use a more compact image
This commit is contained in:
@ -9,7 +9,6 @@ computational cost of enlarging the system is linear with the system
|
||||
size). Additional parallelization using GPUs or OpenMP can then be
|
||||
applied within the sub-domain assigned to an MPI process.
|
||||
|
||||
|
||||
Partitioning
|
||||
^^^^^^^^^^^^
|
||||
|
||||
@ -23,12 +22,12 @@ and can be either "brick" (a regular grid) or "tiled".
|
||||
LAMMPS domain decomposition
|
||||
|
||||
This figure shows the different kinds of domain decomposition used
|
||||
for MPI parallelization: "brick" on the left with an orthogonal (top)
|
||||
and a triclinic (bottom) simulation domain, and "tiled" on the right.
|
||||
The black lines show the division into sub-domains and the contained
|
||||
atoms are "owned" by the corresponding MPI process. The green dashed
|
||||
lines indicate how sub-domains are extended with "ghost" atoms up
|
||||
to the communication cutoff distance.
|
||||
for MPI parallelization: "brick" on the left with an orthogonal
|
||||
(left) and a triclinic (middle) simulation domain, and a "tiled"
|
||||
decomposition (right). The black lines show the division into
|
||||
sub-domains and the contained atoms are "owned" by the corresponding
|
||||
MPI process. The green dashed lines indicate how sub-domains are
|
||||
extended with "ghost" atoms up to the communication cutoff distance.
|
||||
|
||||
The LAMMPS simulation box is a 3d or 2d volume, which can be orthogonal
|
||||
or triclinic in shape, as illustrated in the :ref:`domain-decomposition`
|
||||
@ -70,7 +69,7 @@ the load imbalance:
|
||||
communication style can produce a partitioning with equal numbers of
|
||||
particles in each sub-domain.
|
||||
|
||||
|
||||
|
||||
.. |decomp1| image:: img/decomp-regular.png
|
||||
:width: 24%
|
||||
|
||||
@ -103,4 +102,3 @@ Neighbor lists
|
||||
|
||||
Long-range interactions
|
||||
^^^^^^^^^^^^^^^^^^^^^^^
|
||||
|
||||
|
||||
Binary file not shown.
|
Before Width: | Height: | Size: 1.2 MiB After Width: | Height: | Size: 547 KiB |
Reference in New Issue
Block a user