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Ryan S. Elliott cf67c16fcb Add openkim-models install instructions
2020-02-11 22:33:56 -06:00
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_ext
update sphinx extension to automatically pad lists to fill tables and avoid errors processing the documentation
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Developer
move developer's guide tex sources back to src/Developer
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Eqs
minor fixes
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JPG
update dynamical_matrix docs
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PDF
Update Colvars library to version 2020-01-27
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USER/atc
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.gitignore
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angle_charmm.rst
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angle_class2.rst
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angle_coeff.rst
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angle_cosine_buck6d.rst
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angle_cosine_delta.rst
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angle_cosine_periodic.rst
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angle_cosine_shift_exp.rst
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angle_cosine_shift.rst
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angle_cosine_squared.rst
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angle_cosine.rst
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angle_cross.rst
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angle_dipole.rst
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angle_fourier_simple.rst
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angle_fourier.rst
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angle_harmonic.rst
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angle_hybrid.rst
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angle_mm3.rst
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angle_none.rst
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angle_quartic.rst
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angle_sdk.rst
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angle_style.rst
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angle_table.rst
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angle_zero.rst
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angles.rst
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atom_modify.rst
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atom_style.rst
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balance.rst
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bond_class2.rst
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bond_coeff.rst
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bond_fene_expand.rst
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bond_fene.rst
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bond_gromos.rst
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bond_harmonic_shift_cut.rst
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bond_harmonic_shift.rst
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bond_harmonic.rst
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bond_hybrid.rst
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bond_mm3.rst
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bond_morse.rst
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bond_nonlinear.rst
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bond_oxdna.rst
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bond_quartic.rst
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bond_style.rst
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bond_table.rst
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bond_write.rst
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bond_zero.rst
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bonds.rst
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boundary.rst
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box.rst
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Build_settings.rst
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clear.rst
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Commands_fix.rst
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commands_list.rst
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Commands.rst
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compute_ackland_atom.rst
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compute_adf.rst
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compute_angle.rst
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compute_angmom_chunk.rst
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compute_basal_atom.rst
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compute_coord_atom.rst
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compute_damage_atom.rst
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compute_dihedral_local.rst
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compute_dihedral.rst
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compute_dilatation_atom.rst
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compute_spin.rst
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compute.rst
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computes.rst
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create_atoms.rst
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dielectric.rst
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dihedral_charmm.rst
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dihedral_class2.rst
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dihedral_nharmonic.rst
Convert documentation of dihedral styles from images to mathjax
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dihedral_none.rst
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dihedral_opls.rst
Convert documentation of improper styles from images to mathjax
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dihedral_quadratic.rst
Convert documentation of dihedral styles from images to mathjax
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dihedral_spherical.rst
Convert documentation of improper styles from images to mathjax
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dihedral_style.rst
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dihedral_table_cut.rst
Convert documentation of improper styles from images to mathjax
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dihedral_table.rst
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dihedral_zero.rst
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dihedrals.rst
merged in current master
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dimension.rst
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displace_atoms.rst
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dump_adios.rst
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dump_cfg_uef.rst
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dump_h5md.rst
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dump_image.rst
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dump_modify.rst
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dump_molfile.rst
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dump_netcdf.rst
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dump_vtk.rst
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dump.rst
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dynamical_matrix.rst
minor fixes
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echo.rst
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Errors_bugs.rst
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Errors_common.rst
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Errors_messages.rst
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Errors.rst
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Examples.rst
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fix_adapt_fep.rst
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fix_adapt.rst
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fix_atom_swap.rst
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fix_eos_table_rx.rst
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fix_ipi.rst
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fix_langevin_drude.rst
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fix_langevin_eff.rst
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fix_latte.rst
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fix_lb_viscous.rst
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fix_meso.rst
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fix_modify.rst
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fix_mvv_dpd.rst
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fix_precession_spin.rst
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fix_press_berendsen.rst
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fix_print.rst
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fix.rst
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fixes.rst
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group2ndx.rst
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group.rst
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Howto_client_server.rst
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pair_zero.rst
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pairs.rst
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partition.rst
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prd.rst
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print.rst
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processors.rst
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Python_call.rst
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Python_examples.rst
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Python_head.rst
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Python_test.rst
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python.rst
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quit.rst
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read_data.rst
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read_dump.rst
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read_restart.rst
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region.rst
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replicate.rst
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rerun.rst
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reset_ids.rst
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restart.rst
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Run_basics.rst
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run_style.rst
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run.rst
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server_mc.rst
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server_md.rst
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server_md.txt
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server.rst
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set.rst
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shell.rst
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special_bonds.rst
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Speed_bench.rst
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Speed_compare.rst
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Speed_gpu.rst
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Speed_intel.rst
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Speed_kokkos.rst
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Speed_measure.rst
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Speed_omp.rst
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Speed_opt.rst
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Speed_packages.rst
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Speed_tips.rst
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Speed.rst
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suffix.rst
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tad.rst
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temper_grem.rst
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temper_npt.rst
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temper.rst
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thermo_modify.rst
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thermo_style.rst
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thermo.rst
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third_order.rst
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timer.rst
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timestep.rst
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Tools.rst
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uncompute.rst
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undump.rst
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unfix.rst
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units.rst
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variable.rst
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velocity.rst
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write_coeff.rst
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write_data.rst
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write_dump.rst
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write_restart.rst
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