13 -06:00
bond_lepton.rst
update version tags for feature release
2024-02-07 05:03:20 -05:00
bond_mesocnt.rst
…
bond_mm3.rst
make \AA macro available in :math: for HTML and PDF
2022-10-01 20:58:48 -04:00
bond_morse.rst
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bond_none.rst
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bond_nonlinear.rst
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bond_oxdna.rst
rename CG-DNA potential files
2024-06-20 14:33:26 -04:00
bond_quartic.rst
clarify LJ energy function component of the quartic bond style
2022-09-30 19:48:56 -04:00
bond_rheo_shell.rst
Flipping doc reference name
2024-06-28 17:27:13 -06:00
bond_special.rst
…
bond_style.rst
Proofing RHEO package
2024-06-28 17:07:23 -06:00
bond_table.rst
update/correct section header (this is not a fix)
2023-03-03 17:17:07 -05:00
bond_write.rst
fix broken doc links
2023-03-04 17:03:07 -05:00
bond_zero.rst
…
bonds.rst
…
boundary.rst
loads of spelling fixes
2023-12-01 15:54:54 -05:00
Build_basics.rst
Remove lammps-shell tool as it has been superseded by LAMMPS-GUI
2024-07-22 06:43:10 -04:00
Build_cmake.rst
minor updates for using presets. mention macos multi-arch preset
2023-09-21 19:10:36 -04:00
Build_development.rst
update list of available sanitizers for Fedora 40 and GCC 14
2024-07-03 22:02:35 -04:00
Build_diskspace.rst
…
Build_extras.rst
document GSL dependency and provide build instructions for RHEO package
2024-07-03 19:07:19 -04:00
Build_link.rst
use pkg-config instead of pkgconf consistently, since the latter comes with compatibility to the former
2024-07-03 21:21:35 -04:00
Build_make.rst
use macOS consistently (missed a few places in the last round)
2023-05-06 22:40:58 -04:00
Build_manual.rst
spelling
2023-05-19 00:40:45 -04:00
Build_package.rst
syncing table in build_packages/extra
2024-07-09 15:06:18 -06:00
Build_settings.rst
update version tags for feature release
2024-02-07 05:03:20 -05:00
Build_windows.rst
…
Build.rst
some more languagtool.org suggested updates
2023-01-23 05:15:34 -05:00
change_box.rst
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Classes_atom.rst
…
Classes_input.rst
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Classes_lammps.rst
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Classes.rst
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clear.rst
delete atomfile style variables with clear command
2022-10-18 07:34:06 -04:00
comm_modify.rst
Fixing merge conflicts
2023-03-20 14:19:58 -06:00
comm_style.rst
…
Commands_all.rst
add dihedral_write command
2022-12-25 07:01:37 -05:00
Commands_bond.rst
Merge branch 'lammps:develop' into spica-kk
2024-07-25 13:54:44 -04:00
Commands_category.rst
update documentation for removal of box command
2022-11-21 14:04:58 -05:00
Commands_compute.rst
Merge branch 'develop' into rheo
2024-07-03 03:42:44 -04:00
Commands_dump.rst
update documentation for removal of MPIIO package
2023-08-20 22:17:03 -04:00
Commands_fix.rst
Proofing RHEO package
2024-06-28 17:07:23 -06:00
Commands_input.rst
…
Commands_kspace.rst
…
commands_list.rst
add dihedral_write command
2022-12-25 07:01:37 -05:00
Commands_pair.rst
Merge branch 'lammps:develop' into spica-kk
2024-07-25 13:54:44 -04:00
Commands_parse.rst
…
Commands_removed.rst
Remove lammps-shell tool as it has been superseded by LAMMPS-GUI
2024-07-22 06:43:10 -04:00
Commands_structure.rst
…
Commands.rst
…
compute_ackland_atom.rst
…
compute_adf.rst
make computes rdf and adf error out multi cutoff neighbor lists if needed
2024-03-03 12:27:39 -05:00
compute_angle_local.rst
…
compute_angle.rst
…
compute_angmom_chunk.rst
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compute_ave_sphere_atom.rst
error out in compute ave/sphere/atom and efield/wolf/atom with multi-cutoff neighborlists
2024-03-03 12:46:20 -05:00
compute_basal_atom.rst
…
compute_body_local.rst
…
compute_bond_local.rst
Adding option to doc files, clarifying normal forces in compute pair/bond local
2023-05-19 13:51:53 -06:00
compute_bond.rst
…
compute_born_matrix.rst
…
compute_centro_atom.rst
…
compute_chunk_atom.rst
make \AA macro available in :math: for HTML and PDF
2022-10-01 20:58:48 -04:00
compute_chunk_spread_atom.rst
…
compute_cluster_atom.rst
…
compute_cna_atom.rst
getting out of the insurance business :-)
2023-01-23 16:45:41 -05:00
compute_cnp_atom.rst
…
compute_com_chunk.rst
…
compute_com.rst
…
compute_composition_atom.rst
compute composition/atom doesn't seem to be compatible with multi neighbor lists
2024-03-03 12:51:48 -05:00
compute_contact_atom.rst
rattler documentation
2023-06-15 23:06:50 -06:00
compute_coord_atom.rst
…
compute_count_type.rst
Update doc/src/compute_count_type.rst
2024-04-23 23:32:27 -04:00
compute_damage_atom.rst
reference the Howto from the rest of the manual. Spelling fixes.
2022-09-29 07:43:01 -04:00
compute_dihedral_local.rst
…
compute_dihedral.rst
…
compute_dilatation_atom.rst
reference the Howto from the rest of the manual. Spelling fixes.
2022-09-29 07:43:01 -04:00
compute_dipole_chunk.rst
update version strings to 28 March 2023 for upcoming release
2023-03-25 06:14:52 -04:00
compute_dipole.rst
update version strings to 28 March 2023 for upcoming release
2023-03-25 06:14:52 -04:00
compute_displace_atom.rst
Fixed remaining discrepancies between lists of keywords and doc of them
2022-10-13 23:00:13 -05:00
compute_dpd_atom.rst
…
compute_dpd.rst
…
compute_edpd_temp_atom.rst
…
compute_efield_atom.rst
…
compute_efield_wolf_atom.rst
error out in compute ave/sphere/atom and efield/wolf/atom with multi-cutoff neighborlists
2024-03-03 12:46:20 -05:00
compute_entropy_atom.rst
make \AA macro available in :math: for HTML and PDF
2022-10-01 20:58:48 -04:00
compute_erotate_asphere.rst
…
compute_erotate_rigid.rst
…
compute_erotate_sphere_atom.rst
…
compute_erotate_sphere.rst
KOKKOS updates
2023-04-18 22:01:39 -04:00
compute_event_displace.rst
…
compute_fabric.rst
incorporating feedback
2024-02-26 12:09:19 -07:00
compute_fep_ta.rst
add some more versionadded tags, now mostly complete for 2022
2022-09-25 09:41:55 -04:00
compute_fep.rst
…
compute_global_atom.rst
…
compute_group_group.rst
…
compute_gyration_chunk.rst
…
compute_gyration_shape_chunk.rst
…
compute_gyration_shape.rst
…
compute_gyration.rst
…
compute_heat_flux.rst
…
compute_hexorder_atom.rst
…
compute_hma.rst
…
compute_improper_local.rst
…
compute_improper.rst
…
compute_inertia_chunk.rst
…
compute_ke_atom_eff.rst
…
compute_ke_atom.rst
…
compute_ke_eff.rst
…
compute_ke_rigid.rst
…
compute_ke.rst
…
compute_mliap.rst
fixed whitespace in docs
2024-03-22 16:51:27 -06:00
compute_modify.rst
use dynamic/dof and extra/dof consistently. remove compatibility note in docs.
2023-06-30 16:27:07 -04:00
compute_momentum.rst
…
compute_msd_chunk.rst
getting out of the insurance business :-)
2023-01-23 16:45:41 -05:00
compute_msd_nongauss.rst
…
compute_msd.rst
…
compute_nbond_atom.rst
More updates for oxidation, more doc pages
2024-03-31 21:40:34 -06:00
compute_omega_chunk.rst
…
compute_orientorder_atom.rst
…
compute_pace.rst
update version tags for feature release
2024-02-07 05:03:20 -05:00
compute_pair_local.rst
Adding option to doc files, clarifying normal forces in compute pair/bond local
2023-05-19 13:51:53 -06:00
compute_pair.rst
…
compute_pe_atom.rst
…
compute_pe.rst
…
compute_plasticity_atom.rst
…
compute_pod_atom.rst
fix typo
2024-06-26 19:58:09 -04:00
compute_pressure_alchemy.rst
update version strings to 28 March 2023 for upcoming release
2023-03-25 06:14:52 -04:00
compute_pressure_uef.rst
…
compute_pressure.rst
add clarifications
2024-02-16 14:31:35 -05:00
compute_property_atom.rst
Moving temp/heat keywords out of dump to compute prop/atom
2024-02-23 14:31:40 -07:00
compute_property_chunk.rst
Update from master
2022-10-12 09:49:55 -06:00
compute_property_grid.rst
update release date to 21 November 2023
2023-11-19 05:40:05 -05:00
compute_property_local.rst
Update from master
2022-10-12 09:49:55 -06:00
compute_ptm_atom.rst
consistently apply \vec{} macro to only the first text/character and not subscripts
2023-04-13 20:06:35 -04:00
compute_rattlers_atom.rst
update version tags for feature release
2024-02-07 05:03:20 -05:00
compute_rdf.rst
compute_rdf: direct type label support
2024-05-12 16:11:36 -04:00
compute_reaxff_atom.rst
update version tags for feature release
2024-02-07 05:03:20 -05:00
compute_reduce_chunk.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
compute_reduce.rst
add examples using the inputs keyword
2024-02-17 12:14:09 -05:00
compute_rheo_property_atom.rst
Proofing RHEO package
2024-06-28 17:07:23 -06:00
compute_rigid_local.rst
make compute rigid/local consistent with other "possible attributes" docs
2022-10-17 14:51:10 -05:00
compute_saed.rst
correct dpi to get proper image scaling in PDF output
2023-12-02 16:34:32 -05:00
compute_slcsa_atom.rst
update version tags for feature release
2024-02-07 05:03:20 -05:00
compute_slice.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
compute_smd_contact_radius.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
compute_smd_damage.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
compute_smd_hourglass_error.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
compute_smd_internal_energy.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
compute_smd_plastic_strain_rate.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
compute_smd_plastic_strain.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
compute_smd_rho.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
compute_smd_tlsph_defgrad.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
compute_smd_tlsph_dt.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
compute_smd_tlsph_num_neighs.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
compute_smd_tlsph_shape.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
compute_smd_tlsph_strain_rate.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
compute_smd_tlsph_strain.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
compute_smd_tlsph_stress.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
compute_smd_triangle_vertices.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
compute_smd_ulsph_effm.rst
fix a bunch more broken links
2023-02-19 20:48:54 -05:00
compute_smd_ulsph_num_neighs.rst
fix a bunch more broken links
2023-02-19 20:48:54 -05:00
compute_smd_ulsph_strain_rate.rst
fix a bunch more broken links
2023-02-19 20:48:54 -05:00
compute_smd_ulsph_strain.rst
fix a bunch more broken links
2023-02-19 20:48:54 -05:00
compute_smd_ulsph_stress.rst
fix a bunch more broken links
2023-02-19 20:48:54 -05:00
compute_smd_vol.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
compute_sna_atom.rst
reformat to conform to LAMMPS writing style
2023-11-29 02:11:44 -05:00
compute_sph_e_atom.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
compute_sph_rho_atom.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
compute_sph_t_atom.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
compute_spin.rst
…
compute_stress_atom.rst
add clarifications
2024-02-16 14:31:35 -05:00
compute_stress_cartesian.rst
Merge pull request #3818 from akohlmey/next_release
2023-06-15 14:30:40 -04:00
compute_stress_curvilinear.rst
documentation formatting and spelling fixes
2023-06-14 22:08:30 -04:00
compute_stress_mop.rst
Update compute_stress_mop.rst
2024-05-13 21:26:01 +02:00
compute_tally.rst
document additional pair style restrictions for /tally computes
2023-04-26 14:57:50 -04:00
compute_tdpd_cc_atom.rst
…
compute_temp_asphere.rst
use dynamic/dof and extra/dof consistently. remove compatibility note in docs.
2023-06-30 16:27:07 -04:00
compute_temp_body.rst
use dynamic/dof and extra/dof consistently. remove compatibility note in docs.
2023-06-30 16:27:07 -04:00
compute_temp_chunk.rst
…
compute_temp_com.rst
…
compute_temp_cs.rst
correct inconsistent spelling of name
2022-09-23 10:33:44 -04:00
compute_temp_deform_eff.rst
…
compute_temp_deform.rst
…
compute_temp_drude.rst
use dynamic/dof and extra/dof consistently. remove compatibility note in docs.
2023-06-30 16:27:07 -04:00
compute_temp_eff.rst
…
compute_temp_partial.rst
…
compute_temp_profile.rst
…
compute_temp_ramp.rst
make \AA macro available in :math: for HTML and PDF
2022-10-01 20:58:48 -04:00
compute_temp_region_eff.rst
…
compute_temp_region.rst
…
compute_temp_rotate.rst
…
compute_temp_sphere.rst
use dynamic/dof and extra/dof consistently. remove compatibility note in docs.
2023-06-30 16:27:07 -04:00
compute_temp_uef.rst
…
compute_temp.rst
clarify the temperature computation in compute temp
2023-06-27 17:53:06 -04:00
compute_ti.rst
…
compute_torque_chunk.rst
…
compute_vacf.rst
…
compute_vcm_chunk.rst
…
compute_viscosity_cos.rst
…
compute_voronoi_atom.rst
update release date to 21 November 2023
2023-11-19 05:40:05 -05:00
compute_xrd.rst
recreate compute xrd mesh image with reasonable dpi setting and used PNG format
2023-12-01 00:37:42 -05:00
compute.rst
Merge branch 'develop' into rheo
2024-07-03 03:42:44 -04:00
computes.rst
…
Cplusplus.rst
…
create_atoms.rst
Merge branch 'lammps:develop' into improve_type_label_support
2024-06-13 19:26:42 -04:00
create_bonds.rst
update docs for create_bonds
2023-06-28 10:06:31 -04:00
create_box.rst
better documention and error checking for 2d general triclinic
2024-04-08 10:43:20 -06:00
delete_atoms.rst
fix sphinx formatting issue
2022-11-28 14:00:26 -05:00
delete_bonds.rst
delete_bonds: direct type label support
2024-05-11 14:05:48 -04:00
Developer_atom.rst
spelling
2023-05-04 16:04:08 -04:00
Developer_code_design.rst
starting grammar, punctuation, and spelling review for developer info sections
2023-02-04 22:00:35 -05:00
Developer_comm_ops.rst
fix a bunch more broken links
2023-02-19 20:48:54 -05:00
Developer_flow.rst
starting grammar, punctuation, and spelling review for developer info sections
2023-02-04 22:00:35 -05:00
Developer_grid.rst
small doc fix from @sjplimp
2023-08-02 17:56:02 -04:00
Developer_notes.rst
implement suggestions from @jtclemm
2023-03-21 21:36:27 -04:00
Developer_org.rst
starting grammar, punctuation, and spelling review for developer info sections
2023-02-04 22:00:35 -05:00
Developer_par_comm.rst
starting grammar, punctuation, and spelling review for developer info sections
2023-02-04 22:00:35 -05:00
Developer_par_long.rst
starting grammar, punctuation, and spelling review for developer info sections
2023-02-04 22:00:35 -05:00
Developer_par_neigh.rst
starting grammar, punctuation, and spelling review for developer info sections
2023-02-04 22:00:35 -05:00
Developer_par_openmp.rst
starting grammar, punctuation, and spelling review for developer info sections
2023-02-04 22:00:35 -05:00
Developer_par_part.rst
starting grammar, punctuation, and spelling review for developer info sections
2023-02-04 22:00:35 -05:00
Developer_parallel.rst
revise based on suggestions from languagetool.org
2023-01-22 09:50:27 -05:00
Developer_platform.rst
include new platform call in docs
2023-12-14 11:21:09 -05:00
Developer_plugins.rst
use consistent pygments language tags
2022-12-04 16:59:17 -05:00
Developer_unittest.rst
fix typo and remove unnecessary quotes
2023-12-18 18:52:42 -05:00
Developer_updating.rst
add note for porting code containing the removed Atoms::count_words() functions
2024-03-03 07:47:14 -05:00
Developer_utils.rst
update docs for fully integrating utils::bounds_typlabel() function
2024-06-25 18:23:07 -04:00
Developer_write_fix.rst
a few possible typos
2023-03-21 21:32:20 -06:00
Developer_write_pair.rst
add explanation about integrating new styles into packages
2024-06-28 18:32:58 -04:00
Developer_write.rst
sync with develop
2023-03-29 14:48:24 -06:00
Developer.rst
Start document about per-atom properties and atom data access
2023-05-04 15:57:11 -04:00
dielectric.rst
…
dihedral_charmm.rst
integrate into manual and add cross-references for CHARMM styles
2024-01-05 18:17:36 -05:00
dihedral_class2.rst
…
dihedral_coeff.rst
…
dihedral_cosine_shift_exp.rst
…
dihedral_cosine_squared_restricted.rst
update version tags for feature release
2024-04-16 19:47:12 -04:00
dihedral_fourier.rst
…
dihedral_harmonic.rst
…
dihedral_helix.rst
…
dihedral_hybrid.rst
…
dihedral_lepton.rst
update versions strings for the next feature release
2023-02-03 11:39:50 -05:00
dihedral_multi_harmonic.rst
…
dihedral_nharmonic.rst
fix typo
2022-12-26 16:47:37 -05:00
dihedral_none.rst
…
dihedral_opls.rst
…
dihedral_quadratic.rst
…
dihedral_spherical.rst
…
dihedral_style.rst
Update dihedral_style.rst
2024-03-29 11:18:11 +01:00
dihedral_table.rst
getting out of the insurance business :-)
2023-01-23 16:45:41 -05:00
dihedral_write.rst
update versions strings for the next feature release
2023-02-03 11:39:50 -05:00
dihedral_zero.rst
…
dihedrals.rst
…
dimension.rst
…
displace_atoms.rst
make \AA macro available in :math: for HTML and PDF
2022-10-01 20:58:48 -04:00
dump_adios.rst
…
dump_cfg_uef.rst
…
dump_h5md.rst
convert URLs to https where possible, check URLs for bit rot and update or remove
2022-09-24 08:02:18 -04:00
dump_image.rst
update release date to 21 November 2023
2023-11-19 05:40:05 -05:00
dump_modify.rst
mention dump_modify binary for VTK style dumps
2024-07-22 06:14:31 -04:00
dump_molfile.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
dump_netcdf.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
dump_vtk.rst
getting out of the insurance business :-)
2023-01-23 16:45:41 -05:00
dump.rst
dump custom, 'typelabel' attribute
2024-05-27 23:58:58 -04:00
dumps.rst
…
dynamical_matrix.rst
small doc style update
2023-07-15 12:36:41 -04:00
echo.rst
…
Errors_bugs.rst
…
Errors_common.rst
getting out of the insurance business :-)
2023-01-23 16:45:41 -05:00
Errors_debug.rst
fix outdated or broken URLs and typos in URLs
2023-02-19 16:11:22 -05:00
Errors_details.rst
add "Incorrect format in ... section of data file" to Error_details and url
2024-03-26 23:56:38 -04:00
Errors_messages.rst
support for other vector fields in read_data
2023-09-13 09:29:56 -06:00
Errors_warnings.rst
support for other vector fields in read_data
2023-09-13 09:29:56 -06:00
Errors.rst
…
Examples.rst
Draft examples, patches, clarify interface reconstruct in RHEO
2024-05-19 11:22:52 -06:00
fitpod_command.rst
various documentation fixups, dedup references, wrap paragraphs, adjust underlines, add missing index
2024-06-26 07:26:03 -04:00
fix_accelerate_cos.rst
…
fix_acks2_reaxff.rst
make \AA macro available in :math: for HTML and PDF
2022-10-01 20:58:48 -04:00
fix_adapt_fep.rst
finish adapt docs
2024-05-11 19:49:19 -04:00
fix_adapt.rst
finish adapt docs
2024-05-11 19:49:19 -04:00
fix_add_heat.rst
Proofing RHEO package
2024-06-28 17:07:23 -06:00
fix_addforce.rst
getting out of the insurance business :-)
2023-01-23 16:45:41 -05:00
fix_addtorque.rst
…
fix_alchemy.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_amoeba_bitorsion.rst
fix errors in fix amoeba/pitorsion doc page
2024-06-21 07:51:49 -06:00
fix_amoeba_pitorsion.rst
one more change
2024-06-21 08:00:50 -06:00
fix_append_atoms.rst
make \AA macro available in :math: for HTML and PDF
2022-10-01 20:58:48 -04:00
fix_atc.rst
…
fix_atom_swap.rst
Merge branch 'lammps:develop' into improve_type_label_support
2024-06-13 19:26:42 -04:00
fix_ave_atom.rst
…
fix_ave_chunk.rst
update version tags for feature release
2024-04-16 19:47:12 -04:00
fix_ave_correlate_long.rst
fix bug in option arg parsing of fix ave/correlate, also update doc page for fix ave/correlate/long
2024-03-29 14:27:43 -06:00
fix_ave_correlate.rst
fix bug in option arg parsing of fix ave/correlate, also update doc page for fix ave/correlate/long
2024-03-29 14:27:43 -06:00
fix_ave_grid.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_ave_histo.rst
update version tags for feature release
2024-04-16 19:47:12 -04:00
fix_ave_spatial_sphere.rst
fix a bunch more broken links
2023-02-19 20:48:54 -05:00
fix_ave_spatial.rst
fix a bunch more broken links
2023-02-19 20:48:54 -05:00
fix_ave_time.rst
update version tags for feature release
2024-04-16 19:47:12 -04:00
fix_aveforce.rst
…
fix_balance.rst
update version tags for feature release
2024-04-16 19:47:12 -04:00
fix_bocs.rst
removed an extra space
2022-10-14 18:27:21 -05:00
fix_bond_break.rst
bond/break: direct type label support
2024-05-11 16:40:40 -04:00
fix_bond_create.rst
bond/create: direct type label support
2024-05-11 16:30:21 -04:00
fix_bond_react.rst
Merge pull request #3569 from jrgissing/type-labels-bond/react-examples
2023-01-05 19:22:43 -05:00
fix_bond_swap.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_box_relax.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_brownian.rst
Fixed a couple more mathbf->boldsymbol errors in fix brownian doc
2022-10-15 10:47:33 -05:00
fix_charge_regulation.rst
charge/regulation: direct type label support
2024-05-12 17:32:03 -04:00
fix_cmap.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_colvars.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_controller.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_damping_cundall.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_deform_pressure.rst
add warning about overflowing image flags and how to prevent that
2024-07-12 23:43:14 -04:00
fix_deform.rst
add warning about overflowing image flags and how to prevent that
2024-07-12 23:43:14 -04:00
fix_deposit.rst
restore numerical examples
2024-04-23 10:13:50 -04:00
fix_dpd_energy.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_dpd_source.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_drag.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_drude_transform.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_drude.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_dt_reset.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_efield.rst
Merge pull request #3909 from ndtrung81/kk-updates
2023-10-13 04:58:33 -04:00
fix_ehex.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_electrode.rst
Merge branch 'develop' into electrode
2024-07-03 15:17:43 -04:00
fix_electron_stopping.rst
Merge branch 'develop' into doc-fixes
2023-07-12 11:41:15 -04:00
fix_enforce2d.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_eos_cv.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_eos_table_rx.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_eos_table.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_evaporate.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_external.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_ffl.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_filter_corotate.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_flow_gauss.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_freeze.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_gcmc.rst
Merge branch 'lammps:develop' into improve_type_label_support
2024-06-13 19:26:42 -04:00
fix_gld.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_gle.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_gravity.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_grem.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_halt.rst
correct info about fix halt default setting
2023-12-14 10:59:30 -05:00
fix_heat_flow.rst
Documentation for fix add/heat
2024-04-24 13:04:51 -06:00
fix_heat.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_hyper_global.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_hyper_local.rst
Update fix_hyper_local.rst
2024-04-22 14:00:38 -04:00
fix_imd.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_indent.rst
improve fix indent documentation
2024-07-06 09:55:22 -04:00
fix_ipi.rst
correct capitalization
2024-06-25 13:33:29 -04:00
fix_langevin_drude.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_langevin_eff.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_langevin_spin.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_langevin.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_lb_fluid.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_lb_momentum.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_lb_viscous.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_lineforce.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_manifoldforce.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_mdi_qm.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_mdi_qmmm.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_meso_move.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_modify_atc_commands.rst
…
fix_modify.rst
use dynamic/dof and extra/dof consistently. remove compatibility note in docs.
2023-06-30 16:27:07 -04:00
fix_mol_swap.rst
Merge branch 'lammps:develop' into improve_type_label_support
2024-06-13 19:26:42 -04:00
fix_momentum.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_move.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_msst.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_mvv_dpd.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_neb_spin.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_neb.rst
formatting update, correct references
2024-01-20 10:53:04 -05:00
fix_nh_eff.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_nh_uef.rst
Update fix_nh_uef.rst
2023-12-06 08:14:12 -05:00
fix_nh.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_nonaffine_displacement.rst
Tweaking doc text
2024-04-23 21:02:02 -06:00
fix_nph_asphere.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_nph_body.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_nph_sphere.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_nphug.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_npt_asphere.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_npt_body.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_npt_cauchy.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_npt_sphere.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_numdiff_virial.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_numdiff.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_nve_asphere_noforce.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_nve_asphere.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_nve_awpmd.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_nve_body.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_nve_bpm_sphere.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_nve_dot.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_nve_dotc_langevin.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_nve_eff.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_nve_limit.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_nve_line.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_nve_manifold_rattle.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_nve_noforce.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_nve_sphere.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_nve_spin.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_nve_tri.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_nve.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_nvk.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_nvt_asphere.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_nvt_body.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_nvt_manifold_rattle.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_nvt_sllod_eff.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_nvt_sllod.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_nvt_sphere.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_oneway.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_orient_eco.rst
…
fix_orient.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_pafi.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_pair.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_phonon.rst
clarify docs about fix phonon dependency on KSPACE
2023-12-10 15:27:50 -05:00
fix_pimd.rst
update doc
2024-07-20 22:46:06 -04:00
fix_planeforce.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_plumed.rst
fix cut-n-paste issue
2023-09-14 00:27:35 -04:00
fix_poems.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_polarize.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_pour.rst
replace UTF-8 characters with their ASCII counterparts
2023-10-30 23:24:54 -04:00
fix_precession_spin.rst
consistently apply \vec{} macro to only the first text/character and not subscripts
2023-04-13 20:06:35 -04:00
fix_press_berendsen.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_press_langevin.rst
Minor edits, mainly affecting friction keyword
2023-10-06 16:47:38 -06:00
fix_print.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_propel_self.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_property_atom.rst
Moving temp/heat keywords out of dump to compute prop/atom
2024-02-23 14:31:40 -07:00
fix_python_invoke.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_python_move.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_qbmsst.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_qeq_comb.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_qeq_reaxff.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_qeq.rst
this limitation no longer applies
2024-01-14 07:53:33 -05:00
fix_qmmm.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_qtb.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_reaxff_bonds.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_reaxff_species.rst
add reaxff/species delete citation
2024-05-16 14:49:33 -04:00
fix_recenter.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_restrain.rst
…
fix_rheo_oxidation.rst
Proofing RHEO package
2024-06-28 17:07:23 -06:00
fix_rheo_pressure.rst
spelling fixes
2024-07-03 19:17:11 -04:00
fix_rheo_thermal.rst
spelling fixes
2024-07-03 19:17:11 -04:00
fix_rheo_viscosity.rst
spelling fixes
2024-07-03 19:17:11 -04:00
fix_rheo.rst
spelling fixes
2024-07-03 19:17:11 -04:00
fix_rhok.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_rigid_meso.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_rigid.rst
Merge branch 'develop' into general-triclinic
2023-12-06 07:01:55 -05:00
fix_rx.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_saed_vtk.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_setforce.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_sgcmc.rst
whitespace
2024-06-18 20:46:32 -04:00
fix_shake.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_shardlow.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_smd_adjust_dt.rst
fix a bunch more broken links
2023-02-19 20:48:54 -05:00
fix_smd_integrate_tlsph.rst
fix a bunch more broken links
2023-02-19 20:48:54 -05:00
fix_smd_integrate_ulsph.rst
fix a bunch more broken links
2023-02-19 20:48:54 -05:00
fix_smd_move_triangulated_surface.rst
fix a bunch more broken links
2023-02-19 20:48:54 -05:00
fix_smd_setvel.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_smd_wall_surface.rst
fix a bunch more broken links
2023-02-19 20:48:54 -05:00
fix_smd.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_sph_stationary.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_sph.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_spring_chunk.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_spring_rg.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_spring_self.rst
Merge pull request #3909 from ndtrung81/kk-updates
2023-10-13 04:58:33 -04:00
fix_spring.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_srd.rst
find more misformatted references in ReST sources
2023-10-26 04:46:33 -04:00
fix_store_force.rst
rewrap docs
2024-07-11 13:39:44 -04:00
fix_store_state.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_temp_berendsen.rst
Update docs
2023-12-11 12:55:06 -07:00
fix_temp_csvr.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_temp_rescale_eff.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_temp_rescale.rst
Update docs
2023-12-11 12:55:06 -07:00
fix_tfmc.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_tgnh_drude.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_thermal_conductivity.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_ti_spring.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_tmd.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_ttm.rst
fix ttm doc formatting fixes
2024-03-29 02:50:30 -04:00
fix_tune_kspace.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_vector.rst
clarify docs
2023-08-04 21:37:20 -04:00
fix_viscosity.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_viscous_sphere.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_viscous.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_wall_body_polygon.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_wall_body_polyhedron.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_wall_ees.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_wall_flow.rst
update version tags for feature release
2024-04-16 19:47:12 -04:00
fix_wall_gran_region.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_wall_gran.rst
Clarifying BPM logic and removing spelling errors in doc
2024-06-12 14:44:13 -06:00
fix_wall_piston.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_wall_reflect_stochastic.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_wall_reflect.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_wall_region.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_wall_srd.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_wall.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
fix_widom.rst
Merge branch 'lammps:develop' into improve_type_label_support
2024-06-13 19:26:42 -04:00
fix.rst
Proofing RHEO package
2024-06-28 17:07:23 -06:00
fixes.rst
…
Fortran.rst
Remove lammps-shell tool as it has been superseded by LAMMPS-GUI
2024-07-22 06:43:10 -04:00
group2ndx.rst
update group2ndx/ndx2group docs
2024-06-17 15:02:43 -04:00
group.rst
remove bogus example
2024-04-22 15:27:53 -04:00
Howto_2d.rst
one more doc page
2024-04-08 10:53:14 -06:00
Howto_amoeba.rst
drop a few more command prompt characters
2023-01-06 00:00:14 -05:00
Howto_barostat.rst
…
Howto_bioFF.rst
reformate, make small corrections, align with other doc files and use sphinx-design to make html more compact
2024-06-26 07:30:50 -04:00
Howto_body.rst
correct typos and remove duplicate text
2024-04-10 12:56:43 -06:00
Howto_bpm.rst
Updating BPM reference information
2024-04-18 08:49:18 -06:00
Howto_broken_bonds.rst
spelling
2023-05-04 16:04:08 -04:00
Howto_chunk.rst
couple more doc tweaks
2024-07-11 19:17:09 -04:00
Howto_cmake.rst
Remove lammps-shell tool as it has been superseded by LAMMPS-GUI
2024-07-22 06:43:10 -04:00
Howto_coreshell.rst
getting out of the insurance business :-)
2023-01-23 16:45:41 -05:00
Howto_couple.rst
some more documentation updates
2023-03-29 17:48:16 -04:00
Howto_diffusion.rst
…
Howto_dispersion.rst
…
Howto_drude2.rst
…
Howto_drude.rst
…
Howto_elastic.rst
…
Howto_github.rst
reorganize the LAMMPS version and development description
2023-12-18 15:48:03 -05:00
Howto_granular.rst
Moving temp/heat keywords out of dump to compute prop/atom
2024-02-23 14:31:40 -07:00
Howto_grid.rst
revise based on suggestions from languagetool.org
2023-01-22 09:50:27 -05:00
Howto_kappa.rst
…
Howto_lammps_gui.rst
update documentation for file viewer feature
2024-07-21 19:10:15 -04:00
Howto_library.rst
revise a chunk of Howto pages with the help of languagetool.org
2023-02-05 18:09:36 -05:00
Howto_manifold.rst
convert URLs to https where possible, check URLs for bit rot and update or remove
2022-09-24 08:02:18 -04:00
Howto_mdi.rst
add versionadded tag for fix mdi/qmmm
2023-03-12 17:19:50 -04:00
Howto_moltemplate.rst
mention tutorial files location
2023-11-30 16:48:19 -05:00
Howto_multiple.rst
revise a chunk of Howto pages with the help of languagetool.org
2023-02-05 18:09:36 -05:00
Howto_nemd.rst
…
Howto_output.rst
update of a Howto_output doc page
2023-08-16 16:19:11 -06:00
Howto_peri.rst
revise based on suggestions from languagetool.org
2023-01-22 09:50:27 -05:00
Howto_polarizable.rst
…
Howto_pylammps.rst
for consistency with CMake 3.12+ we should set Python_EXECUTABLE instead of PYTHON_EXECUTABLE
2023-10-24 07:51:54 -04:00
Howto_replica.rst
revise a chunk of Howto pages with the help of languagetool.org
2023-02-05 18:09:36 -05:00
Howto_restart.rst
revise a chunk of Howto pages with the help of languagetool.org
2023-02-05 18:09:36 -05:00
Howto_rheo.rst
typo
2024-07-22 18:57:53 -04:00
Howto_spc.rst
make rigid water examples more realistic and consistent. avoid warnings.
2023-05-25 18:08:42 -04:00
Howto_spherical.rst
getting out of the insurance business :-)
2023-01-23 16:45:41 -05:00
Howto_spins.rst
whitespace
2022-09-26 13:12:04 -04:00
Howto_structured_data.rst
correct headings
2024-01-26 15:51:17 -05:00
Howto_temperature.rst
…
Howto_thermostat.rst
…
Howto_tip3p.rst
make rigid water examples more realistic and consistent. avoid warnings.
2023-05-25 18:08:42 -04:00
Howto_tip4p.rst
use Langevin thermostat with fix rigid/small instead of fix rigid/nvt/small
2023-12-10 09:50:51 -05:00
Howto_tip5p.rst
use Langevin thermostat with fix rigid/small instead of fix rigid/nvt/small
2023-12-10 09:50:51 -05:00
Howto_triclinic.rst
better documention and error checking for 2d general triclinic
2024-04-08 10:43:20 -06:00
Howto_type_labels.rst
Update Howto_type_labels.rst
2024-04-16 00:20:18 -04:00
Howto_viscosity.rst
…
Howto_viz.rst
revise a chunk of Howto pages with the help of languagetool.org
2023-02-05 18:09:36 -05:00
Howto_walls.rst
…
Howto_wsl.rst
fix a bunch more broken links
2023-02-19 20:48:54 -05:00
Howto.rst
Revert "Began CGDNA Howto"
2024-03-20 16:23:17 +00:00
hyper.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
if.rst
getting out of the insurance business :-)
2023-01-23 16:45:41 -05:00
improper_amoeba.rst
find more misformatted references in ReST sources
2023-10-26 04:46:33 -04:00
improper_class2.rst
…
improper_coeff.rst
…
improper_cossq.rst
improper styles moved to EXTRA-MOLECULE
2024-05-16 15:08:02 -04:00
improper_cvff.rst
…
improper_distance.rst
improper styles moved to EXTRA-MOLECULE
2024-05-16 15:08:02 -04:00
improper_distharm.rst
…
improper_fourier.rst
improper styles moved to EXTRA-MOLECULE
2024-05-16 15:08:02 -04:00
improper_harmonic.rst
…
improper_hybrid.rst
…
improper_inversion_harmonic.rst
…
improper_none.rst
…
improper_ring.rst
improper styles moved to EXTRA-MOLECULE
2024-05-16 15:08:02 -04:00
improper_sqdistharm.rst
…
improper_style.rst
…
improper_umbrella.rst
…
improper_zero.rst
…
impropers.rst
…
include.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
info.rst
update version tags for feature release
2024-02-07 05:03:20 -05:00
Install_conda.rst
use macOS consistently (missed a few places in the last round)
2023-05-06 22:40:58 -04:00
Install_git.rst
reorganize the LAMMPS version and development description
2023-12-18 15:48:03 -05:00
Install_linux.rst
Remove lammps-shell tool as it has been superseded by LAMMPS-GUI
2024-07-22 06:43:10 -04:00
Install_mac.rst
update documentation for removal of MPIIO package
2023-08-20 22:17:03 -04:00
Install_tarball.rst
clarify download info
2023-05-06 22:40:58 -04:00
Install_windows.rst
update documentation for removal of MPIIO package
2023-08-20 22:17:03 -04:00
Install.rst
more revisions based on suggestions from languagetool.org
2023-01-22 16:53:39 -05:00
Intro_authors.rst
some updates
2023-01-20 22:48:36 -05:00
Intro_citing.rst
add DOIs for recent stable releases
2024-03-11 22:40:21 -04:00
Intro_features.rst
small tweak
2024-04-16 20:07:30 -04:00
Intro_nonfeatures.rst
make references consistent
2023-09-28 14:31:32 -04:00
Intro_opensource.rst
convert URLs to https where possible, check URLs for bit rot and update or remove
2022-09-24 08:02:18 -04:00
Intro_overview.rst
revise based on suggestions from languagetool.org
2023-01-22 09:50:27 -05:00
Intro_portability.rst
Merge branch 'develop' into cmake-3.16
2023-08-03 17:39:15 -04:00
Intro_website.rst
remove obsolete links, links to point back to the manual, updates
2023-01-20 22:50:18 -05:00
Intro.rst
add page about portability
2023-01-20 23:40:41 -05:00
jump.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
kim_commands.rst
small documentation improvements
2022-12-16 22:09:30 -05:00
kspace_modify.rst
resolve formatting issues and add a few style tweaks from languagetool.org
2023-05-08 05:52:18 -04:00
kspace_style.rst
whitespace
2024-02-05 17:22:53 -05:00
label.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
labelmap.rst
Mention bonded force field primer from typelabel paper in bioFF howto
2024-06-26 07:27:11 -04:00
lattice.rst
better documention and error checking for 2d general triclinic
2024-04-08 10:43:20 -06:00
lepton_expression.rst
more documentation tweaks and corrections. make consistent across package styles
2022-12-24 15:38:58 -05:00
Library_add.rst
…
Library_atoms.rst
…
Library_config.rst
use consistent pygments language tags
2022-12-04 16:59:17 -05:00
Library_create.rst
use consistent pygments language tags
2022-12-04 16:59:17 -05:00
Library_execute.rst
use consistent pygments language tags
2022-12-04 16:59:17 -05:00
Library_neighbor.rst
…
Library_objects.rst
add documentation for new library APIs to set variables and changes to the old API
2024-01-24 04:14:03 -05:00
Library_properties.rst
update docs for new library function
2024-07-16 19:08:01 -04:00
Library_scatter.rst
Update Library_scatter.rst
2023-01-26 11:00:26 +02:00
Library_utility.rst
Added lammps_fix_external_get_force to C library utility doc page
2022-11-29 15:56:26 -06:00
Library.rst
update documentation for the fact that exceptions in LAMMPS are always used
2023-11-26 13:11:18 -05:00
log.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
Manual_version.rst
adjust heading levels
2023-12-23 12:16:53 -05:00
Manual.rst
list manual versions on Manual home page
2023-08-28 10:22:52 -06:00
mass.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
mdi.rst
another doc page change
2023-02-24 16:27:15 -07:00
min_modify.rst
update versions strings for the next feature release
2023-02-03 11:39:50 -05:00
min_spin.rst
Correcting some aspects of the SPIN package documentation.
2022-09-26 07:43:19 +02:00
min_style.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
minimize.rst
small doc style update
2023-07-15 12:36:41 -04:00
Modify_atom.rst
…
Modify_body.rst
…
Modify_bond.rst
expand docs for bond/angle/dihedral/improper styles
2022-11-07 23:52:23 -05:00
Modify_command.rst
…
Modify_compute.rst
…
Modify_contribute.rst
minor editing changes
2023-05-12 11:18:07 -06:00
Modify_dump.rst
…
Modify_fix.rst
…
Modify_gran_sub_mod.rst
fix spelling
2023-04-24 16:06:53 -04:00
Modify_kspace.rst
…
Modify_min.rst
…
Modify_overview.rst
minor editing changes
2023-05-12 11:18:07 -06:00
Modify_pair.rst
implement suggestions from @jtclemm
2023-03-21 21:36:27 -04:00
Modify_region.rst
…
Modify_requirements.rst
as a few details to the discussion of programming languages and their standards
2023-05-12 15:45:55 -04:00
Modify_style.rst
add notes about using static constexpr to programming style guide
2024-02-06 12:16:57 -05:00
Modify_thermo.rst
…
Modify_variable.rst
…
Modify.rst
minor editing changes
2023-05-12 11:18:07 -06:00
molecule.rst
update version tags for feature release
2024-02-07 05:03:20 -05:00
neb_spin.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
neb.rst
Fixed typo in NEB documentation (energy units --> dimensionless)
2024-01-24 14:52:42 -05:00
neigh_modify.rst
getting out of the insurance business :-)
2023-01-23 16:45:41 -05:00
neighbor.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
newton.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
next.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
package.rst
update version tags for feature release
2024-04-16 19:47:12 -04:00
Packages_details.rst
Merge pull request #4214 from jtclemm/rheo
2024-07-18 18:38:51 -04:00
Packages_list.rst
Merge conflicts
2024-06-24 14:09:33 -06:00
Packages.rst
more revisions based on suggestions from languagetool.org
2023-01-22 16:53:39 -05:00
pair_adp.rst
convert URLs to https where possible, check URLs for bit rot and update or remove
2022-09-24 08:02:18 -04:00
pair_agni.rst
…
pair_aip_water_2dm.rst
whitespace
2023-12-23 03:00:11 -05:00
pair_airebo.rst
small corrections
2024-02-22 09:15:18 -05:00
pair_amoeba.rst
correct LaTeX formatting issues reported at https://matsci.org/t/latex-math-in-pair-amoeba-rst/47987/1
2023-04-13 20:06:35 -04:00
pair_atm.rst
…
pair_awpmd.rst
…
pair_beck.rst
make more cases specifying cutoff Rc/r_c consistent
2023-12-01 05:49:20 -05:00
pair_body_nparticle.rst
…
pair_body_rounded_polygon.rst
…
pair_body_rounded_polyhedron.rst
correct typo and link in body particles doc
2023-11-16 10:35:02 -07:00
pair_bop.rst
…
pair_born_gauss.rst
update version string for release
2023-03-27 22:48:21 -04:00
pair_born.rst
…
pair_bpm_spring.rst
add .. versiondded:: tag to BPM package commands and restrictions text consistent
2022-11-07 22:57:32 -05:00
pair_brownian.rst
…
pair_buck6d_coul_gauss.rst
…
pair_buck_long.rst
…
pair_buck.rst
…
pair_charmm.rst
Revert "revert more general doc changes. those are moved to a separate branch for further edits."
2024-01-18 18:14:41 -05:00
pair_class2.rst
…
pair_coeff.rst
drop a few more command prompt characters
2023-01-06 00:00:14 -05:00
pair_colloid.rst
correct link
2023-04-06 11:42:19 -04:00
pair_comb.rst
…
pair_cosine_squared.rst
…
pair_coul_diel.rst
…
pair_coul_shield.rst
…
pair_coul_slater.rst
Updated the doc pages for sph/lj/gpu and sph/taitwater/gpu
2023-12-08 14:27:00 -06:00
pair_coul_tt.rst
…
pair_coul.rst
re-order entries
2024-07-11 11:37:42 -04:00
pair_cs.rst
update broken URLs
2022-09-26 12:09:45 -04:00
pair_dielectric.rst
fix spelling and table format issues. re-wrap paragraphs in doc sources.
2022-10-10 17:26:13 -04:00
pair_dipole.rst
consistently apply \vec{} macro to only the first text/character and not subscripts
2023-04-13 20:06:35 -04:00
pair_dpd_coul_slater_long.rst
Merge branch 'develop' into next-release
2024-06-26 19:50:27 -04:00
pair_dpd_ext.rst
use more obvious pair style dpd thermostat examples
2023-05-08 11:51:30 -04:00
pair_dpd_fdt.rst
consistently apply \vec{} macro to only the first text/character and not subscripts
2023-04-13 20:06:35 -04:00
pair_dpd.rst
use more obvious pair style dpd thermostat examples
2023-05-08 11:51:30 -04:00
pair_drip.rst
…
pair_dsmc.rst
document requirement of per-type masses
2024-02-22 04:34:22 -05:00
pair_e3b.rst
…
pair_eam.rst
rephrase warning about EAM deansity exceeding tabulated embedding term
2024-04-16 23:02:29 -04:00
pair_edip.rst
…
pair_eff.rst
…
pair_eim.rst
…
pair_exp6_rx.rst
…
pair_extep.rst
…
pair_fep_soft.rst
Updated doc pages for the added pair styles, added a cmake preset for gpu-cuda, added "comm_modify vel yes" to in.mdpd
2023-12-05 15:32:57 -06:00
pair_gauss.rst
update version strings to 28 March 2023 for upcoming release
2023-03-25 06:14:52 -04:00
pair_gayberne.rst
getting out of the insurance business :-)
2023-01-23 16:45:41 -05:00
pair_gran.rst
Fixing argument errors and adding note on datafiles to doc
2022-09-19 22:14:59 -06:00
pair_granular.rst
Limit CoeffRest gran damping to non-cohesive, prevent potential nans
2024-06-11 17:03:15 -06:00
pair_gromacs.rst
convert URLs to https where possible, check URLs for bit rot and update or remove
2022-09-24 08:02:18 -04:00
pair_gw.rst
…
pair_harmonic_cut.rst
add some more versionadded tags, now mostly complete for 2022
2022-09-25 09:41:55 -04:00
pair_hbond_dreiding.rst
…
pair_hdnnp.rst
…
pair_hybrid.rst
add /omp aliases to hybrid pair styles for consistency and added tests
2024-06-10 07:33:17 -04:00
pair_ilp_graphene_hbn.rst
add doc file
2023-05-18 22:00:03 +08:00
pair_ilp_tmd.rst
replace non-ASCII character
2023-12-23 11:35:39 -05:00
pair_kim.rst
…
pair_kolmogorov_crespi_full.rst
add doc file
2023-05-18 22:00:03 +08:00
pair_kolmogorov_crespi_z.rst
…
pair_lcbop.rst
…
pair_lebedeva_z.rst
…
pair_lepton.rst
fix typo, cut-n-paste error, and add clarification
2024-01-18 14:32:40 -05:00
pair_line_lj.rst
…
pair_list.rst
correct implementation of quartic potential in pair style list
2022-10-21 02:25:40 -04:00
pair_lj96.rst
…
pair_lj_cubic.rst
…
pair_lj_cut_coul.rst
…
pair_lj_cut_sphere.rst
update version strings for upcoming release
2023-06-14 21:50:27 -04:00
pair_lj_cut_tip4p.rst
rearrange and rewformulate content of the tip4p pair style docs to make it more obvious
2023-11-30 14:53:24 -05:00
pair_lj_expand_sphere.rst
update version strings for upcoming release
2023-06-14 21:50:27 -04:00
pair_lj_expand.rst
add missing index entries
2023-02-02 15:06:22 -05:00
pair_lj_long.rst
…
pair_lj_relres.rst
…
pair_lj_smooth_linear.rst
use r_c consistently
2023-12-01 05:43:42 -05:00
pair_lj_smooth.rst
…
pair_lj_switch3_coulgauss_long.rst
…
pair_lj.rst
show/explain alternate LJ potential using the minimum energy distance
2023-05-01 20:13:37 -04:00
pair_local_density.rst
…
pair_lubricate.rst
…
pair_lubricateU.rst
…
pair_mdf.rst
…
pair_meam_spline.rst
…
pair_meam_sw_spline.rst
…
pair_meam.rst
must update docs for code changes
2024-02-23 21:55:09 -05:00
pair_mesocnt.rst
remove Fortran library based MESONT styles and the library itself
2023-01-20 19:12:42 -05:00
pair_mesodpd.rst
Updated doc pages for the added pair styles, added a cmake preset for gpu-cuda, added "comm_modify vel yes" to in.mdpd
2023-12-05 15:32:57 -06:00
pair_mgpt.rst
…
pair_mie.rst
make more cases specifying cutoff Rc/r_c consistent
2023-12-01 05:49:20 -05:00
pair_mliap.rst
update a couple more pending version strings
2024-04-17 00:41:45 -04:00
pair_modify.rst
add versionadded/versionchanged markers for features from 15Sep2022 and 3Aug2022
2022-09-25 03:20:29 -04:00
pair_momb.rst
…
pair_morse.rst
use r_c consistently
2023-12-01 05:36:25 -05:00
pair_multi_lucy_rx.rst
…
pair_multi_lucy.rst
…
pair_nb3b.rst
consolidate nb3b pair style docs
2023-11-03 22:39:42 -04:00
pair_nm.rst
…
pair_none.rst
revise based on suggestions from languagetool.org
2023-01-22 09:50:27 -05:00
pair_oxdna2.rst
rename CG-DNA potential files
2024-06-20 14:33:26 -04:00
pair_oxdna.rst
rename CG-DNA potential files
2024-06-20 14:33:26 -04:00
pair_oxrna2.rst
rename CG-DNA potential files
2024-06-20 14:33:26 -04:00
pair_pace.rst
update pair_pace.rst documentation page
2023-11-25 23:37:01 +01:00
pair_pedone.rst
update version tags for feature release
2024-04-16 19:47:12 -04:00
pair_peri.rst
reference the Howto from the rest of the manual. Spelling fixes.
2022-09-29 07:43:01 -04:00
pair_pod.rst
various documentation fixups, dedup references, wrap paragraphs, adjust underlines, add missing index
2024-06-26 07:26:03 -04:00
pair_polymorphic.rst
…
pair_python.rst
…
pair_quip.rst
convert URLs to https where possible, check URLs for bit rot and update or remove
2022-09-24 08:02:18 -04:00
pair_rann.rst
…
pair_reaxff.rst
Start with compute reaxff/atom documentation
2023-11-21 14:03:10 -07:00
pair_rebomos.rst
update version tags for feature release
2024-04-16 19:47:12 -04:00
pair_resquared.rst
getting out of the insurance business :-)
2023-01-23 16:45:41 -05:00
pair_rheo_solid.rst
Proofing RHEO package
2024-06-28 17:07:23 -06:00
pair_rheo.rst
Proofing RHEO package
2024-06-28 17:07:23 -06:00
pair_saip_metal.rst
add doc file
2023-05-18 22:00:03 +08:00
pair_sdpd_taitwater_isothermal.rst
…
pair_smatb.rst
…
pair_smd_hertz.rst
…
pair_smd_tlsph.rst
fix a bunch more broken links
2023-02-19 20:48:54 -05:00
pair_smd_triangulated_surface.rst
…
pair_smd_ulsph.rst
fix a bunch more broken links
2023-02-19 20:48:54 -05:00
pair_smtbq.rst
whitespace
2023-04-18 21:49:55 -04:00
pair_snap.rst
documentation updates, clarifications, and corrections
2023-09-14 19:08:15 -04:00
pair_soft.rst
Update docs
2024-06-05 09:00:01 -06:00
pair_sph_heatconduction.rst
Fixed bugs with acquiring depsh from lib/gpu, updated the doc page
2023-12-09 15:39:54 -06:00
pair_sph_idealgas.rst
…
pair_sph_lj.rst
Updated the doc pages for sph/lj/gpu and sph/taitwater/gpu
2023-12-08 14:27:00 -06:00
pair_sph_rhosum.rst
…
pair_sph_taitwater_morris.rst
…
pair_sph_taitwater.rst
Updated the doc pages for sph/lj/gpu and sph/taitwater/gpu
2023-12-08 14:27:00 -06:00
pair_spica.rst
updated pair style and angle style /kk in docs
2024-06-05 19:56:29 -04:00
pair_spin_dipole.rst
…
pair_spin_dmi.rst
…
pair_spin_exchange.rst
…
pair_spin_magelec.rst
…
pair_spin_neel.rst
…
pair_srp.rst
add versionadded/versionchanged markers for features from 15Sep2022 and 3Aug2022
2022-09-25 03:20:29 -04:00
pair_style.rst
keep entries in roughly alphabetical order
2024-07-20 03:35:04 -04:00
pair_sw_angle_table.rst
…
pair_sw.rst
fix broken link and clarify
2022-11-28 15:53:31 -05:00
pair_table_rx.rst
…
pair_table.rst
getting out of the insurance business :-)
2023-01-23 16:45:41 -05:00
pair_tersoff_mod.rst
fix issues due to incomplete conversion form txt2html markup
2023-03-03 17:25:28 -05:00
pair_tersoff_zbl.rst
…
pair_tersoff.rst
…
pair_thole.rst
…
pair_threebody_table.rst
…
pair_tracker.rst
fix typo
2022-12-10 09:59:49 -05:00
pair_tri_lj.rst
…
pair_uf3.rst
update version tags for next feature release
2024-06-25 13:30:38 -04:00
pair_ufm.rst
…
pair_vashishta.rst
…
pair_wf_cut.rst
…
pair_write.rst
…
pair_ylz.rst
fix broken doc links
2023-03-04 17:03:07 -05:00
pair_yukawa_colloid.rst
Add accelerator package text
2023-10-12 12:52:57 -06:00
pair_yukawa.rst
…
pair_zbl.rst
make \AA macro available in :math: for HTML and PDF
2022-10-01 20:58:48 -04:00
pair_zero.rst
getting out of the insurance business :-)
2023-01-23 16:45:41 -05:00
pairs.rst
…
partition.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
plugin.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
prd.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
print.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
processors.rst
spelling
2024-03-17 15:13:13 -04:00
Python_atoms.rst
revise based on suggestions from languagetool.org
2023-01-22 09:50:27 -05:00
Python_call.rst
…
Python_config.rst
use consistent pygments language tags
2022-12-04 16:59:17 -05:00
Python_create.rst
use consistent pygments language tags
2022-12-04 16:59:17 -05:00
Python_error.rst
Clarify exception handling some more.
2023-12-05 16:35:07 -05:00
Python_examples.rst
more revisions based on suggestions from languagetool.org
2023-01-22 16:53:39 -05:00
Python_execute.rst
use consistent pygments language tags
2022-12-04 16:59:17 -05:00
Python_ext.rst
…
Python_formats.rst
…
Python_head.rst
convert URLs to https where possible, check URLs for bit rot and update or remove
2022-09-24 08:02:18 -04:00
Python_install.rst
update documentation for the fact that exceptions in LAMMPS are always used
2023-11-26 13:11:18 -05:00
Python_launch.rst
getting out of the insurance business :-)
2023-01-23 16:45:41 -05:00
Python_module.rst
…
Python_neighbor.rst
Fix whitespace
2022-10-03 12:45:18 -06:00
Python_objects.rst
use consistent pygments language tags
2022-12-04 16:59:17 -05:00
Python_overview.rst
make code-block formatting more consistent and align with documented conventions
2022-12-30 06:46:09 -05:00
Python_properties.rst
add missing documentation
2023-06-10 07:45:52 -06:00
Python_run.rst
…
Python_scatter.rst
add example with more compact initialization for scatter
2024-04-12 23:46:35 -04:00
Python_trouble.rst
…
python.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
quit.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
read_data.rst
Merge pull request #4214 from jtclemm/rheo
2024-07-18 18:38:51 -04:00
read_dump.rst
use correct spelling for semicolon
2023-05-08 05:54:33 -04:00
read_restart.rst
update documentation for removal of MPIIO package
2023-08-20 22:17:03 -04:00
region.rst
Update region.rst
2023-10-20 13:41:00 +03:00
replicate.rst
spelling fixes
2024-05-13 13:43:50 -04:00
rerun.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
reset_atoms.rst
reset_atoms: one more grammar tweak
2024-07-06 18:03:43 -04:00
reset_timestep.rst
…
restart.rst
update documentation for removal of MPIIO package
2023-08-20 22:17:03 -04:00
Run_basics.rst
make code-block formatting more consistent and align with documented conventions
2022-12-30 06:46:09 -05:00
Run_head.rst
…
Run_options.rst
getting out of the insurance business :-)
2023-01-23 16:45:41 -05:00
Run_output.rst
fix typo and be more precise in describing what "Loop" time means
2023-12-11 09:48:07 -05:00
run_style.rst
small docs and spelling corrections and updates
2024-06-19 15:04:14 -04:00
Run_windows.rst
more revisions based on suggestions from languagetool.org
2023-01-22 16:53:39 -05:00
run.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
set.rst
fixing merge conflicts
2024-01-12 11:12:02 -07:00
shell.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
special_bonds.rst
explain how to keep pairs in the neighbor list even if the scaling factor should be 0.0
2023-05-09 08:24:02 -04:00
Speed_bench.rst
…
Speed_compare.rst
…
Speed_gpu.rst
revise based on suggestions from languagetool.org
2023-01-22 09:50:27 -05:00
Speed_intel.rst
convert URLs to https where possible, check URLs for bit rot and update or remove
2022-09-24 08:02:18 -04:00
Speed_kokkos.rst
improve some explanations for KOKKOS package usage.
2024-02-20 11:38:32 -05:00
Speed_measure.rst
…
Speed_omp.rst
some more languagtool.org suggested updates
2023-01-23 05:15:34 -05:00
Speed_opt.rst
…
Speed_packages.rst
make capitalization consistent
2022-09-30 19:53:11 -04:00
Speed_tips.rst
…
Speed.rst
revise based on suggestions from languagetool.org
2023-01-22 09:50:27 -05:00
suffix.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
tad.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
temper_grem.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
temper_npt.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
temper.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
thermo_modify.rst
more tweaks
2024-04-08 16:25:17 -06:00
thermo_style.rst
small doc formatting and spelling fixes
2024-04-16 19:33:14 -04:00
thermo.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
third_order.rst
small doc style update
2023-07-15 12:36:41 -04:00
timer.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
timestep.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
Tools.rst
Merge remote-tracking branch 'github/develop' into collected-small-fixes
2024-07-23 17:04:36 -04:00
uncompute.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
undump.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
unfix.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
units.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
variable.rst
new special variable function is_timeout()
2024-06-29 04:02:33 -04:00
velocity.rst
Replaced parsed-literal:: with code-block:: LAMMPS under "Syntax"
2023-07-11 17:57:22 -05:00
write_coeff.rst
…
write_data.rst
keyword was changed at some point
2024-05-16 14:38:04 -04:00
write_dump.rst
…
write_restart.rst
more doc page updates for general tri
2023-11-16 16:35:16 -07:00