tx258/lammps-gran-kokkos
1
0
Fork 0
Code Issues Pull Requests Actions Packages Projects Releases Wiki Activity

update VMD compatibility info, too.

Browse Source
This commit is contained in:
Axel Kohlmeyer
2022-12-22 12:25:49 -05:00
parent 0b7a55dac6
commit 90cf1d6fca
1 changed files with 9 additions and 5 deletions
Download Patch File Download Diff File Expand all files Collapse all files

14
doc/src/dump.rst
View File

@ -250,16 +250,20 @@ the :doc:`dump_modify <dump_modify>` page for details.
The *style* keyword determines what kind of data is written to the
dump file(s) and in what format.
Note that *atom*, *custom*, *dcd*, *xtc*, and *xyz* style dump files
can be read directly by `VMD <https://www.ks.uiuc.edu/Research/vmd>`_,
a popular tool for viewing molecular system.
Note that *atom*, *custom*, *dcd*, *xtc*, *xyz*, and *yaml* style dump
files can be read directly by `VMD <https://www.ks.uiuc.edu/Research/vmd>`_,
a popular tool for visualizing and analyzing trajectories from atomic
and molecular systems. For reading *netcdf* style dump files, the
netcdf plugin needs to be recompiled from source using a NetCDF version
compatible with the one used by LAMMPS. The bundled plugin binary
uses are very old version that is not compatible.
Likewise the `OVITO visualization package <https://www.ovito.org>`_,
popular for materials modeling, can read the *atom*, *custom*,
*local*, *xtc*, *cfg*, *netcdf*, and *xyz* style atom dump files
directly. WIth version 3.8 and above, OVITO can also read and
directly. With version 3.8 and above, OVITO can also read and
visualize *grid* style dump files with grid cell data, including
isosurface images of the grid cell values.
iso-surface images of the grid cell values.
Note that settings made via the :doc:`dump_modify <dump_modify>`
command can also alter the format of individual values and content of