Commit Graph

42559 Commits

Author SHA1 Message Date
4e582993c4 use simpler std::string concatenation instead of implicit fmt::format() processing 2025-01-31 16:07:39 -05:00
8c2bbc1608 add error URLs for molecule files 2025-01-31 15:57:53 -05:00
1d56981bb1 reassign error URL numbers to match list in pull request 2025-01-31 15:15:10 -05:00
ac21f24013 update fix ave/correlate for new error message features 2025-01-31 07:32:05 -05:00
2ea86efe67 simplify custom format processing 2025-01-31 07:22:22 -05:00
4cfa2e4ed9 update fix ave/atom and fix ave/chunk to have errors with position indicator 2025-01-31 04:33:24 -05:00
2c7bd41b7b make error commands more explicit 2025-01-31 04:32:38 -05:00
3f952f53ce avoid segfault without expanded arguments 2025-01-31 04:04:52 -05:00
0c28dfad44 simplify 2025-01-31 04:04:13 -05:00
42e379a8de Merge remote-tracking branch 'github/develop' into add-error-explanations 2025-01-31 03:23:51 -05:00
ea1607f1d8 Merge pull request #4445 from stanmoore1/small_fixes
Collected small changes and fixes
2025-01-31 00:42:12 -05:00
6d997258e7 Merge branch 'small_fixes' of github.com:stanmoore1/lammps into small_fixes 2025-01-30 15:25:13 -08:00
9bb56d10b3 Move typedef unused for GPUs inside directive to prevent compiler warning 2025-01-30 15:25:05 -08:00
2099dabb49 Remove unused code 2025-01-30 15:16:30 -08:00
aa9b2b415f remove sometimes misleading and often confusing warning 2025-01-30 16:20:29 -05:00
b98797ec2c Merge remote-tracking branch 'github/develop' into small_fixes 2025-01-30 16:19:38 -05:00
c2dd04b991 replace non-ASCII chars with ASCII equivalents 2025-01-30 16:05:08 -05:00
1d286f194e Fix bug in compute_stress_cartesian with periodic boundary conditions 2025-01-30 12:46:34 -08:00
48893236ec Merge pull request #4380 from rbberger/python_computes
Python and library API changes for computes
2025-01-30 14:21:25 -05:00
75b33ac436 Merge pull request #4443 from jrgissing/reaxff/species-issues
Reaxff/species issues
2025-01-30 14:20:01 -05:00
60c4cc08e9 Merge pull request #4448 from Becksteinlab/imdv3-fix
Fix broken IMDv3 `unwrap` option logic
2025-01-30 12:53:39 -05:00
4e3a41dc25 Merge pull request #4446 from jtclemm/small-patches
Miscellaneous small patches
2025-01-30 12:51:50 -05:00
c9241aa2be Merge pull request #4447 from akohlmey/recover-failed-tests
Updates to recover failed post-merge tests
2025-01-30 12:16:06 -05:00
363309a7d8 add tip for addressing memory management issues with ReaxFF 2025-01-30 03:57:30 -05:00
444c6d78f7 consistently use a :class: qualifier for admonitions 2025-01-30 03:54:26 -05:00
2b0a6419b7 add missing doc section for fix python/invoke 2025-01-29 23:57:44 -07:00
31720b2741 add missing init function to fix python/invoke 2025-01-29 23:53:23 -07:00
48f749fbdd exact copy of v2 unwrap logic 2025-01-29 23:16:44 -07:00
6685524fdb correctly apply environment variables 2025-01-29 23:39:30 -05:00
da1bbec0be set lmp pointer to NULL after delete to avoid using it or deleting it a second time 2025-01-29 23:32:52 -05:00
06bdb7b637 refactor catching exceptions during LAMMPS initialization
this will avoid the nasty segfaults with "cannot have multiple stdout capturers"
instead it will catch and display any exception thrown during init.
2025-01-29 23:09:48 -05:00
29891e06c0 correct dependency for efield/lepton tests 2025-01-29 20:52:34 -05:00
81e10bdd53 unused variable 2025-01-29 20:20:19 -05:00
4df3dead69 silence warning 2025-01-29 20:16:34 -05:00
3b5dfb0a05 properly unwrap positions 2025-01-29 20:16:26 -05:00
67e28c2bfd update for LAMMPS programming style 2025-01-29 20:15:59 -05:00
c4106f9d09 Merge remote-tracking branch 'github/develop' into recover-failed-tests 2025-01-29 19:39:58 -05:00
74dca2daad Merge pull request #4310 from EiPiFun/develop-eipifun-with-doc
Add angleoffset for hbond/dreiding/morse and hbond/dreiding/lj
2025-01-29 17:12:36 -05:00
f5a8019654 spelling fixes and updates for the manual 2025-01-29 16:39:53 -05:00
b4eee0c27a Marking scalar intensive in elec/stop/fit fix 2025-01-29 13:58:47 -07:00
d638f66b68 updating to match new 1d syntax 2025-01-29 13:29:15 -07:00
ff340cf409 Repairing srp wildcard logic 2025-01-29 13:09:49 -07:00
6c8d531f78 remove unused variables and related dead code 2025-01-29 05:51:24 -05:00
3f38635ecc restore "= 0.0" deleted by accident 2025-01-28 22:08:46 -05:00
229916e11f whitespace 2025-01-28 21:35:11 -05:00
201d1a59b5 the /angleoffset versions have their own different parameter file and reader 2025-01-28 21:33:44 -05:00
759a37cc75 update and synchronize with implementation of the non-OPENMP version 2025-01-28 21:33:03 -05:00
8b85ee22a3 use consistent formatting across all hbond/dreiding styles 2025-01-28 21:32:13 -05:00
f928df87a1 Merge branch 'develop' into develop-eipifun-with-doc 2025-01-28 19:42:13 -05:00
0a7e0dc388 Remove another unused variable 2025-01-28 17:23:39 -07:00