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update chemistry tutorials [ci skip]
adjust setup to changes made in the fix chem/shrink/core implementation in LIGGGHTS (cf. commit abe32ee)
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@ -81,22 +81,14 @@ fix k0_H2 ore property/atom k0_cfd6 vector yes no no 30 23 160
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fix Ea_H2 ore property/atom Ea_cfd6 vector yes no no 63627 85000 105908
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# particle parameters
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fix porosity ore property/atom porosity_ vector yes no no 0.61 0.34 0.19 0.17
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fix tortuosity ore property/global tortuosity_ scalar 3
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fix pore_diameter ore property/global pore_diameter_ scalar 1.e-7
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fix porosity ore property/global porosity_ore vector 0.61 0.34 0.19 0.17
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fix tortuosity ore property/global tortuosity_ore scalar 3
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fix pore_diameter ore property/global pore_diameter_ore scalar 1.e-7
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fix layerDensities ore property/global density_ore vector 7870. 5740. 5170. 5240.
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# define layer properties
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fix LayerRelRadii ore property/atom relRadii vector yes no no 1.0 0.998 0.995 0.98
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### define fix for mass layer - initial testing
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fix LayerMasses ore property/atom massLayer vector yes no no 0. 0. 0. 0.
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fix LayerDensities ore property/global density_ore vector 7870. 5740. 5170. 5240.
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## define fix for rho_eff and fracRed - initialize as zero
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fix fracRed ore property/atom fracRed_ore vector yes no no 0. 0. 0.
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fix rhoeff ore property/atom rhoeff vector yes no no 0. 0. 0. 0.
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###############
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# Write data into files for post-processing
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group part type 1
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@ -69,21 +69,14 @@ fix k0_H2 all property/atom k0_cfd6 vector yes no no 30 23 160
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fix Ea_H2 all property/atom Ea_cfd6 vector yes no no 63627 71162 92092
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# particle porosity/tortuosity/pore diameter
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fix porosity all property/atom porosity_ vector yes no no 0.65 0.31 0.16 0.15
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fix tortuosity all property/global tortuosity_ scalar 3
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fix pore_diameter all property/global pore_diameter_ scalar 7e-7
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fix porosity all property/global porosity_all vector 0.65 0.31 0.16 0.15
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fix tortuosity all property/global tortuosity_all scalar 3
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fix pore_diameter all property/global pore_diameter_all scalar 7e-7
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fix layerDensities all property/global density_all vector 7870. 5740. 5170. 5240.
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# define layer properties
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fix LayerRelRadii all property/atom relRadii vector yes no no 1.0 0.998 0.995 0.98
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# define fix for mass layer - initial testing
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fix LayerMasses all property/atom massLayer vector yes no no 0. 0. 0. 0.
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fix LayerDensities all property/global density_all vector 7870. 5740. 5170. 5240.
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# define fix for rho_eff and fracRed - initialize as zero
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fix fracRed all property/atom fracRed_all vector yes no no 0. 0. 0.
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fix rhoeff all property/atom rhoeff vector yes no no 0. 0. 0. 0.
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###############
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# Write data into files for post-processing
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@ -69,21 +69,14 @@ fix k0_H2 all property/atom k0_cfd6 vector yes no no 30 23 160
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fix Ea_H2 all property/atom Ea_cfd6 vector yes no no 63627 71162 92092
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# particle porosity/tortuosity/pore diameter
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fix porosity all property/atom porosity_ vector yes no no 0.65 0.31 0.16 0.15
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fix tortuosity all property/global tortuosity_ scalar 3
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fix pore_diameter all property/global pore_diameter_ scalar 7e-7
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fix porosity all property/global porosity_all vector 0.65 0.31 0.16 0.15
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fix tortuosity all property/global tortuosity_all scalar 3
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fix pore_diameter all property/global pore_diameter_all scalar 7e-7
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fix layerDensities all property/global density_all vector 7870. 5740. 5170. 5240.
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# define layer properties
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fix LayerRelRadii all property/atom relRadii vector yes no no 1.0 0.998 0.995 0.98
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### define fix for mass layer - initial testing
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fix LayerMasses all property/atom massLayer vector yes no no 0. 0. 0. 0.
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fix LayerDensities all property/global density_all vector 7870. 5740. 5170. 5240.
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## define fix for rho_eff and fracRed - initialize as zero
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fix fracRed all property/atom fracRed_all vector yes no no 0. 0. 0.
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fix rhoeff all property/atom rhoeff vector yes no no 0. 0. 0. 0.
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###############
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# Write data into files for post-processing
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@ -65,21 +65,14 @@ fix k0_CO all property/atom k0_cfd5 vector yes no no 17 25 2700
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fix Ea_CO all property/atom Ea_cfd5 vector yes no no 69488 73674 113859
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# particle porosity/tortuosity/pore diameter
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fix porosity all property/atom porosity_ vector yes no no 0.65 0.31 0.16 0.15
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fix tortuosity all property/global tortuosity_ scalar 3
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fix pore_diameter all property/global pore_diameter_ scalar 5.5e-7
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fix porosity all property/global porosity_all vector 0.65 0.31 0.16 0.15
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fix tortuosity all property/global tortuosity_all scalar 3
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fix pore_diameter all property/global pore_diameter_all scalar 5.5e-7
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fix layerDensities all property/global density_all vector 7870. 5740. 5170. 5240.
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# define layer properties
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fix LayerRelRadii all property/atom relRadii vector yes no no 1.0 0.998 0.995 0.98
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### define fix for mass layer - initial testing
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fix LayerMasses all property/atom massLayer vector yes no no 0. 0. 0. 0.
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fix LayerDensities all property/global density_all vector 7870. 5740. 5170. 5240.
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## define fix for rho_eff and fracRed - initialize as zero
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fix fracRed all property/atom fracRed_all vector yes no no 0. 0. 0.
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fix rhoeff all property/atom rhoeff vector yes no no 0. 0. 0. 0.
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###############
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# Write data into files for post-processing
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@ -65,21 +65,14 @@ fix k0_CO all property/atom k0_cfd5 vector yes no no 17 25 2700
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fix Ea_CO all property/atom Ea_cfd5 vector yes no no 69488 73674 113859
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# particle porosity/tortuosity/pore diameter
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fix porosity all property/atom porosity_ vector yes no no 0.65 0.31 0.16 0.15
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fix tortuosity all property/global tortuosity_ scalar 3
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fix pore_diameter all property/global pore_diameter_ scalar 5.5e-7
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fix porosity all property/global porosity_all vector 0.65 0.31 0.16 0.15
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fix tortuosity all property/global tortuosity_all scalar 3
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fix pore_diameter all property/global pore_diameter_all scalar 5.5e-7
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fix layerDensities all property/global density_all vector 7870. 5740. 5170. 5240.
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# define layer properties
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fix LayerRelRadii all property/atom relRadii vector yes no no 1.0 0.998 0.995 0.98
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### define fix for mass layer - initial testing
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fix LayerMasses all property/atom massLayer vector yes no no 0. 0. 0. 0.
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fix LayerDensities all property/global density_all vector 7870. 5740. 5170. 5240.
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## define fix for rho_eff and fracRed - initialize as zero
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fix fracRed all property/atom fracRed_all vector yes no no 0. 0. 0.
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fix rhoeff all property/atom rhoeff vector yes no no 0. 0. 0. 0.
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###############
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# Write data into files for post-processing
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