In chemistryModel "li" is set to the current cell index but for other reacting systems it should be set to the current index of the element for which the reaction system is being evaluated. In the ODESolver "li" is the current index of the element for which the ODE system is being solved if there is a list of related systems being solved, otherwise it can be set to 0.
README for OpenFOAM-dev
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About OpenFOAM
OpenFOAM is a free, open source computational fluid dynamics (CFD) software package released by the OpenFOAM Foundation. It has a large user base across most areas of engineering and science, from both commercial and academic organisations. OpenFOAM has an extensive range of features to solve anything from complex fluid flows involving chemical reactions, turbulence and heat transfer, to solid dynamics and electromagnetics.
Copyright
OpenFOAM is free software: you can redistribute it and/or modify it under the
terms of the GNU General Public License as published by the Free Software
Foundation, either version 3 of the License, or (at your option) any later
version. See the file COPYING in this directory or
http://www.gnu.org/licenses/, for a description of the GNU General Public
License terms under which you can copy the files.