Added quartic function for explicit pair interaction in pair_style list.

This commit is contained in:
Terry Suun
2022-10-04 10:40:32 +08:00
parent 2970a2140f
commit ed8e317ef6
3 changed files with 56 additions and 7 deletions

View File

@ -69,6 +69,7 @@ Here is an example file:
15 259 lj126 1.0 1.0 50.0
15 603 morse 10.0 1.2 2.0 10.0 # and another comment
18 470 harmonic 50.0 1.2 5.0
19 332 quartic 5.0 -1.2 1.2 5.0
The style *lj126* computes pairwise interactions with the formula
@ -106,6 +107,21 @@ and the coefficients:
Note that the usual 1/2 factor is included in :math:`K`.
The style *quartic* computes pairwise interactions with the formula
.. math::
E = K (r - r_c)^2 (r - r_c -b_1) (r - r_c - b_2) \qquad r < r_c
and the coefficients:
* :math:`K` (energy units)
* :math:`b_1` (distance units)
* :math:`b_2` (distance units)
* :math:`r_c` (distance units)
Note that the cutoff :math:`r_c` should always be specified to ensure zero energy and smooth force at cutoff.
----------
Mixing, shift, table, tail correction, restart, rRESPA info

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@ -32,13 +32,14 @@
using namespace LAMMPS_NS;
enum { NONE = 0, HARM, MORSE, LJ126 };
enum { NONE = 0, HARM, MORSE, LJ126, QUARTIC };
static std::map<std::string, int> stylename = {
{ "none", NONE },
{ "harmonic", HARM },
{ "morse", MORSE },
{ "lj126", LJ126 }
{ "lj126", LJ126 },
{ "quartic", QUARTIC }
};
// fast power function for integer exponent > 0
@ -157,8 +158,21 @@ void PairList::compute(int eflag, int vflag)
if (eflag_either)
epair = 4.0*par.param.lj126.epsilon*r6inv
* (sig6*sig6*r6inv - sig6) - par.offset;
} else if (par.style == QUARTIC) {
const double r = sqrt(rsq);
double dr = r - sqrt(par.cutsq);
double ra = dr - par.param.quartic.b1;
double rb = dr - par.param.quartic.b2;
double r2 = dr * dr;
fpair = -par.param.quartic.k / r * (r2 * (ra + rb) + 2.0 * dr * ra * rb);
if (eflag_either)
epair = par.param.quartic.k * r2 * ra * rb;
}
if (newton_pair || i < nlocal) {
f[i].x += dx*fpair;
f[i].y += dy*fpair;
@ -221,10 +235,10 @@ void PairList::settings(int narg, char **arg)
// read and parse potential file only on MPI rank 0.
if (comm->me == 0) {
int nharm, nmorse, nlj126, nskipped;
int nharm, nmorse, nlj126, nquartic, nskipped;
FILE *fp = utils::open_potential(arg[0],lmp,nullptr);
TextFileReader reader(fp,"pair list coeffs");
npairs = nharm = nmorse = nlj126 = nskipped = 0;
npairs = nharm = nmorse = nlj126 = nquartic = nskipped = 0;
try {
char *line;
@ -258,6 +272,14 @@ void PairList::settings(int narg, char **arg)
++nlj126;
break;
case QUARTIC:
oneparam.param.quartic.k = values.next_double();
oneparam.param.quartic.b1 = values.next_double();
oneparam.param.quartic.b2 = values.next_double();
oneparam.param.quartic.rc = values.next_double();
++nquartic;
break;
case NONE: // fallthrough
error->warning(FLERR,"Skipping unrecognized pair list potential entry: {}",
utils::trim(line));
@ -265,7 +287,7 @@ void PairList::settings(int narg, char **arg)
break;
}
if (values.has_next())
oneparam.cutsq = values.next_double();
oneparam.cutsq = mypow(values.next_double(), 2);
else
oneparam.cutsq = cut_global*cut_global;
@ -274,8 +296,8 @@ void PairList::settings(int narg, char **arg)
} catch (std::exception &e) {
error->one(FLERR,"Error reading pair list coeffs file: {}", e.what());
}
utils::logmesg(lmp, "Read {} ({}/{}/{}) interacting pair lines from {}. "
"{} skipped entries.\n", npairs, nharm, nmorse, nlj126, arg[0], nskipped);
utils::logmesg(lmp, "Read {} ({}/{}/{}/{}) interacting pair lines from {}. "
"{} skipped entries.\n", npairs, nharm, nmorse, nlj126, nquartic, arg[0], nskipped);
memory->create(params,npairs,"pair_list:params");
memcpy(params, myparams.data(),npairs*sizeof(list_param));
@ -339,6 +361,12 @@ void PairList::init_style()
const double r6inv = par.cutsq*par.cutsq*par.cutsq;
const double sig6 = mypow(par.param.lj126.sigma,6);
par.offset = 4.0*par.param.lj126.epsilon*r6inv * (sig6*sig6*r6inv - sig6);
} else if (par.style == QUARTIC) {
// the offset is always 0 at rc
par.offset = 0.0;
// correct cutsq
par.cutsq = mypow(par.param.quartic.rc, 2);
}
}
}

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@ -49,11 +49,16 @@ class PairList : public Pair {
struct lj126_p {
double epsilon, sigma;
};
struct quartic_p {
double k, b1, b2, rc;
};
union param_u {
harm_p harm;
morse_p morse;
lj126_p lj126;
quartic_p quartic;
};
struct list_param {