tutorials: Fixes to TDAC cases

Properties have been removed that are set in the standard TDAC ".cfg"
file, and ".orig" files have been used to better ensure that cleanCase
restores the original state. Sandia has also had it's TDAC parameters
slightly tweaked for stability.

tutorials/combustion/chemFoam/ic8h18_TDAC/constant/chemistryProperties

@@ -36,8 +36,6 @@ odeCoeffs
 
 reduction
 {
-    tolerance   1e-4;
-
     // Search initiating set (SIS) of species, needed for most methods
     initialSet
     (

tutorials/combustion/reactingFoam/RAS/DLR_A_LTS/Allclean

@@ -1,11 +0,0 @@
-#!/bin/sh
-cd ${0%/*} || exit 1    # Run from this directory
-
-# Source tutorial clean functions
-. $WM_PROJECT_DIR/bin/tools/CleanFunctions
-
-cleanCase
-
-rm -f 0/T
-
-#------------------------------------------------------------------------------

tutorials/combustion/reactingFoam/RAS/DLR_A_LTS/constant/chemistryProperties

@@ -15,121 +15,32 @@ FoamFile
 }
 // * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
 
+#includeEtc "caseDicts/solvers/chemistry/TDAC/chemistryPropertiesFlame.cfg"
+
 chemistryType
 {
     solver            ode;
     method            TDAC;
 }
 
-chemistry           on;
+chemistry       on;
 
-initialChemicalTimeStep 1e-07;
+initialChemicalTimeStep 1e-7;
 
 odeCoeffs
 {
     solver          seulex;
-    absTol          1e-08;
-    relTol          0.1;
-}
-
-reduction
-{
-    // Activate reduction
-    active  on;
-
-    // Switch logging of the reduction statistics and performance
-    log         on;
-
-    // Tolerance depends on the reduction method, see details for each method
-    tolerance   1e-4;
-
-    // Available methods: DRG, DAC, DRGEP, PFA, EFA
-    method DAC;
-
-    // Search initiating set (SIS) of species, needed for most methods
-    initialSet
-    (
-        CO
-        CH4
-        HO2
-    );
-
-    // For DAC, option to automatically change the SIS switch from HO2 to H2O
-    // and CO to CO2, + disable fuel
-    automaticSIS    off;
-
-    // When automaticSIS, the method needs to know the fuel
-    fuelSpecies
-    (
-        (CH4 1)
-    );
+    absTol          1e-8;
+    relTol          1e-1;
 }
 
 tabulation
 {
-    // Activate tabulation
-    active      on;
-
-    // Switch logging of the tabulation statistics and performance
-    log         on;
-
-    printProportion    off;
-
-    printNumRetrieve   off;
-
-    // Tolerance used for retrieve and grow
-    tolerance   0.003;
-
-    // ISAT is the only method currently available
-    method    ISAT;
-
     // Scale factors used in the definition of the ellipsoid of accuracy
     scaleFactor
     {
-        otherSpecies 1;
         Temperature  1000;
-        Pressure     1e15;
-        deltaT       1;
     }
-
-    // Maximum number of leafs stored in the binary tree
-    maxNLeafs  5000;
-
-    // Maximum life time of the leafs (in time steps) used in unsteady
-    // simulations to force renewal of the stored chemPoints and keep the tree
-    // small
-    chPMaxLifeTime 1000;
-
-    // Maximum number of growth allowed on a chemPoint to avoid distorted
-    // chemPoints
-    maxGrowth  100;
-
-    // Number of time steps between analysis of the tree to remove old
-    // chemPoints or try to balance it
-    checkEntireTreeInterval  500;
-
-    // Parameters used to decide whether to balance or not if the tree's depth
-    // is larger than maxDepthFactor*log2(nLeafs) then balance the tree
-    maxDepthFactor   2;
-
-    // Try to balance the tree only if the size of the tree is greater
-    minBalanceThreshold 30;
-
-    // Activate the use of a MRU (most recently used) list
-    MRURetrieve false;
-
-    // Maximum size of the MRU list
-    maxMRUSize 0;
-
-    // Allow to grow points
-    growPoints  true;
-
-    // When mechanism reduction is used, new dimensions might be added
-    // maxNumNewDim set the maximum number of new dimensions added during a
-    // growth
-    maxNumNewDim 10;
-
-    variableTimeStep true;
 }
 
 #include "reactionsGRI"

tutorials/combustion/reactingFoam/RAS/SandiaD_LTS/Allrun

@@ -20,7 +20,6 @@ then
     runApplication -a foamDictionary -entry "startTime" -set "0" system/controlDict
     runApplication -a foamDictionary -entry "writeInterval" -set "1500" system/controlDict
     runApplication -a foamDictionary -entry "endTime" -set "1500" system/controlDict
-    rm -rf constant/chemistryProperties > /dev/null 2>&1
     runApplication -a foamDictionary -entry "chemistry" -set "off" constant/chemistryProperties
 
     runApplication $application
@@ -29,12 +28,9 @@ then
     runApplication -a foamDictionary -entry "startTime" -set "1500" system/controlDict
     runApplication -a foamDictionary -entry "writeInterval" -set "100" system/controlDict
     runApplication -a foamDictionary -entry "endTime" -set "5000" system/controlDict
-    rm -rf constant/chemistryProperties > /dev/null 2>&1
     runApplication -a foamDictionary -entry "chemistry" -set "on" constant/chemistryProperties
 fi
 
 runApplication -o $application
 
-rm -rf constant/chemistryProperties > /dev/null 2>&1
-
 #------------------------------------------------------------------------------

tutorials/combustion/reactingFoam/RAS/SandiaD_LTS/constant/chemistryProperties.orig

@@ -26,7 +26,6 @@ chemistryType
 chemistry       on;
 
 initialChemicalTimeStep 1e-7;
-//maxChemicalTimeStep 1e-3;
 
 odeCoeffs
 {
@@ -35,14 +34,13 @@ odeCoeffs
     relTol          1e-1;
 }
 
-reduction
-{
-    tolerance   1e-4;
-}
-
 tabulation
 {
-    tolerance   3e-3;
+    // Scale factors used in the definition of the ellipsoid of accuracy
+    scaleFactor
+    {
+        Temperature  1000;
+    }
 }
 
 #include "reactionsGRI"