Merge branch 'develop' into 'master'

Final content for 1806 release

Closes #31 and #30

See merge request Development/ThirdParty-plus!6

Allclean

@@ -7,26 +7,14 @@
 #    \\/     M anipulation  | Copyright (C) 2016-2017 OpenCFD Ltd.
 #------------------------------------------------------------------------------
 # License
-#     This file is part of OpenFOAM.
-#
-#     OpenFOAM is free software: you can redistribute it and/or modify it
-#     under the terms of the GNU General Public License as published by
-#     the Free Software Foundation, either version 3 of the License, or
-#     (at your option) any later version.
-#
-#     OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
-#     ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
-#     FITNESS FOR A PARTICULAR PURPOSE.  See the GNU General Public License
-#     for more details.
-#
-#     You should have received a copy of the GNU General Public License
-#     along with OpenFOAM.  If not, see <http://www.gnu.org/licenses/>.
+#     This file is part of OpenFOAM, licensed under GNU General Public License
+#     <http://www.gnu.org/licenses/>.
 #
 # Script
 #     Allclean
 #
 # Description
-#     Clean script for ThirdParty applications and libraries
+#     Clean script for ThirdParty applications/libraries
 #
 # ----------------------------------------------
 # NO USER-CONFIGURABLE SETTINGS WITHIN THIS FILE
@@ -94,6 +82,19 @@ do
 done
 
 
+# Clean various packages via 'wclean'
+for i in libccmio*/Make kahip*/lib/Make
+do
+    [ -d "$i" ] && (
+        echo
+        echo "${i%/Make}"
+        echo "    wclean"
+        echo
+        cd ${i%/Make} && wclean
+    )
+done
+
+
 # Clean out-of-source build directories
 if [ -d build ]
 then

Allwmake

@@ -4,33 +4,24 @@
 # \\      /  F ield         | OpenFOAM: The Open Source CFD Toolbox
 #  \\    /   O peration     |
 #   \\  /    A nd           | Copyright (C) 2011-2016 OpenFOAM Foundation
-#    \\/     M anipulation  | Copyright (C) 2016-2017 OpenCFD Ltd.
+#    \\/     M anipulation  | Copyright (C) 2016-2018 OpenCFD Ltd.
 #------------------------------------------------------------------------------
 # License
-#     This file is part of OpenFOAM.
-#
-#     OpenFOAM is free software: you can redistribute it and/or modify it
-#     under the terms of the GNU General Public License as published by
-#     the Free Software Foundation, either version 3 of the License, or
-#     (at your option) any later version.
-#
-#     OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
-#     ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
-#     FITNESS FOR A PARTICULAR PURPOSE.  See the GNU General Public License
-#     for more details.
-#
-#     You should have received a copy of the GNU General Public License
-#     along with OpenFOAM.  If not, see <http://www.gnu.org/licenses/>.
+#     This file is part of OpenFOAM, licensed under GNU General Public License
+#     <http://www.gnu.org/licenses/>.
 #
 # Script
 #     Allwmake
 #
 # Description
-#     Build script for ThirdParty
+#     Build script for ThirdParty applications/libraries
 #
 # ----------------------------------------------
 # NO USER-CONFIGURABLE SETTINGS WITHIN THIS FILE
 #------------------------------------------------------------------------------
+# Dynamic library endings (default is .so)
+[ "$(uname -s)" = Darwin ] && SO=dylib || SO=so
+
 # Run from third-party directory only
 cd ${0%/*} && wmakeCheckPwd "$WM_THIRD_PARTY_DIR" 2>/dev/null || {
     echo "Error (${0##*/}) : not located in \$WM_THIRD_PARTY_DIR"
@@ -44,13 +35,8 @@ cd ${0%/*} && wmakeCheckPwd "$WM_THIRD_PARTY_DIR" 2>/dev/null || {
 }
 . etc/tools/ThirdPartyFunctions
 #------------------------------------------------------------------------------
-# Compiler/linker settings for CMake/configure
-[ -n "$WM_CC" ]         &&  export CC="$WM_CC"
-[ -n "$WM_CXX" ]        &&  export CXX="$WM_CXX"
-[ -n "$WM_CFLAGS" ]     &&  export CFLAGS="$WM_CFLAGS"
-[ -n "$WM_CXXFLAGS" ]   &&  export CXXFLAGS="$WM_CXXFLAGS"
-[ -n "$WM_LDFLAGS" ]    &&  export LDFLAGS="$WM_LDFLAGS"
-
+exportCompiler true     # Compiler info + flags for CMake/configure
+exportLinker            # Linker flags for CMake/configure
 useGccFlag $@           # Scan arguments for a '-gcc' option
 
 warnBuildIssues()
@@ -65,8 +51,7 @@ warnBuildIssues()
 
 warnNotFound()
 {
-    echo "    Optional component ($1) was not found"
-    echo
+    echo "Optional component ($1) was not found"
 }
 
 #------------------------------------------------------------------------------
@@ -101,23 +86,32 @@ fi
 
 echo
 echo ========================================
-echo "Build Scotch decomposition library $SCOTCH_VERSION"
+echo "Scotch decomposition ($SCOTCH_VERSION)"
 echo "    $SCOTCH_ARCH_PATH"
 
 SCOTCH_SOURCE_DIR=$sourceBASE/$SCOTCH_VERSION
 
 # Needs generalizing, but works fairly well
-scotchMakefile=../../etc/wmakeFiles/scotch/Makefile.inc.i686_pc_linux2.shlib-OpenFOAM
+scotchMakefile=etc/makeFiles/scotch/Makefile.inc.OpenFOAM-"$(uname -s)".shlib
+
+[ -f $scotchMakefile ] || \
+    scotchMakefile=${scotchMakefile%/*}/Makefile.inc.OpenFOAM-Linux.shlib
 
 if [ -f $SCOTCH_ARCH_PATH/include/scotch.h \
-  -a -r $FOAM_EXT_LIBBIN/libscotch.so \
-  -a -r $FOAM_EXT_LIBBIN/libscotcherrexit.so ]
+  -a -r $FOAM_EXT_LIBBIN/libscotch.$SO \
+  -a -r $FOAM_EXT_LIBBIN/libscotcherrexit.$SO ]
 then
-    echo "    scotch header in $SCOTCH_ARCH_PATH/include"
-    echo "    scotch libs   in $FOAM_EXT_LIBBIN"
+    echo "    scotch include: $SCOTCH_ARCH_PATH/include"
+    echo "    scotch library: $FOAM_EXT_LIBBIN"
 elif [ -d "$SCOTCH_SOURCE_DIR" ]
 then
 (
+    # Older versions ok, but scotch-6.0.5a cannot build in parallel.
+    # Force serial build
+    export WM_NCOMPPROCS=1
+    echo "*** building scotch in serial ***"
+    echo
+
     cd $SCOTCH_SOURCE_DIR/src || exit 1
     export GIT_DIR=$SCOTCH_SOURCE_DIR/.git # Mask seeing our own git-repo
     rm -rf $SCOTCH_ARCH_PATH
@@ -132,6 +126,9 @@ then
     mkdir -p $incDIR    2>/dev/null
     mkdir -p $libDIR    2>/dev/null
 
+    # Makefile relative to this directory
+    scotchMakefile=../../$scotchMakefile
+
     if [ -f $scotchMakefile ]
     then
         rm -f Makefile.inc
@@ -145,6 +142,9 @@ then
     export CCS="${CC:-$WM_CC}"  # CCS (serial compiler)   default=$(CC)
     export CCP=$(whichMpicc)    # CCP (parallel compiler) default=mpicc
 
+    # Consistency for Intel-MPI and non-icc compilers
+    [ -n "$I_MPI_CC" ] || export I_MPI_CC="${CC:-$WM_CC}"
+
     make realclean 2>/dev/null  # Extra safety
     make -j $WM_NCOMPPROCS scotch \
      && make \
@@ -163,7 +163,7 @@ fi
 # and normal scotch was built (has include and library)
 if [ "${FOAM_MPI:-dummy}" != dummy ] && \
    [ -f $SCOTCH_ARCH_PATH/include/scotch.h \
-  -a -r $FOAM_EXT_LIBBIN/libscotch.so ] || \
+  -a -r $FOAM_EXT_LIBBIN/libscotch.$SO ] || \
 {
     # Report that the above tests failed and pass-through the failure
     echo
@@ -173,17 +173,22 @@ if [ "${FOAM_MPI:-dummy}" != dummy ] && \
 then
     echo
     echo ========================================
-    echo "Build pt-scotch decomposition library $SCOTCH_VERSION (with $FOAM_MPI)"
+    echo "pt-scotch decomposition ($SCOTCH_VERSION with $FOAM_MPI)"
     echo "    $SCOTCH_ARCH_PATH"
 
     if [ -f $SCOTCH_ARCH_PATH/include/$FOAM_MPI/ptscotch.h \
-      -a -r $FOAM_EXT_LIBBIN/$FOAM_MPI/libptscotch.so \
-      -a -r $FOAM_EXT_LIBBIN/$FOAM_MPI/libptscotcherrexit.so ]
+      -a -r $FOAM_EXT_LIBBIN/$FOAM_MPI/libptscotch.$SO \
+      -a -r $FOAM_EXT_LIBBIN/$FOAM_MPI/libptscotcherrexit.$SO ]
     then
-        echo "    ptscotch header in $SCOTCH_ARCH_PATH/include/$FOAM_MPI"
-        echo "    ptscotch libs   in $FOAM_EXT_LIBBIN/$FOAM_MPI"
+        echo "    ptscotch include: $SCOTCH_ARCH_PATH/include/$FOAM_MPI"
+        echo "    ptscotch library: $FOAM_EXT_LIBBIN/$FOAM_MPI"
     else
     (
+        # Older versions ok, but scotch-6.0.5a cannot build in parallel.
+        # Force serial build
+        export WM_NCOMPPROCS=1
+        echo "*** building pt-scotch in serial ***"
+
         cd $SCOTCH_SOURCE_DIR/src || exit 1
         export GIT_DIR=$SCOTCH_SOURCE_DIR/.git # Mask seeing our own git-repo
         echo
@@ -209,6 +214,9 @@ then
         export CCS="${CC:-$WM_CC}"  # CCS (serial compiler)   default=$(CC)
         export CCP=$(whichMpicc)    # CCP (parallel compiler) default=mpicc
 
+        # Consistency for Intel-MPI and non-icc compilers
+        [ -n "$I_MPI_CC" ] || export I_MPI_CC="${CC:-$WM_CC}"
+
         make realclean 2>/dev/null  # Extra safety
         make -j $WM_NCOMPPROCS ptscotch \
          && make \
@@ -233,55 +241,46 @@ fi
 
 #------------------------------------------------------------------------------
 
-# Metis is optional
 echo
 echo ========================================
-echo Build Metis decomposition
-
-# Get METIS_VERSION, METIS_ARCH_PATH
-if settings=$($WM_PROJECT_DIR/bin/foamEtcFile config.sh/metis)
+# Get KAHIP_ARCH_PATH
+if settings=$($WM_PROJECT_DIR/bin/foamEtcFile config.sh/kahip)
 then
     . $settings
 fi
-
-METIS_SOURCE_DIR=$sourceBASE/$METIS_VERSION
-
-if [ -f $METIS_ARCH_PATH/include/metis.h \
-  -a -r $FOAM_EXT_LIBBIN/libmetis.so ]
+if [ -n "$KAHIP_ARCH_PATH" ]
 then
-    echo "    metis header in $METIS_ARCH_PATH/include"
-    echo "    metis libs   in $FOAM_EXT_LIBBIN"
-elif [ -d "$METIS_SOURCE_DIR" ]
-then
-(
-    cd $METIS_SOURCE_DIR || exit 1
-    export GIT_DIR=$PWD/.git # Mask seeing our own git-repo
-    rm -rf $METIS_ARCH_PATH
-
-    # Adjust metis integer size to match OpenFOAM label-size
-    sed -i -e 's=\(#define IDXTYPEWIDTH\).*=\1 '$WM_LABEL_SIZE'=' \
-        include/metis.h
-
-    # No config option for the library location.
-    # - build normally and use mv to relocate it
-
-    make config shared=1 prefix=$METIS_ARCH_PATH \
-     && make -j $WM_NCOMPPROCS install \
-     && mv $METIS_ARCH_PATH/lib/libmetis.so $FOAM_EXT_LIBBIN
-
-    rmdir $METIS_ARCH_PATH/lib 2>/dev/null || true # Failed rmdir is uncritical
-) || warnBuildIssues METIS
+    echo KaHIP decomposition
+    ./makeKAHIP -test "$KAHIP_ARCH_PATH" || \
+    ./makeKAHIP || warnBuildIssues KAHIP
 else
-    warnNotFound METIS
+    warnNotFound KAHIP   # METIS is optional
+fi
+
+#------------------------------------------------------------------------------
+echo
+echo ========================================
+
+# Get METIS_ARCH_PATH
+if settings=$($WM_PROJECT_DIR/bin/foamEtcFile config.sh/metis)
+then
+    . $settings
+fi
+if [ -n "$METIS_ARCH_PATH" ]
+then
+    echo Metis decomposition
+    ./makeMETIS -test "$METIS_ARCH_PATH" || \
+    ./makeMETIS || warnBuildIssues METIS
+else
+    warnNotFound METIS   # METIS is optional
 fi
 
-
 #------------------------------------------------------------------------------
 echo
 echo ========================================
-echo Build CGAL
 if [ -n "$CGAL_ARCH_PATH" ]
 then
+    echo "CGAL/boost"
     ./makeCGAL -test "$CGAL_ARCH_PATH" "$BOOST_ARCH_PATH" || \
     ./makeCGAL || warnBuildIssues CGAL
 else
@@ -290,9 +289,9 @@ fi
 
 echo
 echo ========================================
-echo Build FFTW
 if [ -n "$FFTW_ARCH_PATH" ]
 then
+    echo FFTW
     ./makeFFTW -test "$FFTW_ARCH_PATH" || \
     ./makeFFTW || warnBuildIssues FFTW
 else

BUILD.md

@@ -3,7 +3,7 @@
    | =========                 |                                              |
    | \\      /  F ield         | OpenFOAM: The Open Source CFD Toolbox        |
    |  \\    /   O peration     |                                              |
-   |   \\  /    A nd           | Copyright (C) 2016-2017 OpenCFD Ltd.         |
+   |   \\  /    A nd           | Copyright (C) 2016-2018 OpenCFD Ltd.         |
    |    \\/     M anipulation  |                                              |
    |--------------------------------------------------------------------------|
   -->
@@ -83,9 +83,9 @@ automatically as part of the top-level OpenFOAM `Allwmake`.
 Nonetheless it may be necessary or useful to build various
 ThirdParty components prior to building OpenFOAM itself.
 
+### Bootstrapping *(optional)*
 
-### Build Sequence
-1. `makeGcc` _or_ `makeLLVM` <a name="makeGcc"></a> *(optional)*
+* `makeGcc` _or_ `makeLLVM` <a name="makeGcc"></a>
    - Makes a third-party [gcc](#gcc-compiler) or [clang](#clang-compiler) installation,
      which is needed if the system gcc is [too old](#gcc-compiler).
      If your system compiler is recent enough, you can skip this step.
@@ -93,45 +93,100 @@ ThirdParty components prior to building OpenFOAM itself.
      OpenFOAM `etc/bashrc` or your equivalent `prefs.sh` file:
      - `WM_COMPILER_TYPE=ThirdParty`
      - `WM_COMPILER=Gcc48` (for example)
-     - or `WM_COMPILER=Clang` and adjust the `clang_version` entry in the OpenFOAM
+     - `WM_COMPILER=Clang40` (for example)
+     - or `WM_COMPILER=Clang` and adjust `clang_version` in the OpenFOAM
      `etc/config.sh/compiler` or equivalent.
    - More description is contained in the header comments of the
      `makeGcc` and `makeLLVM` files.
    - *Attention*: If you are building a newer version of clang, you may need to
      update your CMake beforehand.
-2. `makeCmake`  *(optional)*
+* `makeCmake`
    - Makes a third-party [CMake](#general-packages) installation, which is
      needed if a system CMake does not exist or is [too old](#min-cmake),
    - Note that CMake is being used by an number of third-party packages
      (CGAL, LLVM, ParaView, VTK, ...)
      so this may become an increasingly important aspect of the build.
-3. `Allwmake`
+
+Note that the order of the bootstrapping process may need to be
+reversed, or even require a few loops. For example, if you may need a
+newer version of CMake before being able to build LLVM/Clang and
+subsequently use the newly build clang to create a newer version of
+CMake in the desired location.
+
+Additionally, if you are using clang but with ThirdParty locations for
+gmp/mpfr you will need some extra work. Here is an example:
+
+* Compile a new ThirdParty clang version:
+
+      ./makeLLVM llvm-4.0.1
+
+* Now adjust the OpenFOAM `prefs.sh` to use the new compiler settings,
+  and update the OpenFOAM environment (eg, `wmRefresh`)
+
+* Next use (abuse) the `makeGcc` script to compile gmp/mpfr libraries.
+  It is best to pass the desired versions explicitly, and necessary
+  to set the CC/CXX variables so that the correct compiler is used:
+
+      CC=clang CXX=clang++  ./makeGcc gmp-6.1.2 mpfr-4.0.0 gcc-system
+
+  specifying `gcc-system` effectively disables building of gcc,
+  but will build the gmp/mpfr components.
+
+* As a final step, it will be necessary to add the ThirdParty
+  gmp/mpfr locations in the OpenFOAM config files since they are
+  normally only used in combination with a ThirdParty gcc.
+  The location to make these changes is in the `etc/config.sh/CGAL`,
+  since this is the component that uses the mpfr library.
+  For example,
+
+      gmp_version=gmp-6.1.2
+      mpfr_version=mpfr-4.0.0
+
+      export GMP_ARCH_PATH=$WM_THIRD_PARTY_DIR/platforms/$WM_ARCH$WM_COMPILER_ARCH/$gmp_version
+      export GMP_ARCH_PATH=$WM_THIRD_PARTY_DIR/platforms/$WM_ARCH$WM_COMPILER_ARCH/$mpfr_version
+
+* Update update the OpenFOAM environment (eg, `wmRefresh`) again.
+
+
+### Build Sequence
+
+1. `Allwmake`
    - This will be automatically invoked by the top-level OpenFOAM `Allwmake`, but
      can also be invoked directly to find possible build errors.
    - Builds an mpi library (openmpi or mpich), scotch decomposition, boost, CGAL, FFTW.
-   - If the optional metis directory is found, it will also be compiled.
-4. `makeParaView`  *(optional but highly recommended)*
+   - If the optional kahip or metis  directories are found, they will also be compiled.
+2. `makeParaView`  *(optional but highly recommended)*
    - This is optional, but extremely useful for visualization and for
      run-time post-processing function objects.
      You can build this at a later point in time, but then you should
      remember to rebuild the post-processing function objects and the
      reader module as well.
-5. Make any additional optional components
+3. Make any additional optional components
 
 
 #### Optional Components
 
 `makeADIOS`
-- Only required for ADIOS support,
+- Only required for [ADIOS](#parallel) support,
   which is currently staged in the [add-ons repository][link AddOns].
 
 `makeCGAL`
-- Builds third-party boost and CGAL.
+- Builds [boost](#general-packages) and [CGAL](#general-packages).
   Automatically invoked from the ThirdParty `Allwmake`,
   but can be invoked directly to resolve possible build errors.
 
 `makeFFTW`
-- Builds third-party FFTW.
+- Builds [FFTW](#general-packages).
+  Automatically invoked from the ThirdParty `Allwmake`,
+  but can be invoked directly to resolve possible build errors.
+
+`makeKAHIP`
+- Builds [KaHIP](#parallel) decomposition library.
+  Automatically invoked from the ThirdParty `Allwmake`,
+  but can be invoked directly to resolve possible build errors.
+
+`makeMETIS`
+- Builds [METIS](#parallel) decomposition library.
   Automatically invoked from the ThirdParty `Allwmake`,
   but can be invoked directly to resolve possible build errors.
 
@@ -141,17 +196,14 @@ ThirdParty components prior to building OpenFOAM itself.
 `makeCCMIO`
 - Only required for conversion to/from STARCD/STARCCM+ files.
 
-`makeTecio`
-- Only required for conversion of results to Tecplot format.
-
 `makeMesa`, `makeVTK`
 - Additional support for building offscreen rendering components.
   Useful if you want to render on computer servers without graphics cards.
-  The `makeParaView.example` and `makeVTK.example` files provide some useful
+  The `makeParaView.example` and `makeVTK.example` files offer some
   suggestions about compiling such a configuration.
 
 `makeQt`
-- Script to build a [third-party installation of Qt](#makeQt), including qmake.
+- Script to build a [Qt](#makeQt), including qmake.
 - Possibly needed for `makeParaView`.
 - The associated `etc/relocateQt` may be of independent use.
   Read the file for more details.
@@ -170,13 +222,16 @@ and save some disk space.
 
 ## Build Notes
 
+### CGAL
+- The zlib library and zlib development headers are required.
+
 ### Scotch
 - The zlib library and zlib development headers are required.
 
 
 ### Mesa
 - Needed for off-screen rendering.
-- Building with [mesa-11][older11 mesa] and [mesa-13][older13 mesa] both
+- Building with [mesa-11][link mesa11] and [mesa-13][link mesa13] both
   seem okay, as does building with [mesa-17][link mesa].
 - Building with mesa-12 is not possible since it fails to create
   the necessary `include/GL` directory and `osmesa.h` file.
@@ -188,17 +243,17 @@ and save some disk space.
   sources that are bundled with ParaView.
   For example, by using a symbolic link:
 
-      ln -s ParaView-v5.4.0/VTK VTK-8.1.0
+      ln -s ParaView-v5.5.2/VTK VTK-9.0.0
 
   The appropriate VTK version number can be found from the contents of
   the `vtkVersion.cmake` file.
   For example,
 
-      $ cat ParaView-v5.4.0/VTK/CMake/vtkVersion.cmake
+      $ cat ParaView-v5.5.2/VTK/CMake/vtkVersion.cmake
 
       # VTK version number components.
-      set(VTK_MAJOR_VERSION 8)
-      set(VTK_MINOR_VERSION 1)
+      set(VTK_MAJOR_VERSION 9)
+      set(VTK_MINOR_VERSION 0)
       set(VTK_BUILD_VERSION 0)
 
 ### ParaView
@@ -207,27 +262,44 @@ and save some disk space.
   required.
   See additional notes below about [making Qt](#makeQt) if necessary.
 
-#### 5.4.0
+**NOTE** this step may not be entirely successful for your particular
+system. Building ParaView itself is generally not a significant problem
+but its dependency on particular Qt versions can be a problem.
+
+If you fail at this step due to Qt dependencies, you may have success
+building a slightly older Qt version. Another alternative may be to
+use the ParaView-5.4 sources that were included in the ThirdParty-v1712
+source pack. This, however, has never been tested in combination with
+the OpenFOAM Catalyst insitu visualization.
+
+
+#### 5.5.x binary package
+
+For general functionality, the paraview version distributed with
+the operating system or a [binary package][download ParaView]])
+may be sufficient for your needs.
+- No known issues with the native OpenFOAM reader.
+
+
+Using a binary package does mean you miss these elements (which may or
+may not be important for you):
+- cannot visualize a `blockMeshDict`
+- cannot build Catalyst insitu visualization
+- no alternative OpenFOAM reader module for some special features not
+  found in the native OpenFOAM reader.
+
+#### 5.5.x
+- Requires patching for the vtk-m configuration (on some systems).
+- Recommended patching for ParaView Catalyst.
+- Recommended patching for file series
+  No known issues with the native OpenFOAM reader.
+
+#### 5.4.x
 - Compiles without patching.
   No known issues with the native OpenFOAM reader.
 
-#### 5.3.0
-- Compiles without patching.
-  The native OpenFOAM reader has a bug reading tetrahedrals.
-
-#### 5.2.0
-- Compiles without patching, but the native OpenFOAM reader is
-  broken in this version.
-
-#### 4.4.0/5.0.0/5.0.1/5.1.2
-- When using `makeParaView`, the following patches will be automatically
-  applied (see the `etc/patches` directory):
-  - Bugfix for STL reader - affects 4.4.0 only.
-  - Broken installation (ui_pqExportStateWizard.h) - affects 4.4.0/5.0.0/5.0.1/5.1.x
-  - Building with gcc-6.1.0 - affects 4.4.0/5.0.0/5.0.1 (patch applied for 5.0.1)
-  - The SciberQuestToolKit plugin fails to compile with gcc-6.1.0 and causes
-    the compilation of ParaView to halt. The easiest solution is to delete
-    the ParaView-5.0.1/Plugins/SciberQuestToolKit directory.
+#### 5.3.0 and older are neither recommended nor supported
+- Various compilation issues and known bugs.
 
 ### ADIOS
 - The github release currently requires GNU autoconf tools (eg,
@@ -242,15 +314,15 @@ and save some disk space.
 - Building a third-party Qt installation (prior to building ParaView) requires
   some additional effort, but should nonetheless work smoothly.
 
-1. Download a [*qt-everywhere-opensource-src*][link Qt] package and
+1. Download a [*qt-everywhere-opensource-src*][link Qt5] package and
    unpack in the third-party directory.
 2. Use the `makeQt` script with the QT version number. For example,
 
-       ./makeQt 4.8.7
+       ./makeQt 5.9.3
 
 3. Build ParaView using this third-party QT. For example,
 
-       ./makeParaView -qt-4.8.7 5.0.1
+       ./makeParaView -qt-5.9.3  5.5.2
 
 - ParaView versions prior to 5.3.0 do not properly support QT5.
 
@@ -259,6 +331,11 @@ and save some disk space.
   central location), you will need to use the `etc/relocateQt` script
   afterwards.
 
+*Note* On some older systems it can be quite difficult to build the
+latest QT. In these cases, it is sometimes possible to build a
+slightly older QT (eg, [qt-5.6.3][link Qt56]) instead.
+
+
 ---
 
 ## Versions
@@ -299,26 +376,22 @@ install the 32-bit development libraries by default.
 
 ### Clang Compiler <a name="clang-compiler"></a>
 
-The minimum version of clang required is 3.3.
+The minimum version of clang required is 3.5.
 
 *Attention*: If you are building a newer version of clang, you may need to
-update your CMake beforehand.
-GNU *configure* can only be used prior to clang version 3.9.
+update your CMake beforehand since GNU *configure* can only be used prior
+to clang version 3.9.
+
+If your system gcc is particularly old
+(see [minimum gcc requirements for clang](#min-gcc))
+you may have additional hurdles to using the newest versions of clang.
 
 
 | Name                  | Location
 |-----------------------|------------------------
-| [clang][page clang]   | [download][link clang]
-| [llvm][page llvm]     | [download][link llvm]
-
-
-### Parallel Processing <a name="parallel"></a>
-
-| Name                  | Location
-|-----------------------|------------------------
-| [adios][page adios]   | [repo][repo adios] or [github download][link adios] or [alt download][altlink adios]
-| [scotch, ptscotch][page scotch] | [download][link scotch]
-| [openmpi][page openmpi] | [download][link openmpi]. The newer [openmpi][newer openmpi] make exhibit stability issues.
+| [clang][page clang]   | [download][link clang] or [newer][newer clang]
+| [llvm][page llvm]     | [download][link llvm] or [newer][newer llvm]
+| [openmp][page omp]    | [download][link omp] or [newer][newer omp]
 
 
 ### General <a name="general-packages"></a>
@@ -330,17 +403,27 @@ GNU *configure* can only be used prior to clang version 3.9.
 | [CGAL][page CGAL]     | [download][link CGAL]
 | [FFTW][page FFTW]     | [download][link FFTW]
 | [ADF/CGNS][page CGNS], ccm | [link ccmio][link ccmio]
-| [tecio][page tecio]   | [link tecio][link tecio]
 | gperftools            | [repo][repo gperftools] or [download][link gperftools]
 
 
+### Parallel Processing <a name="parallel"></a>
+
+| Name                  | Location
+|-----------------------|------------------------
+| [openmpi][page openmpi] | [download][link openmpi]. The newer [openmpi][newer openmpi] make exhibit stability issues.
+| [adios][page adios]   | [repo][repo adios] or [github download][link adios] or [alt download][altlink adios]
+| [scotch, ptscotch][page scotch] | [download][link scotch]
+| [kahip][page kahip] | [download][link kahip]
+| [metis][page metis] | [download][link metis]
+
+
 ### Visualization <a name="viz-version"></a>
 
 | Name                  | Location
 |-----------------------|------------------------
-| [MESA][page mesa]     | [download][link mesa] or [older 13][older13 mesa], [older 11][older11 mesa]
-| [ParaView][page ParaView] | [download][link ParaView]
-| [Qt][page Qt]         | [repo][repo Qt] or [download][link Qt]. The newer [Qt5][newer Qt5] only works with ParaView-5.3.0 and later.
+| [MESA][page mesa]     | [download][link mesa] or [older 13][link mesa13], [older 11][link mesa11]
+| [ParaView][page ParaView] | [download][link ParaView] or [older paraview-54][link ParaView54] or [binaries][download ParaView]
+| [Qt][page Qt]         | [QT5][link Qt5] for ParaView-5.3.0 and later, or the [older qt-56][link Qt56] for older systems.
 
 
 ### CMake Minimum Requirements <a name="min-cmake"></a>
@@ -348,18 +431,15 @@ GNU *configure* can only be used prior to clang version 3.9.
 The minimum CMake requirements for building various components.
 
     2.8         llvm-3.4.2
-    2.8.8       ParaView-5.0.1
     2.8.11      CGAL-4.9
+    2.8.11      CGAL-4.11
     2.8.12.2    llvm-3.7.0
     2.8.12.2    llvm-3.8.0
     2.8.4       cmake-3.6.0
-    3.3         ParaView-5.1.2
-    3.3         ParaView-5.2.0
-    3.3         ParaView-5.3.0
-    3.3         ParaView-5.4.0
+    3.3         ParaView-5.5.2
     3.4.3       llvm-3.9.1
-    3.4.3       llvm-4.0.0
-    3.5         ParaView-5.1.0
+    3.4.3       llvm-4.0.0 - llvm-6.0.0
+    3.6         ADIOS2
 
 
 ### GCC Minimum Requirements <a name="min-gcc"></a>
@@ -371,6 +451,10 @@ The minimum gcc/g++ requirements for building various components.
     4.7         llvm-3.5.2
     4.4         llvm-3.4.2
 
+If your system gcc/g++ is too old to build the desired llvm/clang
+version, you may need to build a lower llvm/clang version and then use
+that clang compiler for building the newer llvm/clang version.
+
 
 <!-- gcc-related -->
 [page gcc]:       http://gcc.gnu.org/releases.html
@@ -385,25 +469,35 @@ The minimum gcc/g++ requirements for building various components.
 
 
 <!-- clang-related -->
-[page clang]:     http://llvm.org/
 [page llvm]:      http://llvm.org/
+[page clang]:     http://clang.llvm.org/
+[page omp]:       http://openmp.llvm.org/
 
 [link clang]:     http://llvm.org/releases/3.7.1/cfe-3.7.1.src.tar.xz
 [link llvm]:      http://llvm.org/releases/3.7.1/llvm-3.7.1.src.tar.xz
+[link omp]:       http://llvm.org/releases/3.7.1/openmp-3.7.1.src.tar.xz
 
-[newer clang]:    http://llvm.org/releases/4.0.0/cfe-4.0.0.src.tar.xz
-[newer llvm]:     http://llvm.org/releases/4.0.0/llvm-4.0.0.src.tar.xz
+[newer clang]:    http://llvm.org/releases/4.0.1/cfe-4.0.1.src.tar.xz
+[newer llvm]:     http://llvm.org/releases/4.0.1/llvm-4.0.1.src.tar.xz
+[newer omp]:      http://llvm.org/releases/4.0.1/openmp-4.0.1.src.tar.xz
 
 
 <!-- parallel -->
 [page adios]:     https://www.olcf.ornl.gov/center-projects/adios/
 [repo adios]:     https://github.com/ornladios/ADIOS
-[link adios]:     https://github.com/ornladios/ADIOS/archive/v1.11.1.tar.gz
-[altlink adios]:  http://users.nccs.gov/%7Epnorbert/adios-1.11.1.tar.gz
+[link adios]:     https://github.com/ornladios/ADIOS/archive/v1.13.0.tar.gz
+[altlink adios]:  http://users.nccs.gov/%7Epnorbert/adios-1.13.0.tar.gz
 [page zfp]:       http://computation.llnl.gov/projects/floating-point-compression/zfp-versions
 
 [page scotch]:    https://www.labri.fr/perso/pelegrin/scotch/
 [link scotch]:    https://gforge.inria.fr/frs/download.php/file/34099/scotch_6.0.3.tar.gz
+[link scotch]:    https://gforge.inria.fr/frs/download.php/file/37398/scotch_6.0.5a.tar.gz
+
+[page kahip]:     http://algo2.iti.kit.edu/documents/kahip/
+[link kahip]:     http://algo2.iti.kit.edu/schulz/software_releases/KaHIP_2.00.tar.gz
+
+[page metis]:     http://glaros.dtc.umn.edu/gkhome/metis/metis/overview
+[link metis]:     http://glaros.dtc.umn.edu/gkhome/fetch/sw/metis/metis-5.1.0.tar.gz
 
 [page openmpi]:   http://www.open-mpi.org/
 [link openmpi]:   https://www.open-mpi.org/software/ompi/v1.10/downloads/openmpi-1.10.4.tar.bz2
@@ -421,15 +515,12 @@ The minimum gcc/g++ requirements for building various components.
 [link CGAL]:      https://github.com/CGAL/cgal/releases/download/releases%2FCGAL-4.9.1/CGAL-4.9.1.tar.xz
 
 [page FFTW]:      http://www.fftw.org/
-[link FFTW]:      http://www.fftw.org/fftw-3.3.6-pl1.tar.gz
+[link FFTW]:      http://www.fftw.org/fftw-3.3.7.tar.gz
 
 [page cgns]:      http://cgns.github.io/
 [link ccmio]:     http://portal.nersc.gov/project/visit/third_party/libccmio-2.6.1.tar.gz (check usage conditions)
 [altlink ccmio]:  http://portal.nersc.gov/svn/visit/trunk/third_party/libccmio-2.6.1.tar.gz (check usage conditions)
 
-[page tecio]:     http://www.tecplot.com/
-[link tecio]:     http://www.tecplot.com/my/tecio-library/ (needs registration)
-
 [repo gperftools]: https://github.com/gperftools/gperftools
 [link gperftools]: https://github.com/gperftools/gperftools/releases/download/gperftools-2.5/gperftools-2.5.tar.gz
 
@@ -437,34 +528,38 @@ The minimum gcc/g++ requirements for building various components.
 <!-- Visualization -->
 
 [page ParaView]:  http://www.paraview.org/
-[link ParaView]:  http://www.paraview.org/files/v5.4/ParaView-v5.4.0.tar.gz
+[download ParaView]: https://www.paraview.org/download/
+[link ParaView54]: http://www.paraview.org/files/v5.4/ParaView-v5.4.1.tar.gz
+[link ParaView]:   http://www.paraview.org/files/v5.5/ParaView-v5.5.2.tar.gz
 
 [page mesa]:  http://mesa3d.org/
 [link mesa]:  ftp://ftp.freedesktop.org/pub/mesa/mesa-17.1.1.tar.xz
-[older13 mesa]: ftp://ftp.freedesktop.org/pub/mesa/13.0.6/mesa-13.0.6.tar.xz
-[older11 mesa]: ftp://ftp.freedesktop.org/pub/mesa/older-versions/11.x/11.2.2/mesa-11.2.2.tar.xz
+[link mesa13]: ftp://ftp.freedesktop.org/pub/mesa/13.0.6/mesa-13.0.6.tar.xz
+[link mesa11]: ftp://ftp.freedesktop.org/pub/mesa/older-versions/11.x/11.2.2/mesa-11.2.2.tar.xz
 
 [page Qt]: https://www.qt.io/download-open-source/
 [repo Qt]: http://code.qt.io/cgit/qt-creator/qt-creator.git
-[link Qt]: http://download.qt.io/official_releases/qt/4.8/4.8.7/qt-everywhere-opensource-src-4.8.7.tar.gz
-[newer Qt5]: http://download.qt.io/official_releases/qt/5.9/5.9.0/single/qt-everywhere-opensource-src-5.9.0.tar.xz
+[link Qt56]: http://download.qt.io/official_releases/qt/5.6/5.6.3/single/qt-everywhere-opensource-src-5.6.3.tar.xz
+[link Qt5]: http://download.qt.io/official_releases/qt/5.9/5.9.3/single/qt-everywhere-opensource-src-5.9.3.tar.xz
 
 <!-- OpenFOAM -->
 
 [link AddOns]: https://develop.openfoam.com/Community/OpenFOAM-addOns
-[link community-projects]: http://www.openfoam.com/services/community-projects.php
+[link community-projects]: http://www.openfoam.com/community/projects.php
 
+---
 
 <!-- Standard Footer -->
 ## Additional OpenFOAM Links
 
 - [Community AddOns][link AddOns] repository
 - [Collaborative and Community-based Developments][link community-projects]
-- [Download](http://www.openfoam.com/releases) and
-  [installation instructions](http://www.openfoam.com/download/installation.php)
+- [Download](http://www.openfoam.com/download) and
+  [installation instructions](http://www.openfoam.com/code/build-guide.php)
 - [Documentation](http://www.openfoam.com/documentation)
-- [Reporting bugs/issues](http://www.openfoam.com/code/bug-reporting.php) (including bugs/suggestions/feature requests) in OpenFOAM+
+- [Reporting bugs/issues](http://www.openfoam.com/code/bug-reporting.php) (including bugs/suggestions/feature requests) in OpenFOAM
 - [Contacting OpenCFD](http://www.openfoam.com/contact)
+
 ---
 
-Copyright 2016-2017 OpenCFD Ltd
+Copyright 2016-2018 OpenCFD Ltd

README.md

@@ -3,7 +3,7 @@
    | =========                 |                                              |
    | \\      /  F ield         | OpenFOAM: The Open Source CFD Toolbox        |
    |  \\    /   O peration     |                                              |
-   |   \\  /    A nd           | Copyright (C) 2016 OpenCFD Ltd.              |
+   |   \\  /    A nd           | Copyright (C) 2016-2017 OpenCFD Ltd.         |
    |    \\/     M anipulation  |                                              |
    |--------------------------------------------------------------------------|
   -->
@@ -65,19 +65,26 @@ ThirdParty components prior to building OpenFOAM itself.
 
 ### Build Details
 
-More details can be found the ThirdParty ./BUILD.md information.
+More details can be found the ThirdParty BUILD.md information.
 
+<!-- OpenFOAM -->
+
+[link AddOns]: https://develop.openfoam.com/Community/OpenFOAM-addOns
+[link community-projects]: http://www.openfoam.com/community/projects.php
+
+---
 
 <!-- Standard Footer -->
 ## Additional OpenFOAM Links
 
-- [Download](http://www.openfoam.com/releases) and
-  [installation instructions](http://www.openfoam.com/download/installation.php)
+- [Community AddOns][link AddOns] repository
+- [Collaborative and Community-based Developments][link community-projects]
+- [Download](http://www.openfoam.com/download) and
+  [installation instructions](http://www.openfoam.com/code/build-guide.php)
 - [Documentation](http://www.openfoam.com/documentation)
-- [Reporting bugs/issues (including bugs/suggestions/feature requests) in OpenFOAM+](http://www.openfoam.com/code/bug-reporting.php)
-- [Collaborative and Community-based Developments](http://www.openfoam.com/services/community-projects.php)
+- [Reporting bugs/issues](http://www.openfoam.com/code/bug-reporting.php) (including bugs/suggestions/feature requests) in OpenFOAM
 - [Contacting OpenCFD](http://www.openfoam.com/contact)
 
 ---
 
-Copyright 2016 OpenCFD Ltd
+Copyright 2016-2017 OpenCFD Ltd

SOURCES.txt

@@ -0,0 +1,80 @@
+Short summary of third-party software versions for recent OpenFOAM versions.
+
+OpenFOAM-1806
+---------------
+CGAL-4.9.1
+ParaView-5.5.2      *update*
+boost_1_64_0
+fftw-3.3.7
+openmpi-1.10.4
+scotch_6.0.3
+kahip-2.00d
+
+
+OpenFOAM-1712
+---------------
+CGAL-4.9.1
+ParaView-5.4.1      *minor*
+boost_1_64_0
+fftw-3.3.7          *minor*
+openmpi-1.10.4
+scotch_6.0.3
+kahip-2.00d         *new*
+
+
+OpenFOAM-1706
+---------------
+CGAL-4.9.1          *minor*
+ParaView-5.4.0      *update*
+boost_1_64_0        *update*
+fftw-3.3.6-pl1      *minor*
+openmpi-1.10.4
+scotch_6.0.3
+
+
+OpenFOAM-1612
+---------------
+CGAL-4.9            *update*
+ParaView-5.0.1      *update*
+boost_1_62_0        *update*
+fftw-3.3.5          *minor*
+openmpi-1.10.4      *minor*
+scotch_6.0.3
+
+
+OpenFOAM-1606
+---------------
+CGAL-4.8            *update*
+ParaView-5.0.1      *update*
+boost_1_61_0        *new*
+fftw-3.3.4          *new*
+openmpi-1.10.2      *minor*
+scotch_6.0.3
+
+
+OpenFOAM-3.0+
+---------------
+CGAL-4.7            *update*
+ParaView-4.4.0      *update*
+openmpi-1.10.0      *update*
+scotch_6.0.3
+
+
+OpenFOAM-2.4
+---------------
+CGAL-4.6            *update*
+ParaView-4.1.0
+openmpi-1.8.5       *update*
+scotch_6.0.3        *update*
+
+
+---------------
+OpenFOAM-2.3
+---------------
+CGAL-4.3
+ParaView-4.1.0
+openmpi-1.6.5
+scotch_6.0.0
+
+
+---------------

etc/makeFiles/kahip/files

@@ -0,0 +1,70 @@
+/* NOTE: make any changes to this file in etc/wmakeFiles/ */
+
+interface/kaHIP_interface.cpp
+
+/* List obtained from SConscript, libkaffpa_files = [ ... ] entry */
+
+data_structure/graph_hierarchy.cpp
+algorithms/strongly_connected_components.cpp
+algorithms/topological_sort.cpp
+algorithms/push_relabel.cpp
+io/graph_io.cpp
+tools/quality_metrics.cpp
+tools/random_functions.cpp
+tools/graph_extractor.cpp
+tools/misc.cpp
+tools/partition_snapshooter.cpp
+partition/graph_partitioner.cpp
+partition/w_cycles/wcycle_partitioner.cpp
+partition/coarsening/coarsening.cpp
+partition/coarsening/contraction.cpp
+partition/coarsening/edge_rating/edge_ratings.cpp
+partition/coarsening/matching/matching.cpp
+partition/coarsening/matching/random_matching.cpp
+partition/coarsening/matching/gpa/path.cpp
+partition/coarsening/matching/gpa/gpa_matching.cpp
+partition/coarsening/matching/gpa/path_set.cpp
+partition/coarsening/clustering/node_ordering.cpp
+partition/coarsening/clustering/size_constraint_label_propagation.cpp
+partition/initial_partitioning/initial_partitioning.cpp
+partition/initial_partitioning/initial_partitioner.cpp
+partition/initial_partitioning/initial_partition_bipartition.cpp
+partition/initial_partitioning/initial_refinement/initial_refinement.cpp
+partition/initial_partitioning/bipartition.cpp
+partition/initial_partitioning/initial_node_separator.cpp
+partition/uncoarsening/uncoarsening.cpp
+partition/uncoarsening/separator/area_bfs.cpp
+partition/uncoarsening/separator/vertex_separator_algorithm.cpp
+partition/uncoarsening/separator/vertex_separator_flow_solver.cpp
+partition/uncoarsening/refinement/cycle_improvements/greedy_neg_cycle.cpp
+partition/uncoarsening/refinement/cycle_improvements/problem_factory.cpp
+partition/uncoarsening/refinement/cycle_improvements/augmented_Qgraph.cpp
+partition/uncoarsening/refinement/mixed_refinement.cpp
+partition/uncoarsening/refinement/label_propagation_refinement/label_propagation_refinement.cpp
+partition/uncoarsening/refinement/refinement.cpp
+partition/uncoarsening/refinement/quotient_graph_refinement/2way_fm_refinement/two_way_fm.cpp
+partition/uncoarsening/refinement/quotient_graph_refinement/flow_refinement/two_way_flow_refinement.cpp
+partition/uncoarsening/refinement/quotient_graph_refinement/flow_refinement/boundary_bfs.cpp
+partition/uncoarsening/refinement/quotient_graph_refinement/flow_refinement/flow_solving_kernel/cut_flow_problem_solver.cpp
+partition/uncoarsening/refinement/quotient_graph_refinement/flow_refinement/most_balanced_minimum_cuts/most_balanced_minimum_cuts.cpp
+partition/uncoarsening/refinement/quotient_graph_refinement/quotient_graph_refinement.cpp
+partition/uncoarsening/refinement/quotient_graph_refinement/complete_boundary.cpp
+partition/uncoarsening/refinement/quotient_graph_refinement/partial_boundary.cpp
+partition/uncoarsening/refinement/quotient_graph_refinement/quotient_graph_scheduling/quotient_graph_scheduling.cpp
+partition/uncoarsening/refinement/quotient_graph_refinement/quotient_graph_scheduling/simple_quotient_graph_scheduler.cpp
+partition/uncoarsening/refinement/quotient_graph_refinement/quotient_graph_scheduling/active_block_quotient_graph_scheduler.cpp
+partition/uncoarsening/refinement/kway_graph_refinement/kway_graph_refinement.cpp
+partition/uncoarsening/refinement/kway_graph_refinement/kway_graph_refinement_core.cpp
+partition/uncoarsening/refinement/kway_graph_refinement/kway_graph_refinement_commons.cpp
+partition/uncoarsening/refinement/cycle_improvements/augmented_Qgraph_fabric.cpp
+partition/uncoarsening/refinement/cycle_improvements/advanced_models.cpp
+partition/uncoarsening/refinement/kway_graph_refinement/multitry_kway_fm.cpp
+partition/uncoarsening/refinement/node_separators/greedy_ns_local_search.cpp
+partition/uncoarsening/refinement/node_separators/fm_ns_local_search.cpp
+partition/uncoarsening/refinement/node_separators/localized_fm_ns_local_search.cpp
+algorithms/cycle_search.cpp
+partition/uncoarsening/refinement/cycle_improvements/cycle_refinement.cpp
+partition/uncoarsening/refinement/tabu_search/tabu_search.cpp
+
+
+LIB = $(FOAM_EXT_LIBBIN)/libkahip

etc/makeFiles/kahip/options

@@ -0,0 +1,15 @@
+/*
+ * NOTE: make any changes to this file in etc/wmakeFiles/
+ * Must use -DNDEBUG to disable kahip debug mode.
+ * Using -DMODE_NODESEP is not strictly required for building the library.
+*/
+
+EXE_INC = \
+    ${c++LESSWARN} \
+    ${COMP_OPENMP} \
+    -DNDEBUG -DMODE_NODESEP \
+    -I$(KAHIP_LIB_SRC) \
+    -I$(KAHIP_LIB_SRC)/partition \
+    -I$(KAHIP_LIB_SRC)/partition/uncoarsening/refinement/quotient_graph_refinement/flow_refinement
+
+LIB_LIBS =

etc/makeFiles/libccmio/files

@@ -1,4 +1,4 @@
-/* NOTE: make any changes to this file in etc/wmakeFiles/ */
+/* NOTE: make any changes to this file in etc/makeFiles/ */
 
 libadf/ADF_interface.c
 libadf/ADF_internals.c

etc/makeFiles/libccmio/options

@@ -0,0 +1,3 @@
+/* NOTE: make any changes to this file in etc/makeFiles/ */
+
+/* EXE_INC = */

etc/makeFiles/scotch/Makefile.inc.OpenFOAM-Darwin.shlib

@@ -0,0 +1,45 @@
+#-------------------------------*- makefile -*---------------------------------
+# OpenFOAM notes:
+#
+# WM_CFLAGS, WM_LDFLAGS contain "-m32 -fPIC" etc
+# WM_LABEL_SIZE == 64 for 'long' instead of 'int' for OpenFOAM labels
+#
+# - compiled without pthread
+#
+# Normally set CCS, CCP by caller
+
+EXE         =
+LIB         = .dylib
+OBJ         = .o
+
+AR          = $(CC)
+ARFLAGS     = $(WM_CFLAGS) -dynamiclib -undefined dynamic_lookup -o
+CCS        ?= $(CC)
+CCP        ?= mpicc
+CCD         = $(CCP)
+CFLAGS      = $(WM_CFLAGS) -O3 \
+    -DCOMMON_FILE_COMPRESS_GZ \
+    -DCOMMON_RANDOM_FIXED_SEED \
+    -DSCOTCH_DETERMINISTIC \
+    -DSCOTCH_RENAME \
+    -Drestrict=__restrict
+
+# 32-bit vs. 64-bit labels
+ifeq ($(WM_LABEL_SIZE),64)
+CFLAGS     += -DINTSIZE64
+endif
+
+CLIBFLAGS   =
+LDFLAGS     = $(WM_LDFLAGS) -lz -lm
+
+MAKE        = make
+CP          = cp
+CAT         = cat
+LN          = ln
+MKDIR       = mkdir
+MV          = mv
+RANLIB      = echo
+LEX         = flex -Pscotchyy -olex.yy.c
+YACC        = bison -pscotchyy -y -b y
+
+#------------------------------------------------------------------------------

etc/makeFiles/scotch/Makefile.inc.OpenFOAM-Linux.shlib

@@ -20,6 +20,7 @@ CCD         = $(CCP)
 CFLAGS      = $(WM_CFLAGS) -O3 \
     -DCOMMON_FILE_COMPRESS_GZ \
     -DCOMMON_RANDOM_FIXED_SEED \
+    -DSCOTCH_DETERMINISTIC \
     -DSCOTCH_RENAME \
     -Drestrict=__restrict
 

etc/patches/ADIOS-1.11.0

@@ -1,12 +0,0 @@
---- ADIOS-1.11.0/src/core/adios_transform_methods.c.orig	2016-11-17 19:46:11.000000000 +0100
-+++ ADIOS-1.11.0/src/core/adios_transform_methods.c	2016-12-14 15:19:39.870832445 +0100
-@@ -7,6 +7,9 @@
-
- ADIOS_AVAILABLE_TRANSFORM_METHODS * adios_available_transform_methods()
- {
-+    /* Ensure the transforms are initialized before accessing */
-+    adios_transform_read_init();
-+
-     int i, n;
-     n = 0;
-     for (i = (int)adios_transform_none; i < num_adios_transform_types; i++) {

etc/patches/adios-1.11.0

@@ -1 +0,0 @@
-ADIOS-1.11.0

etc/patches/mkdiff-paraview-5.0.1

@@ -1,27 +0,0 @@
-#!/bin/sh
-
-# simple script to generate patches
-paraview=ParaView-5.0.1
-if [ "$#" -gt 0 ]
-then
-    paraview="${1%%/}"
-fi
-
-[ -d "$paraview" ] || {
-    echo "No directory '$paraview'" 1>&2
-    exit 2
-}
-
-for i in \
-    $paraview/VTK/CMake/vtkCompilerExtras.cmake \
-    $paraview/VTK/CMake/GenerateExportHeader.cmake \
-    $paraview/Qt/Components/CMakeLists.txt \
-    $paraview/CMake/generate_qhp.cmake \
-    $paraview/CMake/ParaViewMacros.cmake \
-    $paraview/CMake/generate_proxydocumentation.cmake \
-    ;
-do
-    diff -uw $i.orig $i
-done
-
-# -----------------------------------------------------------------------------

etc/patches/paraview-4.4.0

@@ -1,44 +0,0 @@
---- ParaView-4.4.0/VTK/IO/Geometry/vtkSTLReader.cxx.orig	2015-09-11 19:59:24.000000000 +0200
-+++ ParaView-4.4.0/VTK/IO/Geometry/vtkSTLReader.cxx	2016-06-19 12:59:50.769770143 +0200
-@@ -448,7 +448,7 @@
-           done = done || (fscanf(fp,"%s", line)==EOF);
-           }
-         }
--      if (!done)
-+      else if (!done)
-         {
-         done = (fgets(line, 255, fp) == 0);
-         lineCount++;
---- ParaView-5.0.1/VTK/CMake/vtkCompilerExtras.cmake.orig	2016-03-28 17:07:10.000000000 +0200
-+++ ParaView-5.0.1/VTK/CMake/vtkCompilerExtras.cmake	2016-06-11 15:10:14.820958942 +0200
-@@ -32,7 +32,7 @@
-     OUTPUT_VARIABLE _gcc_version_info
-     ERROR_VARIABLE _gcc_version_info)
-
--  string (REGEX MATCH "[345]\\.[0-9]\\.[0-9]*"
-+  string (REGEX MATCH "[3-9]\\.[0-9]\\.[0-9]*"
-     _gcc_version "${_gcc_version_info}")
-   if(NOT _gcc_version)
-     string (REGEX REPLACE ".*\\(GCC\\).*([34]\\.[0-9]).*" "\\1.0"
---- ParaView-5.0.1/VTK/CMake/GenerateExportHeader.cmake.orig	2016-03-28 17:07:10.000000000 +0200
-+++ ParaView-5.0.1/VTK/CMake/GenerateExportHeader.cmake	2016-06-11 15:12:16.344357746 +0200
-@@ -166,7 +166,7 @@
-     execute_process(COMMAND ${CMAKE_C_COMPILER} ARGS --version
-       OUTPUT_VARIABLE _gcc_version_info
-       ERROR_VARIABLE _gcc_version_info)
--    string(REGEX MATCH "[345]\\.[0-9]\\.[0-9]*"
-+    string(REGEX MATCH "[3-9]\\.[0-9]\\.[0-9]*"
-       _gcc_version "${_gcc_version_info}")
-     # gcc on mac just reports: "gcc (GCC) 3.3 20030304 ..." without the
-     # patch level, handle this here:
---- ParaView-5.0.1/Qt/Components/CMakeLists.txt.orig	2016-06-13 09:27:27.827849525 +0200
-+++ ParaView-5.0.1/Qt/Components/CMakeLists.txt	2016-06-13 09:29:28.599318445 +0200
-@@ -640,7 +640,7 @@
- #the pqSGExportStateWizard has subclasses that directly access
- #the UI file, and currently we don't have a clean way to break this hard
- #dependency, so for no we install this ui file.
--if(PARAVIEW_INSTALL_DEVELOPMENT_FILES)
-+if(PARAVIEW_INSTALL_DEVELOPMENT_FILES AND PARAVIEW_ENABLE_PYTHON)
-   install(FILES "${CMAKE_CURRENT_BINARY_DIR}/ui_pqExportStateWizard.h"
-           DESTINATION "${VTK_INSTALL_INCLUDE_DIR}")
- endif()

etc/patches/paraview-5.0.0

@@ -1 +0,0 @@
-paraview-5.0.1

etc/patches/paraview-5.0.1

@@ -1,221 +0,0 @@
---- ParaView-5.0.1/VTK/CMake/vtkCompilerExtras.cmake.orig	2016-03-28 17:07:10.000000000 +0200
-+++ ParaView-5.0.1/VTK/CMake/vtkCompilerExtras.cmake	2016-12-13 17:21:25.382720945 +0100
-@@ -32,7 +32,7 @@
-     OUTPUT_VARIABLE _gcc_version_info
-     ERROR_VARIABLE _gcc_version_info)
-
--  string (REGEX MATCH "[345]\\.[0-9]\\.[0-9]*"
-+  string (REGEX MATCH "[3-9]\\.[0-9]\\.[0-9]*"
-     _gcc_version "${_gcc_version_info}")
-   if(NOT _gcc_version)
-     string (REGEX REPLACE ".*\\(GCC\\).*([34]\\.[0-9]).*" "\\1.0"
---- ParaView-5.0.1/VTK/CMake/GenerateExportHeader.cmake.orig	2016-03-28 17:07:10.000000000 +0200
-+++ ParaView-5.0.1/VTK/CMake/GenerateExportHeader.cmake	2016-12-13 17:21:25.382720945 +0100
-@@ -166,7 +166,7 @@
-     execute_process(COMMAND ${CMAKE_C_COMPILER} ARGS --version
-       OUTPUT_VARIABLE _gcc_version_info
-       ERROR_VARIABLE _gcc_version_info)
--    string(REGEX MATCH "[345]\\.[0-9]\\.[0-9]*"
-+    string(REGEX MATCH "[3-9]\\.[0-9]\\.[0-9]*"
-       _gcc_version "${_gcc_version_info}")
-     # gcc on mac just reports: "gcc (GCC) 3.3 20030304 ..." without the
-     # patch level, handle this here:
---- ParaView-5.0.1/Qt/Components/CMakeLists.txt.orig	2016-03-28 17:07:03.000000000 +0200
-+++ ParaView-5.0.1/Qt/Components/CMakeLists.txt	2016-12-13 17:38:42.713553032 +0100
-@@ -656,7 +656,7 @@
- #the pqSGExportStateWizard has subclasses that directly access
- #the UI file, and currently we don't have a clean way to break this hard
- #dependency, so for no we install this ui file.
--if(PARAVIEW_INSTALL_DEVELOPMENT_FILES)
-+if(PARAVIEW_INSTALL_DEVELOPMENT_FILES AND PARAVIEW_ENABLE_PYTHON)
-   install(FILES "${CMAKE_CURRENT_BINARY_DIR}/ui_pqExportStateWizard.h"
-           DESTINATION "${VTK_INSTALL_INCLUDE_DIR}")
- endif()
---- ParaView-5.0.1/CMake/generate_qhp.cmake.orig	2016-03-28 17:06:22.000000000 +0200
-+++ ParaView-5.0.1/CMake/generate_qhp.cmake	2016-12-13 17:21:25.382720945 +0100
-@@ -44,7 +48,9 @@
-   message(FATAL_ERROR "Missing one of the required arguments!!")
- endif ()
-
--string (REPLACE "+" ";" file_patterns "${file_patterns}")
-+# Recover original ';' separated list.
-+string(REPLACE "_s" ";"  file_patterns "${file_patterns}")
-+string(REPLACE "_u" "_"  file_patterns "${file_patterns}")
-
- get_filename_component(working_dir "${output_file}" PATH)
-
---- ParaView-5.0.1/CMake/ParaViewMacros.cmake.orig	2016-03-28 17:07:03.000000000 +0200
-+++ ParaView-5.0.1/CMake/ParaViewMacros.cmake	2016-12-13 17:21:25.382720945 +0100
-@@ -219,15 +226,21 @@
-   set (xmls_string "")
-   foreach (xml ${xmls})
-     get_filename_component(xml "${xml}" ABSOLUTE)
--    set (xmls_string "${xmls_string}${xml}+")
-+    set (xmls_string "${xmls_string}${xml};")
-   endforeach()
-
-   set (gui_xmls_string "")
-   foreach (gui_xml ${gui_xmls})
-     get_filename_component(gui_xml "${gui_xml}" ABSOLUTE)
--    set (gui_xmls_string "${gui_xmls_string}${gui_xml}+")
-+    set (gui_xmls_string "${gui_xmls_string}${gui_xml};")
-   endforeach()
-
-+  # Escape ';' in lists
-+  string(REPLACE "_" "_u"  xmls_string "${xmls_string}")
-+  string(REPLACE ";" "_s"  xmls_string "${xmls_string}")
-+  string(REPLACE "_" "_u"  gui_xmls_string "${gui_xmls_string}")
-+  string(REPLACE ";" "_s"  gui_xmls_string "${gui_xmls_string}")
-+
-   set (all_xmls ${xmls} ${gui_xmls})
-   list (GET all_xmls 0 first_xml)
-   if (NOT first_xml)
---- ParaView-5.0.1/CMake/generate_proxydocumentation.cmake.orig	2016-03-28 17:06:22.000000000 +0200
-+++ ParaView-5.0.1/CMake/generate_proxydocumentation.cmake	2016-12-13 17:21:25.382720945 +0100
-@@ -21,8 +21,10 @@
- endif()
-
- # input_xmls is a pseudo-list. Convert it to a real CMake list.
--string(REPLACE "+" ";" input_xmls "${input_xmls}")
--string(REPLACE "+" ";" input_gui_xmls "${input_gui_xmls}")
-+string(REPLACE "_s" ";"  input_xmls "${input_xmls}")
-+string(REPLACE "_u" "_"  input_xmls "${input_xmls}")
-+string(REPLACE "_s" ";"  input_gui_xmls "${input_gui_xmls}")
-+string(REPLACE "_u" "_"  input_gui_xmls "${input_gui_xmls}")
-
- set (xslt_xml)
-
---- ParaView-5.0.1/VTK/CMake/vtkOpenGL.cmake.orig	2016-03-28 17:07:10.000000000 +0200
-+++ ParaView-5.0.1/VTK/CMake/vtkOpenGL.cmake	2017-01-19 10:23:19.170743269 +0100
-@@ -19,9 +19,11 @@
- # OSMesa logic for offscreen mesa rendering.
- option(VTK_OPENGL_HAS_OSMESA
-   "The OpenGL library being used supports off screen Mesa calls" OFF)
-+
- # EGL offscreen rendering
- option(VTK_USE_OFFSCREEN_EGL
-   "Use EGL for OpenGL client API for offscreen rendering." OFF)
-+
- set(VTK_EGL_DEVICE_INDEX 0 CACHE STRING
-   "Index of the EGL device (graphics card) to use.")
-
-@@ -33,21 +35,26 @@
- endif()
-
- option(VTK_USE_OFFSCREEN "Use off screen calls by default" OFF)
-+
- unset(VTK_CAN_DO_OFFSCREEN)
-+unset(VTK_CAN_DO_ONSCREEN)
-+
- if(VTK_OPENGL_HAS_OSMESA OR WIN32 OR VTK_USE_OFFSCREEN_EGL)
-   set(VTK_CAN_DO_OFFSCREEN 1)
- endif()
-+
- if(VTK_USE_X OR VTK_USE_COCOA OR WIN32 OR ANDROID OR APPLE_IOS)
--  set(VTK_USE_OSMESA FALSE)
-+  set(VTK_USE_OSMESA ${VTK_OPENGL_HAS_OSMESA})
-   if (VTK_USE_OFFSCREEN_EGL)
-     message(FATAL_ERROR "VTK_USE_OFFSCREEN_EGL set together with one of ("
-       "VTK_USE_X, VTK_USE_COCOA, WIN32, ANDROID OR APPLE_IOS). "
-       "You cannot use both offscreen and one of the listed windowing systems.")
-   endif()
-+  set(VTK_CAN_DO_ONSCREEN 1)
- elseif(VTK_USE_OFFSCREEN_EGL)
-   set(VTK_USE_OSMESA FALSE)
- else()
--  set(VTK_USE_OSMESA TRUE)
-+  set(VTK_USE_OSMESA ${VTK_OPENGL_HAS_OSMESA})
- endif()
-
- mark_as_advanced(VTK_USE_X VTK_OPENGL_HAS_OSMESA VTK_USE_OFFSCREEN_EGL
-@@ -56,10 +63,17 @@
- if(VTK_USE_OSMESA)
-   find_package(OSMesa REQUIRED)
-   include_directories(SYSTEM ${OSMESA_INCLUDE_DIR})
--elseif(VTK_USE_OFFSCREEN_EGL)
-+endif()
-+
-+if(VTK_USE_OFFSCREEN_EGL)
-     find_package(EGL REQUIRED)
-     include_directories(SYSTEM ${EGL_INCLUDE_DIR})
--else()
-+endif()
-+
-+if(VTK_CAN_DO_ONSCREEN)
-+  # OpenGL libraries are explicity needed if windowing system-based API is being
-+  # used. Otherwise, if only doing OFFSCREEN, the GL API is provided by the
-+  # offscreen library be it EGL or OSMESA.
-   find_package(OpenGL REQUIRED)
-   include_directories(SYSTEM ${OPENGL_INCLUDE_DIR})
-   if(APPLE)
-@@ -83,9 +97,11 @@
- function(vtk_opengl_link target)
-   if(VTK_USE_OSMESA)
-     vtk_module_link_libraries(${target} LINK_PRIVATE ${OSMESA_LIBRARY})
--  elseif(VTK_USE_OFFSCREEN_EGL)
-+  endif()
-+  if(VTK_USE_OFFSCREEN_EGL)
-     vtk_module_link_libraries(${target} LINK_PRIVATE ${EGL_LIBRARIES})
--  else()
-+  endif()
-+  if(VTK_CAN_DO_ONSCREEN)
-     vtk_module_link_libraries(${target} LINK_PRIVATE ${OPENGL_LIBRARIES})
-   endif()
- endfunction()
---- ParaView-5.0.1/VTK/Rendering/OpenGL2/vtkXOpenGLRenderWindow.cxx.orig	2016-03-28 17:07:10.000000000 +0200
-+++ ParaView-5.0.1/VTK/Rendering/OpenGL2/vtkXOpenGLRenderWindow.cxx	2017-01-19 15:24:21.783214877 +0100
-@@ -30,10 +30,25 @@
- typedef ptrdiff_t GLsizeiptr;
- #include "GL/glx.h"
-
-+
-+#ifndef GLAPI
-+#define GLAPI extern
-+#endif
-+
-+#ifndef GLAPIENTRY
-+#define GLAPIENTRY
-+#endif
-+
-+#ifndef APIENTRY
-+#define APIENTRY GLAPIENTRY
-+#endif
-+
- #include "vtkToolkits.h"
-
- #ifdef VTK_USE_OSMESA
- #include <GL/osmesa.h>
-+
-+typedef OSMesaContext GLAPIENTRY (*OSMesaCreateContextAttribs_func)( const int *attribList, OSMesaContext sharelist );
- #endif
-
- #include "vtkCommand.h"
-@@ -757,6 +772,28 @@
-       this->Size[1] = height;
-       this->OwnWindow = 1;
-       }
-+
-+#if (OSMESA_MAJOR_VERSION * 100 + OSMESA_MINOR_VERSION >= 1102) && defined(OSMESA_CONTEXT_MAJOR_VERSION)
-+    static const int attribs[] = {
-+       OSMESA_FORMAT, OSMESA_RGBA,
-+       OSMESA_DEPTH_BITS, 32,
-+       OSMESA_STENCIL_BITS, 0,
-+       OSMESA_ACCUM_BITS, 0,
-+       OSMESA_PROFILE, OSMESA_CORE_PROFILE,
-+       OSMESA_CONTEXT_MAJOR_VERSION, 3,
-+       OSMESA_CONTEXT_MINOR_VERSION, 2,
-+       0 };
-+
-+    OSMesaCreateContextAttribs_func OSMesaCreateContextAttribs =
-+       (OSMesaCreateContextAttribs_func)
-+       OSMesaGetProcAddress("OSMesaCreateContextAttribs");
-+
-+    if (OSMesaCreateContextAttribs != NULL)
-+    {
-+      this->Internal->OffScreenContextId = OSMesaCreateContextAttribs(attribs, NULL);
-+    }
-+#endif
-+    // if we still have no context fall back to the generic signature
-     if (!this->Internal->OffScreenContextId)
-       {
-       this->Internal->OffScreenContextId = OSMesaCreateContext(GL_RGBA, NULL);

etc/patches/paraview-5.1.0

@@ -1 +0,0 @@
-paraview-5.1.2

etc/patches/paraview-5.1.2

@@ -1,65 +0,0 @@
---- ParaView-5.1.2/Qt/Components/CMakeLists.txt.orig	2016-07-26 21:52:16.000000000 +0200
-+++ ParaView-5.1.2/Qt/Components/CMakeLists.txt	2016-12-13 17:38:42.713553032 +0100
-@@ -591,7 +591,7 @@
- #the pqSGExportStateWizard has subclasses that directly access
- #the UI file, and currently we don't have a clean way to break this hard
- #dependency, so for no we install this ui file.
--if(PARAVIEW_INSTALL_DEVELOPMENT_FILES)
-+if(PARAVIEW_INSTALL_DEVELOPMENT_FILES AND PARAVIEW_ENABLE_PYTHON)
-   install(FILES "${CMAKE_CURRENT_BINARY_DIR}/ui_pqExportStateWizard.h"
-           DESTINATION "${VTK_INSTALL_INCLUDE_DIR}")
- endif()
---- ParaView-5.1.2/CMake/generate_qhp.cmake.orig	2016-03-28 17:06:22.000000000 +0200
-+++ ParaView-5.1.2/CMake/generate_qhp.cmake	2016-12-13 17:21:25.382720945 +0100
-@@ -44,7 +48,9 @@
-   message(FATAL_ERROR "Missing one of the required arguments!!")
- endif ()
-
--string (REPLACE "+" ";" file_patterns "${file_patterns}")
-+# Recover original ';' separated list.
-+string(REPLACE "_s" ";"  file_patterns "${file_patterns}")
-+string(REPLACE "_u" "_"  file_patterns "${file_patterns}")
-
- get_filename_component(working_dir "${output_file}" PATH)
-
---- ParaView-5.1.2/CMake/ParaViewMacros.cmake.orig	2016-03-28 17:07:03.000000000 +0200
-+++ ParaView-5.1.2/CMake/ParaViewMacros.cmake	2016-12-13 17:21:25.382720945 +0100
-@@ -219,15 +226,21 @@
-   set (xmls_string "")
-   foreach (xml ${xmls})
-     get_filename_component(xml "${xml}" ABSOLUTE)
--    set (xmls_string "${xmls_string}${xml}+")
-+    set (xmls_string "${xmls_string}${xml};")
-   endforeach()
-
-   set (gui_xmls_string "")
-   foreach (gui_xml ${gui_xmls})
-     get_filename_component(gui_xml "${gui_xml}" ABSOLUTE)
--    set (gui_xmls_string "${gui_xmls_string}${gui_xml}+")
-+    set (gui_xmls_string "${gui_xmls_string}${gui_xml};")
-   endforeach()
-
-+  # Escape ';' in lists
-+  string(REPLACE "_" "_u"  xmls_string "${xmls_string}")
-+  string(REPLACE ";" "_s"  xmls_string "${xmls_string}")
-+  string(REPLACE "_" "_u"  gui_xmls_string "${gui_xmls_string}")
-+  string(REPLACE ";" "_s"  gui_xmls_string "${gui_xmls_string}")
-+
-   set (all_xmls ${xmls} ${gui_xmls})
-   list (GET all_xmls 0 first_xml)
-   if (NOT first_xml)
---- ParaView-5.1.2/CMake/generate_proxydocumentation.cmake.orig	2016-03-28 17:06:22.000000000 +0200
-+++ ParaView-5.1.2/CMake/generate_proxydocumentation.cmake	2016-12-13 17:21:25.382720945 +0100
-@@ -21,8 +21,10 @@
- endif()
-
- # input_xmls is a pseudo-list. Convert it to a real CMake list.
--string(REPLACE "+" ";" input_xmls "${input_xmls}")
--string(REPLACE "+" ";" input_gui_xmls "${input_gui_xmls}")
-+string(REPLACE "_s" ";"  input_xmls "${input_xmls}")
-+string(REPLACE "_u" "_"  input_xmls "${input_xmls}")
-+string(REPLACE "_s" ";"  input_gui_xmls "${input_gui_xmls}")
-+string(REPLACE "_u" "_"  input_gui_xmls "${input_gui_xmls}")
-
- set (xslt_xml)
-

etc/patches/paraview-5.5.1

@@ -0,0 +1 @@
+paraview-5.5.2

etc/patches/paraview-5.5.2

@@ -0,0 +1,655 @@
+--- ParaView-v5.5.0/VTK/ThirdParty/vtkm/vtk-m/CMake/VTKmDetermineVersion.cmake.orig	2018-04-06 22:03:33.000000000 +0200
++++ ParaView-v5.5.0/VTK/ThirdParty/vtkm/vtk-m/CMake/VTKmDetermineVersion.cmake	2018-04-23 12:00:23.708544206 +0200
+@@ -51,6 +51,8 @@
+         ERROR_QUIET
+         OUTPUT_STRIP_TRAILING_WHITESPACE
+         ERROR_STRIP_TRAILING_WHITESPACE)
++    else()
++      set(output)
+     endif()
+   else()
+     set(result 0)
+@@ -75,7 +77,7 @@
+ 
+ # Extracts components from a version string. See determine_version() for usage.
+ function(extract_version_components version_string var_prefix)
+-  string(REGEX MATCH "([0-9]+)\\.([0-9]+)\\.([0-9]+)[-]*(.*)"
++  string(REGEX MATCH "^([0-9]+)\\.([0-9]+)\\.([0-9]+)[-]*(.*)$"
+     version_matches "${version_string}")
+   if(CMAKE_MATCH_0)
+     set(full ${CMAKE_MATCH_0})
+--- ParaView-v5.5.0/CoProcessing/Catalyst/vtkCPProcessor.cxx.orig	2018-04-06 22:03:33.000000000 +0200
++++ ParaView-v5.5.0/CoProcessing/Catalyst/vtkCPProcessor.cxx	2018-05-11 12:02:26.894772713 +0200
+@@ -38,6 +38,7 @@
+ #include "vtkStringArray.h"
+ 
+ #include <list>
++#include <vtksys/SystemTools.hxx>
+ 
+ struct vtkCPProcessorInternals
+ {
+@@ -47,12 +48,13 @@
+ };
+ 
+ vtkStandardNewMacro(vtkCPProcessor);
+-vtkMultiProcessController* vtkCPProcessor::Controller = NULL;
++vtkMultiProcessController* vtkCPProcessor::Controller = nullptr;
+ //----------------------------------------------------------------------------
+ vtkCPProcessor::vtkCPProcessor()
+ {
+   this->Internal = new vtkCPProcessorInternals;
+-  this->InitializationHelper = NULL;
++  this->InitializationHelper = nullptr;
++  this->WorkingDirectory = nullptr;
+ }
+ 
+ //----------------------------------------------------------------------------
+@@ -61,14 +63,15 @@
+   if (this->Internal)
+   {
+     delete this->Internal;
+-    this->Internal = NULL;
++    this->Internal = nullptr;
+   }
+ 
+   if (this->InitializationHelper)
+   {
+     this->InitializationHelper->Delete();
+-    this->InitializationHelper = NULL;
++    this->InitializationHelper = nullptr;
+   }
++  this->SetWorkingDirectory(nullptr);
+ }
+ 
+ //----------------------------------------------------------------------------
+@@ -95,7 +98,7 @@
+ {
+   if (which < 0 || which >= this->GetNumberOfPipelines())
+   {
+-    return NULL;
++    return nullptr;
+   }
+   int counter = 0;
+   vtkCPProcessorInternals::PipelineListIterator iter = this->Internal->Pipelines.begin();
+@@ -108,7 +111,7 @@
+     counter++;
+     iter++;
+   }
+-  return NULL;
++  return nullptr;
+ }
+ 
+ //----------------------------------------------------------------------------
+@@ -130,17 +133,41 @@
+ }
+ 
+ //----------------------------------------------------------------------------
+-int vtkCPProcessor::Initialize()
++int vtkCPProcessor::Initialize(const char* workingDirectory)
+ {
+-  if (this->InitializationHelper == NULL)
++  if (this->InitializationHelper == nullptr)
+   {
+     this->InitializationHelper = this->NewInitializationHelper();
+   }
++  // make sure the directory exists here so that we only do it once
++  if (workingDirectory)
++  {
++    vtkMultiProcessController* controller = vtkMultiProcessController::GetGlobalController();
++    int success = 1;
++    if (controller == nullptr || controller->GetLocalProcessId() == 0)
++    {
++      success = vtksys::SystemTools::MakeDirectory(workingDirectory) == true ? 1 : 0;
++      if (success == 0)
++      {
++        vtkWarningMacro("Could not make "
++          << workingDirectory << " directory. "
++          << "Results will be generated in current working directory instead.");
++      }
++    }
++    if (controller)
++    {
++      controller->Broadcast(&success, 1, 0);
++    }
++    if (success)
++    {
++      this->SetWorkingDirectory(workingDirectory);
++    }
++  }
+   return 1;
+ }
+ 
+ //----------------------------------------------------------------------------
+-int vtkCPProcessor::Initialize(vtkMPICommunicatorOpaqueComm& comm)
++int vtkCPProcessor::Initialize(vtkMPICommunicatorOpaqueComm& comm, const char* workingDirectory)
+ {
+ #ifdef PARAVIEW_USE_MPI
+   if (vtkCPProcessor::Controller)
+@@ -148,7 +175,7 @@
+     vtkErrorMacro("Can only initialize with a communicator once per process.");
+     return 0;
+   }
+-  if (this->InitializationHelper == NULL)
++  if (this->InitializationHelper == nullptr)
+   {
+     vtkMPICommunicator* communicator = vtkMPICommunicator::New();
+     communicator->InitializeExternal(&comm);
+@@ -157,12 +184,12 @@
+     this->Controller = controller;
+     this->Controller->SetGlobalController(controller);
+     communicator->Delete();
+-    return this->Initialize();
++    return this->Initialize(workingDirectory);
+   }
+   return 1;
+ #else
+   static_cast<void>(&comm); // get rid of variable not used warning
+-  return this->Initialize();
++  return this->Initialize(workingDirectory);
+ #endif
+ }
+ 
+@@ -225,6 +252,13 @@
+       input->GetFieldData()->AddArray(catalystChannel);
+     }
+   }
++
++  std::string originalWorkingDirectory;
++  if (this->WorkingDirectory)
++  {
++    originalWorkingDirectory = vtksys::SystemTools::GetCurrentWorkingDirectory();
++    vtksys::SystemTools::ChangeDirectory(this->WorkingDirectory);
++  }
+   for (vtkCPProcessorInternals::PipelineListIterator iter = this->Internal->Pipelines.begin();
+        iter != this->Internal->Pipelines.end(); iter++)
+   {
+@@ -248,6 +282,10 @@
+       }
+     }
+   }
++  if (originalWorkingDirectory.empty() == false)
++  {
++    vtksys::SystemTools::ChangeDirectory(originalWorkingDirectory);
++  }
+   // we want to reset everything here to make sure that new information
+   // is properly passed in the next time.
+   dataDescription->ResetAll();
+@@ -259,7 +297,7 @@
+ {
+   if (this->Controller)
+   {
+-    this->Controller->SetGlobalController(NULL);
++    this->Controller->SetGlobalController(nullptr);
+     this->Controller->Finalize(1);
+     this->Controller->Delete();
+   }
+--- ParaView-v5.5.0/CoProcessing/Catalyst/vtkCPProcessor.h.orig	2018-04-06 22:03:33.000000000 +0200
++++ ParaView-v5.5.0/CoProcessing/Catalyst/vtkCPProcessor.h	2018-05-11 12:02:26.894772713 +0200
+@@ -76,14 +76,16 @@
+   virtual void RemoveAllPipelines();
+ 
+   /// Initialize the co-processor. Returns 1 if successful and 0
+-  /// otherwise.
+   /// otherwise. If Catalyst is built with MPI then Initialize()
+   /// can also be called with a specific MPI communicator if
+   /// MPI_COMM_WORLD isn't the proper one. Catalyst is initialized
+-  /// to use MPI_COMM_WORLD by default.
+-  virtual int Initialize();
++  /// to use MPI_COMM_WORLD by default. Both methods have an optional
++  /// workingDirectory argument which will set *WorkingDirectory* so
++  /// that files will be put relative to this directory.
++  virtual int Initialize(const char* workingDirectory = nullptr);
+ #ifndef __WRAP__
+-  virtual int Initialize(vtkMPICommunicatorOpaqueComm& comm);
++  virtual int Initialize(
++    vtkMPICommunicatorOpaqueComm& comm, const char* workingDirectory = nullptr);
+ #endif
+ 
+   /// The Catalyst input field data string array name. This array will
+@@ -111,6 +113,13 @@
+   /// implementation an opportunity to clean up, before it is destroyed.
+   virtual int Finalize();
+ 
++  /// Get the current working directory for outputting Catalyst files.
++  /// If not set then Catalyst output files will be relative to the
++  /// current working directory. This will not affect where Catalyst
++  /// looks for Python scripts. *WorkingDirectory* gets set through
++  /// the *Initialize()* methods.
++  vtkGetStringMacro(WorkingDirectory);
++
+ protected:
+   vtkCPProcessor();
+   virtual ~vtkCPProcessor();
+@@ -118,6 +127,11 @@
+   /// Create a new instance of the InitializationHelper.
+   virtual vtkObject* NewInitializationHelper();
+ 
++  /// Set the current working directory for outputting Catalyst files.
++  /// This is a protected method since simulation code adaptors should
++  /// set this through the *Initialize()* methods.
++  vtkSetStringMacro(WorkingDirectory);
++
+ private:
+   vtkCPProcessor(const vtkCPProcessor&) = delete;
+   void operator=(const vtkCPProcessor&) = delete;
+@@ -125,6 +139,7 @@
+   vtkCPProcessorInternals* Internal;
+   vtkObject* InitializationHelper;
+   static vtkMultiProcessController* Controller;
++  char* WorkingDirectory;
+ };
+ 
+ #endif
+--- ParaView-v5.5.0/CoProcessing/Catalyst/vtkCPXMLPWriterPipeline.cxx.orig	2018-04-06 22:03:33.000000000 +0200
++++ ParaView-v5.5.0/CoProcessing/Catalyst/vtkCPXMLPWriterPipeline.cxx	2018-05-11 12:02:26.894772713 +0200
+@@ -31,6 +31,7 @@
+ #include <vtkSmartPointer.h>
+ #include <vtkUnstructuredGrid.h>
+ 
++#include <algorithm>
+ #include <sstream>
+ #include <string>
+ 
+@@ -174,7 +175,7 @@
+ 
+   for (unsigned int i = 0; i < dataDescription->GetNumberOfInputDescriptions(); i++)
+   {
+-    const char* inputName = dataDescription->GetInputDescriptionName(i);
++    std::string inputName = dataDescription->GetInputDescriptionName(i);
+     vtkCPInputDataDescription* idd = dataDescription->GetInputDescription(i);
+     vtkDataObject* grid = idd->GetGrid();
+     if (grid == nullptr)
+@@ -206,6 +207,8 @@
+         vtkSMStringVectorProperty* fileName =
+           vtkSMStringVectorProperty::SafeDownCast(writer->GetProperty("FileName"));
+ 
++        // If we have a / in the channel name we take it out of the filename we're going to write to
++        inputName.erase(std::remove(inputName.begin(), inputName.end(), '/'), inputName.end());
+         std::ostringstream o;
+         if (this->Path.empty() == false)
+         {
+--- ParaView-v5.5.0/Wrapping/Python/paraview/coprocessing.py.orig	2018-04-06 22:03:33.000000000 +0200
++++ ParaView-v5.5.0/Wrapping/Python/paraview/coprocessing.py	2018-05-11 12:02:27.038772408 +0200
+@@ -11,22 +11,12 @@
+ from paraview.vtk.vtkPVVTKExtensionsCore import *
+ import math
+ 
+-# -----------------------------------------------------------------------------
+-def IsInModulo(timestep, frequencyArray):
+-    """
+-    Return True if the given timestep is in one of the provided frequency.
+-    This can be interpreted as follow::
+-
+-        isFM = IsInModulo(timestep, [2,3,7])
+-
+-    is similar to::
++# If the user created a filename in a location that doesn't exist by default we'll
++# make the directory for them. This can be changed though by setting createDirectoriesIfNeeded
++# to False.
++createDirectoriesIfNeeded = True
+ 
+-        isFM = (timestep % 2 == 0) or (timestep % 3 == 0) or (timestep % 7 == 0)
+-    """
+-    for frequency in frequencyArray:
+-        if frequency > 0 and (timestep % frequency == 0):
+-            return True
+-    return False
++# -----------------------------------------------------------------------------
+ 
+ class CoProcessor(object):
+     """Base class for co-processing Pipelines.
+@@ -68,6 +58,9 @@
+         self.__CinemaTracks = {}
+         self.__InitialFrequencies = {}
+         self.__PrintEnsightFormatString = False
++        self.__TimeStepToStartOutputAt=0
++        self.__ForceOutputAtFirstCall=False
++        self.__FirstTimeStepIndex = None
+ 
+     def SetPrintEnsightFormatString(self, enable):
+         """If outputting ExodusII files with the purpose of reading them into
+@@ -87,6 +80,17 @@
+                  "Incorrect argument type: %s, must be a dict" % type(frequencies))
+         self.__InitialFrequencies = frequencies
+ 
++    def SetInitialOutputOptions(self, timeStepToStartOutputAt, forceOutputAtFirstCall):
++        """Set the frequencies at which the pipeline needs to be updated.
++           Typically, this is called by the subclass once it has determined what
++           timesteps co-processing will be needed to be done.
++           frequencies is a map, with key->string name of for the simulation
++           input, and value is a list of frequencies.
++           """
++
++        self.__TimeStepToStartOutputAt=timeStepToStartOutputAt
++        self.__ForceOutputAtFirstCall=forceOutputAtFirstCall
++
+     def EnableLiveVisualization(self, enable, frequency = 1):
+         """Call this method to enable live-visualization. When enabled,
+         DoLiveVisualization() will communicate with ParaView server if possible
+@@ -115,7 +119,7 @@
+         # if this is a time step to do live then all of the inputs
+         # must be made available. note that we want the pipeline built
+         # before we do the actual first live connection.
+-        if self.__EnableLiveVisualization and timestep % self.__LiveVisualizationFrequency == 0 \
++        if self.__EnableLiveVisualization and self.NeedToOutput(timestep, self.__LiveVisualizationFrequency) \
+            and self.__LiveVisualizationLink:
+             if self.__LiveVisualizationLink.Initialize(servermanager.ActiveConnection.Session.GetSessionProxyManager()):
+                 num_inputs = datadescription.GetNumberOfInputDescriptions()
+@@ -132,13 +136,13 @@
+         # hasn't been set up yet). If we don't have live enabled
+         # we know that the output frequencies aren't changed and can
+         # just use the initial frequencies.
+-        if self.__InitialFrequencies or not self.__EnableLiveVisualization:
++        if self.__ForceOutputAtFirstCall or self.__InitialFrequencies or not self.__EnableLiveVisualization:
+             num_inputs = datadescription.GetNumberOfInputDescriptions()
+             for cc in range(num_inputs):
+                 input_name = datadescription.GetInputDescriptionName(cc)
+ 
+                 freqs = self.__InitialFrequencies.get(input_name, [])
+-                if self.__EnableLiveVisualization or ( self and IsInModulo(timestep, freqs) ):
++                if self.__EnableLiveVisualization or ( self and self.IsInModulo(timestep, freqs) ):
+                         datadescription.GetInputDescription(cc).AllFieldsOn()
+                         datadescription.GetInputDescription(cc).GenerateMeshOn()
+         else:
+@@ -149,15 +153,14 @@
+             for writer in self.__WritersList:
+                 frequency = writer.parameters.GetProperty(
+                     "WriteFrequency").GetElement(0)
+-                if (timestep % frequency) == 0 or \
+-                   datadescription.GetForceOutput() == True:
++                if self.NeedToOutput(timestep, frequency) or datadescription.GetForceOutput() == True:
+                     writerinputs = cpstate.locate_simulation_inputs(writer)
+                     for writerinput in writerinputs:
+                         datadescription.GetInputDescriptionByName(writerinput).AllFieldsOn()
+                         datadescription.GetInputDescriptionByName(writerinput).GenerateMeshOn()
+ 
+             for view in self.__ViewsList:
+-                if (view.cpFrequency and timestep % view.cpFrequency == 0) or \
++                if (view.cpFrequency and self.NeedToOutput(timestep, view.cpFrequency)) or \
+                    datadescription.GetForceOutput() == True:
+                     viewinputs = cpstate.locate_simulation_inputs_for_view(view)
+                     for viewinput in viewinputs:
+@@ -192,8 +195,7 @@
+         for writer in self.__WritersList:
+             frequency = writer.parameters.GetProperty(
+                 "WriteFrequency").GetElement(0)
+-            if (timestep % frequency) == 0 or \
+-                    datadescription.GetForceOutput() == True:
++            if self.NeedToOutput(timestep, frequency) or datadescription.GetForceOutput() == True:
+                 fileName = writer.parameters.GetProperty("FileName").GetElement(0)
+                 paddingamount = writer.parameters.GetProperty("PaddingAmount").GetElement(0)
+                 helperName = writer.GetXMLName()
+@@ -203,6 +205,23 @@
+                 else:
+                     ts = str(timestep).rjust(paddingamount, '0')
+                     writer.FileName = fileName.replace("%t", ts)
++                if '/' in writer.FileName and createDirectoriesIfNeeded:
++                    oktowrite = [1.]
++                    import vtk
++                    comm = vtk.vtkMultiProcessController.GetGlobalController()
++                    if comm.GetLocalProcessId() == 0:
++                        import os
++                        newDir = writer.FileName[0:writer.FileName.rfind('/')]
++                        try:
++                            os.makedirs(newDir)
++                        except OSError:
++                            if not os.path.isdir(newDir):
++                                print ("ERROR: Cannot make directory for", writer.FileName, ". No data will be written.")
++                                oktowrite[0] = 0.
++                    comm.Broadcast(oktowrite, 1, 0)
++                    if oktowrite[0] == 0:
++                        # we can't make the directory so no reason to update the pipeline
++                        return
+                 writer.UpdatePipeline(datadescription.GetTime())
+ 
+     def WriteImages(self, datadescription, rescale_lookuptable=False,
+@@ -240,7 +259,7 @@
+ 
+         cinema_dirs = []
+         for view in self.__ViewsList:
+-            if (view.cpFrequency and timestep % view.cpFrequency == 0) or \
++            if (view.cpFrequency and self.NeedToOutput(timestep, view.cpFrequency)) or \
+                datadescription.GetForceOutput() == True:
+                 fname = view.cpFileName
+                 ts = str(timestep).rjust(padding_amount, '0')
+@@ -267,6 +286,24 @@
+                     if dirname:
+                         cinema_dirs.append(dirname)
+                 else:
++                    if '/' in fname and createDirectoriesIfNeeded:
++                        oktowrite = [1.]
++                        import vtk
++                        comm = vtk.vtkMultiProcessController.GetGlobalController()
++                        if comm.GetLocalProcessId() == 0:
++                            import os
++                            newDir = fname[0:fname.rfind('/')]
++                            try:
++                                os.makedirs(newDir)
++                            except OSError:
++                                if not os.path.isdir(newDir):
++                                    print ("ERROR: Cannot make directory for", fname, ". No image will be output.")
++                                    oktowrite[0] = 0.
++                        comm.Broadcast(oktowrite, 1, 0)
++                        if oktowrite[0] == 0:
++                            # we can't make the directory so no reason to update the pipeline
++                            return
++
+                     if image_quality is None and fname.endswith('png'):
+                         # for png quality = 0 means no compression. compression can be a potentially
+                         # very costly serial operation on process 0
+@@ -307,7 +344,7 @@
+ 
+ 
+         timeStep = datadescription.GetTimeStep()
+-        if self.__EnableLiveVisualization and timeStep % self.__LiveVisualizationFrequency == 0:
++        if self.__EnableLiveVisualization and self.NeedToOutput(timeStep, self.__LiveVisualizationFrequency):
+             if not self.__LiveVisualizationLink.Initialize(servermanager.ActiveConnection.Session.GetSessionProxyManager()):
+                 return
+ 
+@@ -412,7 +449,7 @@
+         """
+         controller = servermanager.ParaViewPipelineController()
+         # assume that a client only proxy with the same name as a writer
+-        # is available in "insitu_writer_paramters"
++        # is available in "insitu_writer_parameters"
+ 
+         # Since coprocessor sometimes pass writer as a custom object and not
+         # a proxy, we need to handle that. Just creating any arbitrary writer
+@@ -666,3 +703,42 @@
+         #restore what we showed
+         pv_introspect.restore_visibility(pxystate)
+         return os.path.basename(vfname)
++
++    def IsInModulo(self, timestep, frequencies):
++        """
++        Return True if the given timestep is in one of the provided frequency.
++        This can be interpreted as follow::
++
++        isFM = IsInModulo(timestep-timeStepToStartOutputAt, [2,3,7])
++
++        is similar to::
++
++        isFM = (timestep-timeStepToStartOutputAt % 2 == 0) or (timestep-timeStepToStartOutputAt % 3 == 0) or (timestep-timeStepToStartOutputAt % 7 == 0)
++
++        The timeStepToStartOutputAt is the first timestep that will potentially be output.
++        """
++        if timestep < self.__TimeStepToStartOutputAt and not self.__ForceOutputAtFirstCall:
++            return False
++        for frequency in frequencies:
++            if frequency > 0 and self.NeedToOutput(timestep, frequency):
++                return True
++
++        return False
++
++
++    def NeedToOutput(self, timestep, frequency):
++        """
++        Return True if we need to output based on the input timestep and frequency. Checks based
++        __FirstTimeStepIndex, __FirstTimeStepIndex, __ForceOutputAtFirstCall and __TimeStepToStartOutputAt
++        member variables.
++        """
++        if self.__FirstTimeStepIndex == None:
++            self.__FirstTimeStepIndex = timestep
++
++        if self.__ForceOutputAtFirstCall and self.__FirstTimeStepIndex == timestep:
++            return True
++
++        if self.__TimeStepToStartOutputAt <= timestep and (timestep-self.__TimeStepToStartOutputAt) % frequency == 0:
++            return True
++
++        return False
+--- ParaView-v5.5.1/ParaViewCore/ServerManager/SMApplication/Resources/readers.xml.orig	2018-06-01 21:23:15.000000000 +0200
++++ ParaView-v5.5.1/ParaViewCore/ServerManager/SMApplication/Resources/readers.xml	2018-06-19 20:50:55.128914062 +0200
+@@ -3769,7 +3769,7 @@
+         <Documentation>Available timestep values.</Documentation>
+       </DoubleVectorProperty>
+       <Hints>
+-        <ReaderFactory extensions="vtm vtmb"
++        <ReaderFactory extensions="vtm vtm.series vtmb vtmb.series"
+                        file_description="VTK MultiBlock Data Files" />
+       </Hints>
+       <!-- end of XMLMultiBlockDataReader -->
+@@ -3824,7 +3824,7 @@
+         <Documentation>Available timestep values.</Documentation>
+       </DoubleVectorProperty>
+       <Hints>
+-        <ReaderFactory extensions="vthb vth"
++        <ReaderFactory extensions="vthb vthb.series vth vth.series"
+                        file_description="VTK Hierarchical Box Data Files" />
+       </Hints>
+       <!-- end of XMLUniformGridAMRReader -->
+@@ -3933,7 +3933,7 @@
+         <Documentation>Available timestep values.</Documentation>
+       </DoubleVectorProperty>
+       <Hints>
+-        <ReaderFactory extensions="vtp"
++        <ReaderFactory extensions="vtp vtp.series"
+                        file_description="VTK PolyData Files" />
+       </Hints>
+     </SourceProxy>
+@@ -3990,7 +3990,7 @@
+         <Documentation>Available timestep values.</Documentation>
+       </DoubleVectorProperty>
+       <Hints>
+-        <ReaderFactory extensions="vtt"
++        <ReaderFactory extensions="vtt vtt.series"
+                        file_description="VTK Table Files" />
+       </Hints>
+     </SourceProxy>
+@@ -4050,7 +4050,7 @@
+         <Documentation>Available timestep values.</Documentation>
+       </DoubleVectorProperty>
+       <Hints>
+-        <ReaderFactory extensions="vtu"
++        <ReaderFactory extensions="vtu vtu.series"
+                        file_description="VTK UnstructuredGrid Files" />
+       </Hints>
+     </SourceProxy>
+@@ -4108,7 +4108,7 @@
+         <Documentation>Available timestep values.</Documentation>
+       </DoubleVectorProperty>
+       <Hints>
+-        <ReaderFactory extensions="vti"
++        <ReaderFactory extensions="vti vti.series"
+                        file_description="VTK ImageData Files" />
+       </Hints>
+     </SourceProxy>
+@@ -4166,7 +4166,7 @@
+         <Documentation>Available timestep values.</Documentation>
+       </DoubleVectorProperty>
+       <Hints>
+-        <ReaderFactory extensions="vts"
++        <ReaderFactory extensions="vts vts.series"
+                        file_description="VTK StructuredGrid Files" />
+       </Hints>
+     </SourceProxy>
+@@ -4224,7 +4224,7 @@
+         <Documentation>Available timestep values.</Documentation>
+       </DoubleVectorProperty>
+       <Hints>
+-        <ReaderFactory extensions="vtr"
++        <ReaderFactory extensions="vtr vtr.series"
+                        file_description="VTK RectilinearGrid Files" />
+       </Hints>
+     </SourceProxy>
+@@ -4284,7 +4284,7 @@
+         <Documentation>Available timestep values.</Documentation>
+       </DoubleVectorProperty>
+       <Hints>
+-        <ReaderFactory extensions="pvtp"
++        <ReaderFactory extensions="pvtp pvtp.series"
+                        file_description="VTK PolyData Files (partitioned)" />
+       </Hints>
+     </SourceProxy>
+@@ -4346,7 +4346,7 @@
+         <Documentation>Available timestep values.</Documentation>
+       </DoubleVectorProperty>
+       <Hints>
+-        <ReaderFactory extensions="pvtu"
++        <ReaderFactory extensions="pvtu pvtu.series"
+                        file_description="VTK UnstructuredGrid Files (partitioned)" />
+       </Hints>
+     </SourceProxy>
+@@ -4406,7 +4406,7 @@
+         <Documentation>Available timestep values.</Documentation>
+       </DoubleVectorProperty>
+       <Hints>
+-        <ReaderFactory extensions="pvtt"
++        <ReaderFactory extensions="pvtt pvtt.series"
+                        file_description="VTK Table (partitioned)" />
+       </Hints>
+     </SourceProxy>
+@@ -4467,7 +4467,7 @@
+         <Documentation>Available timestep values.</Documentation>
+       </DoubleVectorProperty>
+       <Hints>
+-        <ReaderFactory extensions="pvti"
++        <ReaderFactory extensions="pvti pvti.series"
+                        file_description="VTK ImageData Files (partitioned)" />
+       </Hints>
+     </SourceProxy>
+@@ -4529,7 +4529,7 @@
+         <Documentation>Available timestep values.</Documentation>
+       </DoubleVectorProperty>
+       <Hints>
+-        <ReaderFactory extensions="pvts"
++        <ReaderFactory extensions="pvts pvts.series"
+                        file_description="VTK StructuredGrid Files (partitioned)" />
+       </Hints>
+     </SourceProxy>
+@@ -4591,7 +4591,7 @@
+         <Documentation>Available timestep values.</Documentation>
+       </DoubleVectorProperty>
+       <Hints>
+-        <ReaderFactory extensions="pvtr"
++        <ReaderFactory extensions="pvtr pvtr.series"
+                        file_description="VTK RectilinearGrid Files (partitioned)" />
+       </Hints>
+     </SourceProxy>
+@@ -4702,7 +4702,7 @@
+         Partitioned Legacy VTK reader.</Documentation>
+       </StringVectorProperty>
+       <Hints>
+-        <ReaderFactory extensions="pvtk"
++        <ReaderFactory extensions="pvtk pvtk.series"
+                        file_description="Legacy VTK Files (partitioned)" />
+       </Hints>
+       <!-- End pvtkfile -->
+@@ -5102,7 +5102,7 @@
+         <Documentation>Available timestep values.</Documentation>
+       </DoubleVectorProperty>
+       <Hints>
+-        <ReaderFactory extensions="ply"
++        <ReaderFactory extensions="ply ply.series"
+                        file_description="PLY Polygonal File Format" />
+       </Hints>
+     </SourceProxy>
+@@ -5230,7 +5230,7 @@
+         <Documentation>Available timestep values.</Documentation>
+       </DoubleVectorProperty>
+       <Hints>
+-        <ReaderFactory extensions="stl"
++        <ReaderFactory extensions="stl stl.series"
+                        file_description="Stereo Lithography" />
+       </Hints>
+       <!-- End stlreader-->

etc/pkgconfigAdjust

@@ -7,20 +7,8 @@
 #    \\/     M anipulation  |
 #------------------------------------------------------------------------------
 # License
-#     This file is part of OpenFOAM.
-#
-#     OpenFOAM is free software: you can redistribute it and/or modify it
-#     under the terms of the GNU General Public License as published by
-#     the Free Software Foundation, either version 3 of the License, or
-#     (at your option) any later version.
-#
-#     OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
-#     ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
-#     FITNESS FOR A PARTICULAR PURPOSE.  See the GNU General Public License
-#     for more details.
-#
-#     You should have received a copy of the GNU General Public License
-#     along with OpenFOAM.  If not, see <http://www.gnu.org/licenses/>.
+#     This file is part of OpenFOAM, licensed under GNU General Public License
+#     <http://www.gnu.org/licenses/>.
 #
 # Script
 #     etc/pkgconfigAdjust

etc/pkgconfigPrefix

@@ -7,20 +7,8 @@
 #    \\/     M anipulation  |
 #------------------------------------------------------------------------------
 # License
-#     This file is part of OpenFOAM.
-#
-#     OpenFOAM is free software: you can redistribute it and/or modify it
-#     under the terms of the GNU General Public License as published by
-#     the Free Software Foundation, either version 3 of the License, or
-#     (at your option) any later version.
-#
-#     OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
-#     ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
-#     FITNESS FOR A PARTICULAR PURPOSE.  See the GNU General Public License
-#     for more details.
-#
-#     You should have received a copy of the GNU General Public License
-#     along with OpenFOAM.  If not, see <http://www.gnu.org/licenses/>.
+#     This file is part of OpenFOAM, licensed under GNU General Public License
+#     <http://www.gnu.org/licenses/>.
 #
 # Script
 #     etc/pkgconfigPrefix

etc/relocateQt

@@ -7,20 +7,8 @@
 #    \\/     M anipulation  | Copyright (C) 2016-2017 OpenCFD Ltd.
 #------------------------------------------------------------------------------
 # License
-#     This file is part of OpenFOAM.
-#
-#     OpenFOAM is free software: you can redistribute it and/or modify it
-#     under the terms of the GNU General Public License as published by
-#     the Free Software Foundation, either version 3 of the License, or
-#     (at your option) any later version.
-#
-#     OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
-#     ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
-#     FITNESS FOR A PARTICULAR PURPOSE.  See the GNU General Public License
-#     for more details.
-#
-#     You should have received a copy of the GNU General Public License
-#     along with OpenFOAM.  If not, see <http://www.gnu.org/licenses/>.
+#     This file is part of OpenFOAM, licensed under GNU General Public License
+#     <http://www.gnu.org/licenses/>.
 #
 # Script
 #     etc/relocateQt

etc/tools/ParaViewFunctions

@@ -3,23 +3,11 @@
 # \\      /  F ield         | OpenFOAM: The Open Source CFD Toolbox
 #  \\    /   O peration     |
 #   \\  /    A nd           | Copyright (C) 2011-2016 OpenFOAM Foundation
-#    \\/     M anipulation  | Copyright (C) 2016-2017 OpenCFD Ltd.
+#    \\/     M anipulation  | Copyright (C) 2016-2018 OpenCFD Ltd.
 #------------------------------------------------------------------------------
 # License
-#     This file is part of OpenFOAM.
-#
-#     OpenFOAM is free software: you can redistribute it and/or modify it
-#     under the terms of the GNU General Public License as published by
-#     the Free Software Foundation, either version 3 of the License, or
-#     (at your option) any later version.
-#
-#     OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
-#     ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
-#     FITNESS FOR A PARTICULAR PURPOSE.  See the GNU General Public License
-#     for more details.
-#
-#     You should have received a copy of the GNU General Public License
-#     along with OpenFOAM.  If not, see <http://www.gnu.org/licenses/>.
+#     This file is part of OpenFOAM, licensed under GNU General Public License
+#     <http://www.gnu.org/licenses/>.
 #
 # File
 #     etc/tools/ParaViewFunctions
@@ -27,6 +15,18 @@
 # Description
 #     ParaView make/install helper functions
 #
+# Note
+#     Obtaining paths via 'python-config' is possible, but may not always
+#     resolve properly:
+#
+#         python-config --includes
+#         >>
+#             -I/usr/include/python2.7 -I/usr/include/python2.7
+#
+#         python-config --libs
+#         >>
+#             -lpython2.7 -lpthread -ldl -lutil -lm
+#
 #------------------------------------------------------------------------------
 
 # Variables referenced by the functions. Initialization at the end of the file.
@@ -116,10 +116,10 @@ setParaViewVersion()
 #
 addCMakeVariable()
 {
-    while [ -n "$1" ]
+    local i
+    for i
     do
-        CMAKE_VARIABLES="$CMAKE_VARIABLES -D$1"
-        shift
+        [ -n "$i" ] && CMAKE_VARIABLES="$CMAKE_VARIABLES -D$i"
     done
 }
 
@@ -146,7 +146,7 @@ addMpiSupport()
         return
     fi
 
-    addCMakeVariable "PARAVIEW_USE_MPI=ON VTK_USE_MPI=ON"
+    addCMakeVariable "PARAVIEW_USE_MPI=ON" "VTK_USE_MPI=ON"
     if [ "${MPI_MAX_PROCS:=0}" -gt 1 ]
     then
         addCMakeVariable "VTK_MPI_MAX_NUMPROCS=$MPI_MAX_PROCS"
@@ -159,68 +159,91 @@ addMpiSupport()
 #
 addPythonSupport()
 {
-    if [ "${withPYTHON:=false}" != true ]
+    if [ "${withPYTHON:-false}" != true ]
     then
         return
     fi
 
-    if pythonBin=$(which python 2>/dev/null)
-    then
-        if [ -n "$PYTHON_LIBRARY" ]
-        then
-            # Check $PYTHON_LIBRARY if it has been set
-            if [ ! -e "$PYTHON_LIBRARY" ]
-            then
-                echo "*** Error: libpython not found at location specified " \
-                     "by -pythnon-lib input: PYTHON_LIBRARY=$PYTHON_LIBRARY"
-            fi
-        else
-            # Try to get $PYTHON_LIBRARY from dynamically linked binary
-            PYTHON_LIBRARY=$(ldd $pythonBin | \
-                sed -ne '/libpython/s/.* => \(.*\) (.*/\1/p')
+    local pythonBin pythonConfig pythonMajor
 
-            [ -e "$PYTHON_LIBRARY" ] || {
-                echo "*** Error: Unable to determine path to python library."
-            }
-        fi
-
-        [ -e "$PYTHON_LIBRARY" ] || {
-            echo "    Please set the full path to the python library "
-            echo "    (including libpython) using the -python-lib option, "
-            echo "    or deactivate python support by not using the -python "
-            echo "    option"
-            exit 1
-        }
-
-        pythonMajor=$(echo $PYTHON_LIBRARY | sed 's/.*libpython\(.*\)\.so.*/\1/')
-        pythonInclude=/usr/include/python$pythonMajor
-
-        # Note - we could also allow for a PYTHON_INCLUDE variable ...
-        [ -d "$pythonInclude" -a -f "$pythonInclude/Python.h" ] || {
-            echo "    No python headers found in $pythonInclude/"
-            echo "    Please install python headers or deactivate "
-            echo "    python support by not using the -python option"
-            exit 1
-        }
-
-        addCMakeVariable "PARAVIEW_ENABLE_PYTHON=ON"
-        addCMakeVariable "PYTHON_INCLUDE_DIRS=$pythonInclude"
-        addCMakeVariable "PYTHON_LIBRARY=$PYTHON_LIBRARY"
-
-        echo "----"
-        echo "Python information:"
-        echo "    executable     : $pythonBin"
-        echo "    version        : $pythonMajor"
-        echo "    include path   : $pythonInclude"
-        echo "    library        : $PYTHON_LIBRARY"
-
-        unset pythonBin pythonInclude pythonMajor
-    else
+    pythonBin=$(which python 2>/dev/null) || {
         echo "*** Error: python not found"
         echo "***        Deactivate python support by not using the -python "
         echo "***        option"
         exit 1
+    }
+
+    if [ -n "$PYTHON_LIBRARY" ]
+    then
+
+        # PYTHON_LIBRARY set:
+        [ -e "$PYTHON_LIBRARY" ] || \
+            echo "*** Error: libpython not found at location specified " \
+                 "by -python-lib : PYTHON_LIBRARY=$PYTHON_LIBRARY"
+
+    else
+
+        # Fallback: get PYTHON_LIBRARY from dynamically linked binary
+
+        PYTHON_LIBRARY=$(ldd $pythonBin | \
+            sed -ne '/libpython/s/^.* => \(.*\) (.*/\1/p')
+
+        [ -e "$PYTHON_LIBRARY" ] || {
+            echo "*** Error: Unable to determine path to python library."
+        }
+
     fi
+
+    [ -e "$PYTHON_LIBRARY" ] || {
+        echo "    Please set the full path to the python library "
+        echo "    (including libpython) using the -python-lib option, "
+        echo "    or deactivate python support by not using the -python "
+        echo "    option"
+        exit 1
+    }
+
+    # Guess major from library
+    pythonMajor=$(echo $PYTHON_LIBRARY | sed 's/.*libpython\(.*\)\.so.*/\1/')
+
+    if [ -n "$PYTHON_INCLUDE" ]
+    then
+
+        # PYTHON_INCLUDE set:
+        [ -d "$PYTHON_INCLUDE" -a -f "$PYTHON_INCLUDE/Python.h" ] || \
+            echo "*** Error: Python.h not found at location specified " \
+                 "by -python-include : PYTHON_INCLUDE=$PYTHON_INCLUDE"
+
+    elif pythonConfig=$(which python-config 2>/dev/null)
+    then
+        # Guess from python-config
+        # parse '-I/usr/include/python2.7 -I/usr/include/python2.7'
+        # -> '/usr/include/python2.7'
+        PYTHON_INCLUDE=$(python-config --includes | sed -ne 's/^-I\([^ ][^ ]*\).*$/\1/p')
+
+    else
+
+        # Fallback to system headers
+        PYTHON_INCLUDE=/usr/include/python$pythonMajor
+
+    fi
+
+    [ -d "$PYTHON_INCLUDE" -a -f "$PYTHON_INCLUDE/Python.h" ] || {
+        echo "    No python headers found in $PYTHON_INCLUDE/"
+        echo "    Please install python headers or deactivate "
+        echo "    python support by not using the -python option"
+        exit 1
+    }
+
+    addCMakeVariable "PARAVIEW_ENABLE_PYTHON=ON"
+    addCMakeVariable "PYTHON_INCLUDE_DIRS=$PYTHON_INCLUDE"
+    addCMakeVariable "PYTHON_LIBRARY=$PYTHON_LIBRARY"
+
+    echo "----"
+    echo "Python information:"
+    echo "    executable     : $pythonBin"
+    echo "    version        : $pythonMajor"
+    echo "    include path   : $PYTHON_INCLUDE"
+    echo "    library        : $PYTHON_LIBRARY"
 }
 
 
@@ -281,7 +304,7 @@ addQtSupport()
     local qmake qtLib
 
     # Check qmake can be found and handle version differences
-    qmake=$(findQtMake)
+    qmake=$(findQMake)
     if QT_VERSION=$($qmake -query QT_VERSION 2>/dev/null)
     then
         addCMakeVariable "PARAVIEW_BUILD_QT_GUI=ON"
@@ -427,7 +450,7 @@ installParaView()
 
     # System or non-system installation of QT?
     local qmake qtLib QT_VERSION
-    if qmake=$(findQtMake 2>/dev/null)
+    if qmake=$(findQMake 2>/dev/null)
     then
         qtLib=$($qmake -query QT_INSTALL_LIBS)
         QT_VERSION=$($qmake -query QT_VERSION 2>/dev/null)

etc/tools/QtFunctions

@@ -6,20 +6,8 @@
 #    \\/     M anipulation  | Copyright (C) 2016-2017 OpenCFD Ltd.
 #------------------------------------------------------------------------------
 # License
-#     This file is part of OpenFOAM.
-#
-#     OpenFOAM is free software: you can redistribute it and/or modify it
-#     under the terms of the GNU General Public License as published by
-#     the Free Software Foundation, either version 3 of the License, or
-#     (at your option) any later version.
-#
-#     OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
-#     ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
-#     FITNESS FOR A PARTICULAR PURPOSE.  See the GNU General Public License
-#     for more details.
-#
-#     You should have received a copy of the GNU General Public License
-#     along with OpenFOAM.  If not, see <http://www.gnu.org/licenses/>.
+#     This file is part of OpenFOAM, licensed under GNU General Public License
+#     <http://www.gnu.org/licenses/>.
 #
 # File
 #     etc/tools/QtFunction

etc/tools/ThirdPartyFunctions

@@ -3,29 +3,17 @@
 # \\      /  F ield         | OpenFOAM: The Open Source CFD Toolbox
 #  \\    /   O peration     |
 #   \\  /    A nd           | Copyright (C) 2011-2016 OpenFOAM Foundation
-#    \\/     M anipulation  | Copyright (C) 2016-2017 OpenCFD Ltd.
+#    \\/     M anipulation  | Copyright (C) 2016-2018 OpenCFD Ltd.
 #------------------------------------------------------------------------------
 # License
-#     This file is part of OpenFOAM.
-#
-#     OpenFOAM is free software: you can redistribute it and/or modify it
-#     under the terms of the GNU General Public License as published by
-#     the Free Software Foundation, either version 3 of the License, or
-#     (at your option) any later version.
-#
-#     OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
-#     ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
-#     FITNESS FOR A PARTICULAR PURPOSE.  See the GNU General Public License
-#     for more details.
-#
-#     You should have received a copy of the GNU General Public License
-#     along with OpenFOAM.  If not, see <http://www.gnu.org/licenses/>.
+#     This file is part of OpenFOAM, licensed under GNU General Public License
+#     <http://www.gnu.org/licenses/>.
 #
 # File
 #     etc/tools/ThirdPartyFunctions
 #
 # Description
-#     Functions for managing the third-party packages
+#     Various functions used in building ThirdParty packages
 #
 #     Define the standard buildBASE and installBASE for the platform
 #     Define WM_NCOMPPROCS always.
@@ -36,8 +24,43 @@ sourceBASE=$WM_THIRD_PARTY_DIR
 buildBASE=$WM_THIRD_PARTY_DIR/build/$WM_ARCH$WM_COMPILER
 installBASE=$WM_THIRD_PARTY_DIR/platforms/$WM_ARCH$WM_COMPILER
 
+# Dynamic library endings (default is .so)
+[ "$(uname -s)" = Darwin ] && SO=dylib || SO=so
+
 unset BUILD_SUFFIX
 #------------------------------------------------------------------------------
+# Export WM compiler settings (and flags) for CMake/configure
+# $1 = true: export compiler flags too
+exportCompiler()
+{
+    if test -n "$WM_CC" && command -v "$WM_CC" >/dev/null
+    then
+        export CC="$WM_CC"
+        if [ "$1" = true -a -n "$WM_CFLAGS" ]
+        then
+            export CFLAGS="$WM_CFLAGS"
+        fi
+    fi
+
+    if test -n "$WM_CXX" && command -v "$WM_CXX" >/dev/null
+    then
+        export CXX="$WM_CXX"
+        if [ "$1" = true -a -n "$WM_CXXFLAGS" ]
+        then
+            export CXXFLAGS="$WM_CXXFLAGS"
+        fi
+    fi
+}
+
+# Export WM linker settings for CMake/configure
+exportLinker()
+{
+    if [ -n "$WM_LDFLAGS" ]
+    then
+        export LDFLAGS="$WM_LDFLAGS"
+    fi
+}
+
 # Force use of gcc/g++
 useGcc()
 {
@@ -58,33 +81,67 @@ useGccFlag()
     done
 }
 
-# Return mpiicc (for INTELMPI) or mpicc etc.
+# Return <mpicc> by default or <mpiicc> if possible for INTELMPI.
+# Cray doesn't have <mpicc>, but its <cc> manages mpi paths directly.
+# NOTE: could further refine based on $CC or $WM_CC, but not yet needed
 whichMpicc()
 {
-    local mpicc
+    local mpicc=$(command -v mpicc)
     case "$WM_MPLIB" in
     (INTELMPI)
-        mpicc=$(command -v mpiicc)      # Try using intel 'mpiicc'
+        mpicc=$(command -v mpiicc)  # Intel <mpiicc> available?
+        ;;
+    (CRAY-MPI*)
+        : ${mpicc:=cc}              # Cray <cc> if there is no <mpicc>
         ;;
     esac
-    echo "${mpicc:-mpicc}"              # mpiicc | mpicc
+    echo "${mpicc:-mpicc}"
+}
+
+# The presence of wmkdep etc required for building with wmake
+requireWMakeToolchain()
+{
+    local dir="${WM_DIR:-$WM_PROJECT_DIR/wmake}"
+    local src="$dir/src"
+    local bin="$dir/platforms/$WM_ARCH$WM_COMPILER/wmkdep"
+
+    test -x $bin || {
+        echo "Warning: the 'wmkdep' binary is missing - attempting to build it"
+        ( cd $src && make -s )
+    }
+
+    test -x $bin || {
+        exec 1>&2
+        echo
+        echo "Error: cannot use wmake build for '${0##*/}"
+        echo "    The 'wmkdep' binary is missing"
+        echo "    Please run the top-level OpenFOAM Allwmake first"
+        echo
+        exit 1
+    }
 }
 
 #------------------------------------------------------------------------------
 # Some functions as per OpenFOAM etc/config.sh/functions
 
-unset -f _foamAddLib _foamAddMan _foamAddPath   # Get settings only
-unset -f _foamEtc
+unset -f _foamAddLib _foamAddLibAuto _foamAddMan _foamAddPath # Get settings only
+unset -f _foamClean _foamConfig
 
-# Source an etc file
-_foamEtc()
-{
-    local file
-    if [ $# -gt 0 ] && file=$($WM_PROJECT_DIR/bin/foamEtcFile "$@")
-    then
-        . $file
-    fi
-}
+if [ -x "$WM_PROJECT_DIR/bin/foamCleanPath" ]
+then
+    # Cleaning environment variables
+    _foamClean()
+    {
+         local var=$1
+         shift
+         eval $($WM_PROJECT_DIR/bin/foamCleanPath -sh-env=$var "$@")
+    }
+else
+    _foamClean() { echo "No foamCleanPath" 1>&2; }
+fi
+
+# Source an etc/config.sh file
+_foamConfig() { eval "$($WM_PROJECT_DIR/bin/foamEtcFile -sh -config $@)"; }
 
 #------------------------------------------------------------------------------
 
@@ -110,20 +167,18 @@ setBuildSuffix()
 # - use max number of cores for building
 #
 unset WM_HOSTS WM_SCHEDULER
-if [ -r /proc/cpuinfo ]
-then
-    WM_NCOMPPROCS=$(egrep "^processor" /proc/cpuinfo | wc -l)
-else
-    WM_NCOMPPROCS=1
-fi
+
+WM_NCOMPPROCS=$(egrep -c "^processor" /proc/cpuinfo 2>/dev/null) || \
+WM_NCOMPPROCS=$(getconf _NPROCESSORS_ONLN 2>/dev/null) || \
+WM_NCOMPPROCS=1
+: ${WM_NCOMPPROCS:=1}
 export WM_NCOMPPROCS
-# echo "Building on $WM_NCOMPPROCS cores"
 
 
 #
 # If WM_CONTINUE_ON_ERROR not set activate the shell option "stop on error"
 #
-if [ -z "${WM_CONTINUE_ON_ERROR}" ]
+if [ -z "$WM_CONTINUE_ON_ERROR" ]
 then
     set -e
 fi
@@ -218,21 +273,26 @@ NOT_FOUND
         fi
     fi
 
-    # Default to use the path. Resolve so we know what we are using.
-    foundExe=$(command -v cmake 2> /dev/null) || foundExe=false
+    # Default to use the path, try resolving (so we know what we are using).
+    for candidate in cmake
+    do
+        foundExe=$(command -v $candidate 2>/dev/null) && break
+    done
+    : ${foundExe:=false}
+
     echo "Using cmake=$foundExe" 1>&2
     echo $foundExe
 }
 
 
 #
-# try to locate qmake according to the QMAKE_PATH
+# Try to locate qmake or qmake-qt5 according to the QMAKE_PATH
 #
 # On success: return the resolved value as output.
 # On failure: just report what is found in the path.
 #
 unset QMAKE_PATH # clear when first loaded
-findQtMake()
+findQMake()
 {
     local candidate foundExe
 
@@ -290,8 +350,14 @@ NOT_FOUND
         fi
     fi
 
-    # Default to use the path, try resolving (so we know what we are using)
-    foundExe=$(command -v qmake 2> /dev/null) || foundExe=false
+    # Default to use the path, try resolving (so we know what we are using).
+    # Some systems have qmake-qt5 as well as qmake
+    for candidate in qmake-qt5 qmake
+    do
+        foundExe=$(command -v $candidate 2>/dev/null) && break
+    done
+    : ${foundExe:=false}
+
     echo "Using qmake=$foundExe" 1>&2
     echo $foundExe
 }
@@ -333,7 +399,7 @@ pkgconfigNewPrefix()
             if [ -f "$i" -a ! -L "$i" ]
             then
                 nfiles="x$nfiles"
-                sed -i -e 's@^\(prefix=\).*$@\1'"$dir@" $i
+                sed -i~ -e 's@^\(prefix=\).*$@\1'"$dir@" $i
             fi
         done
         echo "    $libdir/*.pc  (edited ${#nfiles})"
@@ -381,7 +447,7 @@ pkgconfigAdjust()
             if [ -f "$i" -a ! -L "$i" ]
             then
                 nfiles="x$nfiles"
-                sed -i \
+                sed -i~ \
                     -e 's@^\(includedir=\)'"$dir/"'@\1${prefix}/@' \
                     -e 's@^\(libdir=\)'"$dir/"'@\1${prefix}/@'     \
                     -e 's@\(_location=\)'"$dir/"'@\1${prefix}/@'   \
@@ -417,7 +483,7 @@ downloadFile()
 
 
 #
-# Copy Make/{files,options} from etc/wmakeFiles/PACKAGE
+# Copy Make/{files,options} from etc/makeFiles/PACKAGE
 #
 # $1 = PACKAGE
 # $2 = TARGET DIRECTORY (optional)
@@ -432,7 +498,7 @@ cpMakeFiles()
     local dst="${2:-.}"
     echo "cpMakeFiles" $pkg $dst
 
-    wmakeFiles=$WM_THIRD_PARTY_DIR/etc/wmakeFiles/$pkg
+    wmakeFiles=$WM_THIRD_PARTY_DIR/etc/makeFiles/$pkg
 
     for i in $(cd $wmakeFiles && find . -type f)
     do
@@ -494,4 +560,5 @@ applyPatch()
     fi
 }
 
+
 #------------------------------------------------------------------------------

etc/tools/vtkFunctions

@@ -6,20 +6,8 @@
 #    \\/     M anipulation  |
 #------------------------------------------------------------------------------
 # License
-#     This file is part of OpenFOAM.
-#
-#     OpenFOAM is free software: you can redistribute it and/or modify it
-#     under the terms of the GNU General Public License as published by
-#     the Free Software Foundation, either version 3 of the License, or
-#     (at your option) any later version.
-#
-#     OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
-#     ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
-#     FITNESS FOR A PARTICULAR PURPOSE.  See the GNU General Public License
-#     for more details.
-#
-#     You should have received a copy of the GNU General Public License
-#     along with OpenFOAM.  If not, see <http://www.gnu.org/licenses/>.
+#     This file is part of OpenFOAM, licensed under GNU General Public License
+#     <http://www.gnu.org/licenses/>.
 #
 # File
 #     etc/tools/vtkFunctions
@@ -169,11 +157,12 @@ makeVTK()
     cd $VTK_BUILD_DIR || exit 1  # Change to build folder
     echo "    Starting make"
     time make -j $WM_NCOMPPROCS
-    echo "    Done make"
 
     # Remove lib if it is a link
     # (how this was previously handled before 'make install' worked)
     [ -L lib ] && rm -f lib 2>/dev/null
+
+    echo "    Done make"         # Last statement for clean return code
 }
 
 

etc/wmakeFiles/libccmio/options

@@ -1,3 +0,0 @@
-/* NOTE: make any changes to this file in etc/wmakeFiles/ */
-
-/* EXE_INC = */

makeADIOS

@@ -3,24 +3,12 @@
 # =========                 |
 # \\      /  F ield         | OpenFOAM: The Open Source CFD Toolbox
 #  \\    /   O peration     |
-#   \\  /    A nd           | Copyright (C) 2016-2017 OpenCFD Ltd.
+#   \\  /    A nd           | Copyright (C) 2016-2018 OpenCFD Ltd.
 #    \\/     M anipulation  |
 #------------------------------------------------------------------------------
 # License
-#     This file is part of OpenFOAM.
-#
-#     OpenFOAM is free software: you can redistribute it and/or modify it
-#     under the terms of the GNU General Public License as published by
-#     the Free Software Foundation, either version 3 of the License, or
-#     (at your option) any later version.
-#
-#     OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
-#     ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
-#     FITNESS FOR A PARTICULAR PURPOSE.  See the GNU General Public License
-#     for more details.
-#
-#     You should have received a copy of the GNU General Public License
-#     along with OpenFOAM.  If not, see <http://www.gnu.org/licenses/>.
+#     This file is part of OpenFOAM, licensed under GNU General Public License
+#     <http://www.gnu.org/licenses/>.
 #
 # Script
 #     makeADIOS
@@ -41,7 +29,7 @@ cd ${0%/*} && wmakeCheckPwd "$WM_THIRD_PARTY_DIR" 2>/dev/null || {
 #------------------------------------------------------------------------------
 
 # ADIOS version from OpenFOAM etc/config.sh file:
-_foamEtc config.sh/ADIOS
+_foamConfig ADIOS
 
 adiosPACKAGE=${adios_version:-adios-none}
 
@@ -51,7 +39,7 @@ usage() {
     while [ "$#" -ge 1 ]; do echo "$1"; shift; done
     cat<<USAGE
 
-usage: ${0##*/} [OPTION] [adios-VERSION]
+usage: ${0##*/} [OPTION] [adios-VERSION] [-- configure-options]
 options:
   -cmake PATH       With cmake from the path given
   -gcc              Force gcc/g++ instead of the values from \$WM_CC, \$WM_CXX
@@ -64,17 +52,14 @@ USAGE
     exit 1
 }
 #------------------------------------------------------------------------------
-# Compiler settings for CMake/configure
-[ -n "$WM_CC" ]         &&  export CC="$WM_CC"
-[ -n "$WM_CXX" ]        &&  export CXX="$WM_CXX"
-[ -n "$WM_CFLAGS" ]     &&  export CFLAGS="$WM_CFLAGS"
-[ -n "$WM_CXXFLAGS" ]   &&  export CXXFLAGS="$WM_CXXFLAGS"
+exportCompiler true     # Compiler info + flags for CMake/configure
 
 # Parse options
 while [ "$#" -gt 0 ]
 do
     case "$1" in
     '') ;;      # Ignore empty
+    --) break;; # Extra configure options (leave on $@ for later detection)
     -h | -help) usage   ;;
     -gcc)       useGcc  ;;
 
@@ -86,6 +71,7 @@ do
     ADIOS-[1-9]* | adios-[1-9]* | ADIOS-git* | adios-git*)
         adiosPACKAGE="${1%%/}"
         ;;
+
     *)
         die "unknown option/argument: '$1'"
         ;;
@@ -95,7 +81,7 @@ done
 
 [ -n "$adiosPACKAGE" ] || die "The adios-VERSION was not specified"
 
-# nothing to build
+# Nothing to build
 if _foamIsNone "$adiosPACKAGE"
 then
     echo "Using adios-none (skip ThirdParty build of ADIOS)"
@@ -246,7 +232,7 @@ then
     echo "Starting build: $adiosPACKAGE (using configure)"
     echo
     (
-        # configuration options:
+        # Configuration options:
         unset configOpt
 
         # Add InfiniBand support
@@ -257,22 +243,29 @@ then
         fi
 
         # Transport layers
-        if [ -f "/usr/include/bzlib.h" ]
+        if [ -f /usr/include/bzlib.h ]
         then
             configOpt="$configOpt --with-bzip2"
         fi
 
-        if [ -f "/usr/include/zlib.h" ]
+        if [ -f /usr/include/zlib.h ]
         then
             configOpt="$configOpt --with-zlib"
         fi
 
         # Other types of support
-        ## $configOpt="$configOpt --with-hdf5=..."
-        ## $configOpt="$configOpt --with-lustre=..."
+        ## configOpt="$configOpt --with-hdf5=..."
+        ## configOpt="$configOpt --with-lustre=..."
         ## configOpt="$configOpt --enable-research-transports"
 
-        # end of configuration options
+        # Additional configure options
+        if [ "$1" = "--" ]
+        then
+            shift
+            configOpt="$configOpt $@"
+        fi
+
+        # End of configuration options
         # ----------------------------
         buildDIR=$buildBASE/$adiosPACKAGE
 

makeADIOS2

@@ -0,0 +1,163 @@
+#!/bin/sh
+#------------------------------------------------------------------------------
+# =========                 |
+# \\      /  F ield         | OpenFOAM: The Open Source CFD Toolbox
+#  \\    /   O peration     |
+#   \\  /    A nd           | Copyright (C) 2018 OpenCFD Ltd.
+#    \\/     M anipulation  |
+#------------------------------------------------------------------------------
+# This file is part of OpenFOAM, licensed under the GNU General Public License
+# <http://www.gnu.org/licenses/>.
+#
+# Script
+#     makeADIOS2
+#
+# Description
+#     Build script for ADIOS2
+#
+# ----------------------------------------------
+# NO USER-CONFIGURABLE SETTINGS WITHIN THIS FILE
+#------------------------------------------------------------------------------
+# Run from third-party directory only
+cd ${0%/*} && wmakeCheckPwd "$WM_THIRD_PARTY_DIR" 2>/dev/null || {
+    echo "Error (${0##*/}) : not located in \$WM_THIRD_PARTY_DIR"
+    echo "    Check your OpenFOAM environment and installation"
+    exit 1
+}
+. etc/tools/ThirdPartyFunctions
+#------------------------------------------------------------------------------
+# ADIOS2 version from OpenFOAM etc/config.sh file:
+_foamConfig ADIOS2
+
+adios2PACKAGE=${adios2_version:-adios-none}
+
+#------------------------------------------------------------------------------
+usage() {
+    exec 1>&2
+    while [ "$#" -ge 1 ]; do echo "$1"; shift; done
+    cat<<USAGE
+
+usage: ${0##*/} [OPTION] [adios-VERSION]
+options:
+  -cmake PATH       With cmake from the path given
+  -gcc              Force gcc/g++ instead of the values from \$WM_CC, \$WM_CXX
+  -help
+
+* Build ADIOS2
+      $adios2PACKAGE
+
+USAGE
+    exit 1
+}
+#------------------------------------------------------------------------------
+exportCompiler true     # Compiler info + flags for CMake/configure
+
+# Parse options
+while [ "$#" -gt 0 ]
+do
+    case "$1" in
+    '') ;;      # Ignore empty
+    -h | -help) usage   ;;
+    -gcc)       useGcc  ;;
+
+    -cmake)
+        [ "$#" -ge 2 ] || die "'$1' option requires an argument"
+        CMAKE_PATH="${2%%/}"
+        shift
+        ;;
+    ADIOS2-[1-9]* | adios2-[1-9]* | ADIOS2-git* | adios2-git*)
+        adios2PACKAGE="${1%%/}"
+        ;;
+    *)
+        die "unknown option/argument: '$1'"
+        ;;
+    esac
+    shift
+done
+
+[ -n "$adios2PACKAGE" ] || die "The adios2-VERSION was not specified"
+
+# nothing to build
+if _foamIsNone "$adios2PACKAGE"
+then
+    echo "Using adios-none (skip ThirdParty build of ADIOS)"
+    exit 0
+elif _foamIsSystem "$adios2PACKAGE"
+then
+    echo "Using adios-system"
+    exit 0
+fi
+
+#------------------------------------------------------------------------------
+#
+# Build ADIOS
+#   ADIOS2_SOURCE_DIR : location of the original sources
+#   ADIOS2_ARCH_PATH  : installation directory
+
+ADIOS2_SOURCE_DIR=$sourceBASE/$adios2PACKAGE
+ADIOS2_ARCH_PATH=$installBASE/$adios2PACKAGE
+
+: ${FOAM_MPI:=dummy}
+
+echo
+echo ========================================
+echo "Build adios library $adiosPACKAGE for $FOAM_MPI"
+echo
+
+
+# Needs future adjustment
+# - for shared library
+# - for mpi-specific library locations
+if [ -f $ADIOS2_ARCH_PATH/include/adios.h \
+  -a -r $ADIOS2_ARCH_PATH/lib$WM_COMPILER_LIB_ARCH/libadios_${FOAM_MPI}.a ]
+then
+    echo "    ADIOS2 header in $ADIOS2_ARCH_PATH/include"
+    ### echo "    ADIOS2 libs   in $FOAM_EXT_LIBBIN"           # dynamic
+    echo "    ADIOS2 libs   in $ADIOS2_ARCH_PATH/lib$WM_COMPILER_LIB_ARCH" # static
+else
+    # CMake options often lag the configure ones
+    echo "Starting build: $adios2PACKAGE (using cmake)"
+    echo
+    (
+        buildDIR=$buildBASE/$adios2PACKAGE
+        cd $ADIOS2_SOURCE_DIR || exit 1
+        export GIT_DIR=$PWD/.git # Mask seeing our own git-repo
+
+        applyPatch $adios2PACKAGE $ADIOS2_SOURCE_DIR
+
+        # Remove any existing build folder and recreate
+        rm -rf $ADIOS2_ARCH_DIR
+        rm -rf $buildDIR 2>/dev/null
+        mkdir -p $buildDIR
+
+        # May not work properly with FOAM_MPI = dummy
+        if [ "$FOAM_MPI" = dummy ]
+        then
+            configOpt="$configOpt --without-mpi"
+        else
+            CC=mpicc
+            CXX=mpicxx
+        fi
+
+# HACK
+export ADIOS1_ROOT=/local/home/mark/openfoam/ThirdParty-plus/platforms/linux64Gcc/ADIOS-1.12.0
+
+        cmake=$(findCMake)
+
+        # Install into lib64/
+        cd $buildDIR && $cmake \
+            -DCMAKE_INSTALL_PREFIX=$ADIOS2_ARCH_PATH \
+            -DCMAKE_BUILD_TYPE=Release \
+            -DBUILD_FORTRAN=FALSE \
+            -DADIOS1_USE_STATIC_LIBS=TRUE \
+            ${WM_QUIET:+-DCMAKE_RULE_MESSAGES=OFF} \
+            $ADIOS2_SOURCE_DIR \
+        && make -j $WM_NCOMPPROCS all \
+        && make install \
+        && echo "Built: $adios2PACKAGE"
+    ) || {
+        echo "Error building: $adios2PACKAGE"
+    }
+fi
+
+# -----------------------------------------------------------------------------

makeCCMIO

@@ -4,23 +4,11 @@
 # \\      /  F ield         | OpenFOAM: The Open Source CFD Toolbox
 #  \\    /   O peration     |
 #   \\  /    A nd           | Copyright (C) 2011-2016 OpenFOAM Foundation
-#    \\/     M anipulation  | Copyright (C) 2016-2017 OpenCFD Ltd.
+#    \\/     M anipulation  | Copyright (C) 2016-2018 OpenCFD Ltd.
 #------------------------------------------------------------------------------
 # License
-#     This file is part of OpenFOAM.
-#
-#     OpenFOAM is free software: you can redistribute it and/or modify it
-#     under the terms of the GNU General Public License as published by
-#     the Free Software Foundation, either version 3 of the License, or
-#     (at your option) any later version.
-#
-#     OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
-#     ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
-#     FITNESS FOR A PARTICULAR PURPOSE.  See the GNU General Public License
-#     for more details.
-#
-#     You should have received a copy of the GNU General Public License
-#     along with OpenFOAM.  If not, see <http://www.gnu.org/licenses/>.
+#     This file is part of OpenFOAM, licensed under GNU General Public License
+#     <http://www.gnu.org/licenses/>.
 #
 # Script
 #     makeCCMIO
@@ -31,6 +19,9 @@
 # ----------------------------------------------
 # NO USER-CONFIGURABLE SETTINGS WITHIN THIS FILE
 #------------------------------------------------------------------------------
+# Dynamic library endings (default is .so)
+[ "$(uname -s)" = Darwin ] && SO=dylib || SO=so
+
 # Run from third-party directory only
 cd ${0%/*} && wmakeCheckPwd "$WM_THIRD_PARTY_DIR" 2>/dev/null || {
     echo "Error (${0##*/}) : not located in \$WM_THIRD_PARTY_DIR"
@@ -46,7 +37,7 @@ cd ${0%/*} && wmakeCheckPwd "$WM_THIRD_PARTY_DIR" 2>/dev/null || {
 #------------------------------------------------------------------------------
 
 # libccmio version from OpenFOAM etc/config.sh file:
-_foamEtc config.sh/ccmio
+_foamConfig ccmio
 
 ccmioPACKAGE=${ccmio_version:-libccmio-2.6.1}
 targetType=lib  # Default is static linkage
@@ -101,6 +92,8 @@ do
     shift
 done
 
+requireWMakeToolchain
+
 #------------------------------------------------------------------------------
 #
 # Build LIBCCMIO
@@ -111,29 +104,48 @@ CCMIO_ARCH_PATH=$installBASE/$ccmioPACKAGE
 # Sources must be available
 [ -d "$CCMIO_SOURCE_DIR" ] || die "Missing sources: '$ccmioPACKAGE'"
 
+#
+# Manual installation
+#
+install()
+{
+    # Ensure a clean build next time
+    wclean
+
+    local incdir=$CCMIO_ARCH_PATH/include/libccmio
+
+    # Make headers available:
+    mkdir -m 0755 -p $incdir
+
+    /bin/cp -pv libccmio/ccmio*.h $incdir
+}
+
+echo "Starting build: $ccmioPACKAGE ($targetType)"
+echo
 (
     cd $CCMIO_SOURCE_DIR || exit 1
     export GIT_DIR=$PWD/.git # Mask seeing our own git-repo
 
-    incDIR=$CCMIO_ARCH_PATH/include/libccmio
-    libDIR=$CCMIO_ARCH_PATH/lib
+    rm -rf $CCMIO_ARCH_PATH
+    rm -f $FOAM_EXT_LIBBIN/libccmio.$SO
 
-    mkdir -p $incDIR 2>/dev/null
-    mkdir -p $libDIR 2>/dev/null
+    libdir=$CCMIO_ARCH_PATH/lib
 
     cpMakeFiles libccmio 2>/dev/null
 
     # Place static libraries in sub-directory:
     if [ "$targetType" = lib ]
     then
-        export FOAM_EXT_LIBBIN=$libDIR
+        mkdir -m 0755 -p $libdir 2>/dev/null
+        export FOAM_EXT_LIBBIN=$libdir
     fi
 
-    if wmake $targetType
-    then
-        # Make headers available:
-        /bin/cp -pv libccmio/ccmio*.h $incDIR
-    fi
-)
+    wmake -j $WM_NCOMPPROCS -s $targetType \
+    && echo "Built: ccmio" \
+    && install
+) || {
+    echo "Error building: ccmio"
+    exit 1
+}
 
 #------------------------------------------------------------------------------

makeCGAL

@@ -4,23 +4,11 @@
 # \\      /  F ield         | OpenFOAM: The Open Source CFD Toolbox
 #  \\    /   O peration     |
 #   \\  /    A nd           | Copyright (C) 2012-2016 OpenFOAM Foundation
-#    \\/     M anipulation  | Copyright (C) 2016-2017 OpenCFD Ltd.
+#    \\/     M anipulation  | Copyright (C) 2016-2018 OpenCFD Ltd.
 #------------------------------------------------------------------------------
 # License
-#     This file is part of OpenFOAM.
-#
-#     OpenFOAM is free software: you can redistribute it and/or modify it
-#     under the terms of the GNU General Public License as published by
-#     the Free Software Foundation, either version 3 of the License, or
-#     (at your option) any later version.
-#
-#     OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
-#     ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
-#     FITNESS FOR A PARTICULAR PURPOSE.  See the GNU General Public License
-#     for more details.
-#
-#     You should have received a copy of the GNU General Public License
-#     along with OpenFOAM.  If not, see <http://www.gnu.org/licenses/>.
+#     This file is part of OpenFOAM, licensed under GNU General Public License
+#     <http://www.gnu.org/licenses/>.
 #
 # Script
 #     makeCGAL
@@ -37,24 +25,27 @@
 # ----------------------------------------------
 # NO USER-CONFIGURABLE SETTINGS WITHIN THIS FILE
 #------------------------------------------------------------------------------
+# Dynamic library endings (default is .so)
+[ "$(uname -s)" = Darwin ] && SO=dylib || SO=so
+
 # Short-circuit test for an installation
 if [ "$1" = "-test" ]
 then
     [ "$#" -eq 3 ] || { echo "${0##*/} -test : needs 2 argument"; exit 1; }
     dir="$2" # <- CGAL_ARCH_PATH
-    if [ -d "$dir/include" -a -r "$dir/lib$WM_COMPILER_LIB_ARCH/libCGAL.so" ]
+    if [ -d "$dir/include" -a -r "$dir/lib$WM_COMPILER_LIB_ARCH/libCGAL.$SO" ]
     then
-        echo "    CGAL  headers in $dir/include"
-        echo "    CGAL  libs    in $dir/lib$WM_COMPILER_LIB_ARCH"
+        echo "    CGAL  include: $dir/include"
+        echo "    CGAL  library: $dir/lib$WM_COMPILER_LIB_ARCH"
         # Additional information about boost
         dir="$3" # <- BOOST_ARCH_PATH
         for root in "$dir" /usr
         do
             if [ -d "$root/include/boost" \
-              -a -r "$root/lib$WM_COMPILER_LIB_ARCH/libboost_system.so" ]
+              -a -r "$root/lib$WM_COMPILER_LIB_ARCH/libboost_system.$SO" ]
             then
-                echo "    BOOST headers in $root/include"
-                echo "    BOOST libs    in $root/lib$WM_COMPILER_LIB_ARCH"
+                echo "    boost include: $root/include"
+                echo "    boost library: $root/lib$WM_COMPILER_LIB_ARCH"
                 break
             fi
         done
@@ -72,13 +63,12 @@ cd ${0%/*} && wmakeCheckPwd "$WM_THIRD_PARTY_DIR" 2>/dev/null || {
 }
 . etc/tools/ThirdPartyFunctions
 #------------------------------------------------------------------------------
-
-unset BOOST_ARCH_PATH CGAL_ARCH_PATH                     # Purge current values
+unset BOOST_ARCH_PATH CGAL_ARCH_PATH GMP_ARCH_PATH MPFR_ARCH_PATH   # Purge old
 
 # CGAL, boost and gmp/mpfr versions from OpenFOAM etc/config.sh files.
-# Get compiler first and let CGAL config override GMP (eg, when there is no GMP)
-_foamEtc config.sh/compiler
-_foamEtc config.sh/CGAL
+# Get compiler first and let CGAL config override GMP and MPFR
+_foamConfig compiler
+_foamConfig CGAL
 
 boostPACKAGE=${boost_version:-boost-system}
 gmpPACKAGE=${gmp_version:-gmp-system}
@@ -116,12 +106,9 @@ USAGE
     exit 1
 }
 #------------------------------------------------------------------------------
-# Compiler settings for CMake/configure
-[ -n "$WM_CC" ]  && export CC="$WM_CC"
-[ -n "$WM_CXX" ] && export CXX="$WM_CXX"
+exportCompiler          # Compiler info for CMake/configure
 
 unset optHeadersOnly
-
 # Parse options
 while [ "$#" -gt 0 ]
 do
@@ -139,24 +126,26 @@ do
         gmpPACKAGE="gmp-system"
         mpfrPACKAGE="mpfr-system"
         boostPACKAGE="boost-system"
-        unset BOOST_ARCH_PATH           # avoid inconsistency
+        unset BOOST_ARCH_PATH GMP_ARCH_PATH MPFR_ARCH_PATH
         ;;
     -no-lib)
         optHeadersOnly=true
         ;;
     gmp-[4-9]* | gmp-system | gmp-none)
         gmpPACKAGE="${1%%/}"
+        unset GMP_ARCH_PATH
         ;;
     mpfr-[2-9]* | mpfr-system | mpfr-none)
         mpfrPACKAGE="${1%%/}"
-        ;;
-    CGAL-[0-9]*)
-        cgalPACKAGE="${1%%/}"
-        unset CGAL_ARCH_PATH            # avoid inconsistency
+        unset MPFR_ARCH_PATH
         ;;
     boost-[0-9]* | boost_[0-9]* | boost-system )
         boostPACKAGE="${1%%/}"
-        unset BOOST_ARCH_PATH           # avoid inconsistency
+        unset BOOST_ARCH_PATH
+        ;;
+    CGAL-[0-9]*)
+        cgalPACKAGE="${1%%/}"
+        unset CGAL_ARCH_PATH
         ;;
     *)
         die "unknown option/argument: '$1'"
@@ -201,14 +190,37 @@ then
     echo "Using boost-system (skip ThirdParty build of BOOST)"
 
     # Tagged as 'system' but could actually point to a central location
-    [ -d "$BOOST_ARCH_PATH/include" ] || {
+
+    if [ -d "$boostInc" ]
+    then
+        if BOOST_ARCH_PATH=$(cd $BOOST_ARCH_PATH 2>/dev/null && pwd -P)
+        then
+            boostPACKAGE=${BOOST_ARCH_PATH##*/}
+        else
+            echo "ERROR: bad path for BOOST_ARCH_PATH"
+            echo "stopping build"
+            exit 1
+        fi
+
+        libdir="$BOOST_ARCH_PATH/lib"
+    else
         boostInc="/usr/include"
         boostLib="/usr/lib$WM_COMPILER_LIB_ARCH"
-    }
+        libdir="/usr/lib"
+    fi
+
+    # Use lib/ when lib64/ does not exist
+    [ ! -d "$boostLib" -a -d "$libdir" ] && boostLib="$libdir"
 
 elif [ -f "$boostInc/boost/version.hpp" ]
 then
     echo "Using $boostPACKAGE"
+
+    libdir="$BOOST_ARCH_PATH/lib"
+
+    # Use lib when lib64 does not exist
+    [ ! -d "$boostLib" -a -d "$libdir" ] && boostLib="$libdir"
+
 else
     echo "Starting build: $boostPACKAGE"
     echo
@@ -233,7 +245,7 @@ else
     }
 fi
 
-# nothing left to build
+# Nothing left to build
 if _foamIsSystem $cgalPACKAGE
 then
     echo "Using cgal-system (skip ThirdParty build of CGAL)"
@@ -254,18 +266,6 @@ else
     exit 1
 fi
 
-#------------------------------------------------------------------------------
-
-cat<<SUMMARY
-CGAL configuration
-------------------
-    CGAL    = $cgalPACKAGE
-    BOOST   = $boostPACKAGE
-    GMP     = $gmpPACKAGE
-    MPFR    = $mpfrPACKAGE
-------------------
-SUMMARY
-
 #------------------------------------------------------------------------------
 #
 # Build CGAL
@@ -283,22 +283,61 @@ CGAL_BUILD_DIR=$buildBASE/$cgalPACKAGE
 : ${CGAL_ARCH_PATH:=$installBASE/$cgalPACKAGE}      # Fallback
 
 # gmp/mpfr are installed without compiler name
-installBASE=$WM_THIRD_PARTY_DIR/platforms/$WM_ARCH$WM_COMPILER_ARCH
-
-GMP_ARCH_PATH=$installBASE/$gmpPACKAGE
-MPFR_ARCH_PATH=$installBASE/$mpfrPACKAGE
+mpfrBASE=$WM_THIRD_PARTY_DIR/platforms/$WM_ARCH$WM_COMPILER_ARCH
 
 # Enable/disable gmp/mpfr together
 if _foamIsNone $gmpPACKAGE || _foamIsNone $mpfrPACKAGE
 then
     GMP_ARCH_PATH=none
     MPFR_ARCH_PATH=none
-elif _foamIsSystem $GMP_ARCH_PATH || _foamIsSystem $MPFR_ARCH_PATH
+elif _foamIsSystem $gmpPACKAGE || _foamIsSystem $mpfrPACKAGE
 then
-    GMP_ARCH_PATH=system    # for an accurate record
-    MPFR_ARCH_PATH=system
+    # May really be system, but could also by a central installation
+    # Ensure everything is accurately recorded. Resolve paths etc.
+
+    if [ -d "$GMP_ARCH_PATH" ]
+    then
+        if GMP_ARCH_PATH=$(cd $GMP_ARCH_PATH 2>/dev/null && pwd -P)
+        then
+            gmpPACKAGE=${GMP_ARCH_PATH##*/}
+        else
+            echo "ERROR: bad path for GMP_ARCH_PATH"
+            echo "stopping build"
+            exit 1
+        fi
+    else
+        GMP_ARCH_PATH=system
+    fi
+
+    if [ -d "$MPFR_ARCH_PATH" ]
+    then
+        if MPFR_ARCH_PATH=$(cd $MPFR_ARCH_PATH 2>/dev/null && pwd -P)
+        then
+            mpfrPACKAGE=${MPFR_ARCH_PATH##*/}
+        else
+            echo "ERROR: bad path for MPFR_ARCH_PATH"
+            echo "stopping build"
+            exit 1
+        fi
+    else
+        MPFR_ARCH_PATH=system
+    fi
+else
+    GMP_ARCH_PATH=$mpfrBASE/$gmpPACKAGE
+    MPFR_ARCH_PATH=$mpfrBASE/$mpfrPACKAGE
 fi
 
+#------------------------------------------------------------------------------
+
+cat<<SUMMARY
+CGAL configuration
+------------------
+    CGAL    = $cgalPACKAGE
+    BOOST   = $boostPACKAGE
+    GMP     = $gmpPACKAGE
+    MPFR    = $mpfrPACKAGE
+------------------
+SUMMARY
 
 #
 # build information recorded for later use
@@ -326,7 +365,7 @@ BUILD_INFO
 }
 
 
-# compare expected vs what is extracted as KEY=... in text
+# Compare expected vs what is extracted as KEY=... in text
 # $1 = key
 # $2 = expected
 # $3 = text to extract from
@@ -342,10 +381,11 @@ infoValueEq()
     fi
 }
 
-# needs build
+# Needs build
 cgalIsCurrent()
 {
-    local info=$(cat $buildInfoFile 2>/dev/null)
+    # Only need VAR=... (also avoids embedded '#' that bothers some shells)
+    local info=$(sed -n -e '/^[A-Z]/p' $buildInfoFile 2>/dev/null)
     [ -n "$info" ] || return 1
 
     local libDirName="lib$WM_COMPILER_LIB_ARCH"
@@ -396,24 +436,27 @@ fi
     # See http://doc.cgal.org/latest/Manual/installation.html
     if _foamIsSystem $boostPACKAGE
     then
-        echo "    system         : boost"
         # Tagged as 'system' but could actually point to a central location
         if [ -d "$BOOST_ARCH_PATH/include" ]
         then
+            echo "    boost          : ${BOOST_ARCH_PATH##*/}"
             configBoost="-DBOOST_ROOT=$BOOST_ARCH_PATH"
+        else
+            echo "    boost          : system"
         fi
+
         ## For system - possible that /usr/lib64 not being found?
         ## configBoost="-DBoost_LIBRARY_DIRS=$boostLib"
     elif [ -d "$BOOST_ARCH_PATH" ]
     then
-        echo "    ThirdParty     : boost"
+        echo "    boost          : $boostPACKAGE"
         configBoost=$(cat <<CMAKE_OPTIONS
  -DBoost_INCLUDE_DIR=$boostInc
  -DBoost_LIBRARY_DIRS=$boostLib
- -DBoost_THREAD_LIBRARY=$boostLib/libboost_thread.so
- -DBoost_THREAD_LIBRARY_RELEASE=$boostLib/libboost_thread.so
- -DBoost_SYSTEM_LIBRARY=$boostLib/libboost_system.so
- -DBoost_SYSTEM_LIBRARY_RELEASE=$boostLib/libboost_system.so
+ -DBoost_THREAD_LIBRARY=$boostLib/libboost_thread.$SO
+ -DBoost_THREAD_LIBRARY_RELEASE=$boostLib/libboost_thread.$SO
+ -DBoost_SYSTEM_LIBRARY=$boostLib/libboost_system.$SO
+ -DBoost_SYSTEM_LIBRARY_RELEASE=$boostLib/libboost_system.$SO
  -DBoost_VERSION=$BOOST_VERSION
 CMAKE_OPTIONS
 )
@@ -421,44 +464,64 @@ CMAKE_OPTIONS
 
     if _foamIsSystem $GMP_ARCH_PATH
     then
-        echo "    system         : gmp"
+        echo "    gmp            : system"
     elif _foamIsNone $GMP_ARCH_PATH
     then
-        echo "    disabled       : gmp"
+        echo "    gmp            : disabled"
         configGmp="-DCGAL_DISABLE_GMP=TRUE"  # Also used for mpfr
     elif [ -d "$GMP_ARCH_PATH" ]
     then
-        echo "    ThirdParty     : gmp"
-        configGmp=$(cat <<CMAKE_OPTIONS
+        echo "    gmp            : $gmpPACKAGE"
+
+        for libdir in \
+            $GMP_ARCH_PATH/lib$WM_COMPILER_LIB_ARCH \
+            $GMP_ARCH_PATH/lib \
+        ;
+        do
+            if [ -f "$libdir/libgmp.$SO" ]
+            then
+                configGmp=$(cat <<CMAKE_OPTIONS
  -DGMP_INCLUDE_DIR=$GMP_ARCH_PATH/include
- -DGMP_LIBRARIES_DIR=$GMP_ARCH_PATH/lib$WM_COMPILER_LIB_ARCH
- -DGMP_LIBRARIES=$GMP_ARCH_PATH/lib$WM_COMPILER_LIB_ARCH/libgmp.so
- -DGMPXX_INCLUDE_DIR=$GMP_ARCH_PATH/include
- -DGMPXX_LIBRARIES=$GMP_ARCH_PATH/lib$WM_COMPILER_LIB_ARCH/libgmpxx.so
+ -DGMP_LIBRARIES_DIR=$libdir
+ -DGMP_LIBRARIES=$libdir/libgmp.$SO
 CMAKE_OPTIONS
 )
+                break
+            fi
+        done
     else
         echo "    system         : gmp (did not find $GMP_ARCH_PATH)"
     fi
 
     if _foamIsSystem $MPFR_ARCH_PATH
     then
-        echo "    system         : mpfr"
+        echo "    mpfr           : system"
     elif _foamIsNone $MPFR_ARCH_PATH
     then
-        echo "    disabled       : mpfr"
+        echo "    mpfr           : disabled"
         configGmp="-DCGAL_DISABLE_GMP=TRUE"  # Also used for mpfr
     elif [ -d "$MPFR_ARCH_PATH" ]
     then
-        echo "    ThirdParty     : mpfr"
-        configMpfr=$(cat <<CMAKE_OPTIONS
+        echo "    mpfr           : $mpfrPACKAGE"
+
+        for libdir in \
+            $MPFR_ARCH_PATH/lib$WM_COMPILER_LIB_ARCH \
+            $MPFR_ARCH_PATH/lib \
+        ;
+        do
+            if [ -f "$libdir/libmpfr.$SO" ]
+            then
+                configMpfr=$(cat <<CMAKE_OPTIONS
  -DMPFR_INCLUDE_DIR=$MPFR_ARCH_PATH/include
- -DMPFR_LIBRARIES_DIR=$MPFR_ARCH_PATH/lib$WM_COMPILER_LIB_ARCH
- -DMPFR_LIBRARIES=$MPFR_ARCH_PATH/lib$WM_COMPILER_LIB_ARCH/libmpfr.so
+ -DMPFR_LIBRARIES_DIR=$libdir
+ -DMPFR_LIBRARIES=$libdir/libmpfr.$SO
 CMAKE_OPTIONS
 )
+                break
+            fi
+        done
     else
-        echo "    system         : mpfr (did not find $MPFR_ARCH_PATH)"
+        echo "    mpfr           : system (did not find $MPFR_ARCH_PATH)"
     fi
 
     cmake=$(findCMake)
@@ -496,7 +559,7 @@ CMAKE_OPTIONS
         fi
     done
 
-    # record our build-status
+    # Record our build-status
     recordCGALinfo
 
     echo "Done CGAL"

makeCmake

@@ -4,23 +4,11 @@
 # \\      /  F ield         | OpenFOAM: The Open Source CFD Toolbox
 #  \\    /   O peration     |
 #   \\  /    A nd           | Copyright (C) 2011 OpenFOAM Foundation
-#    \\/     M anipulation  | Copyright (C) 2016-2017 OpenCFD Ltd.
+#    \\/     M anipulation  | Copyright (C) 2016-2018 OpenCFD Ltd.
 #------------------------------------------------------------------------------
 # License
-#     This file is part of OpenFOAM.
-#
-#     OpenFOAM is free software: you can redistribute it and/or modify it
-#     under the terms of the GNU General Public License as published by
-#     the Free Software Foundation, either version 3 of the License, or
-#     (at your option) any later version.
-#
-#     OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
-#     ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
-#     FITNESS FOR A PARTICULAR PURPOSE.  See the GNU General Public License
-#     for more details.
-#
-#     You should have received a copy of the GNU General Public License
-#     along with OpenFOAM.  If not, see <http://www.gnu.org/licenses/>.
+#     This file is part of OpenFOAM, licensed under GNU General Public License
+#     <http://www.gnu.org/licenses/>.
 #
 # Script
 #     makeCmake
@@ -65,9 +53,7 @@ USAGE
     exit 1
 }
 #------------------------------------------------------------------------------
-# Compiler settings for CMake/configure
-[ -n "$WM_CC" ]  && export CC="$WM_CC"
-[ -n "$WM_CXX" ] && export CXX="$WM_CXX"
+exportCompiler          # Compiler info for CMake/configure
 
 unset optLink
 # Parse options

makeFFTW

@@ -3,24 +3,12 @@
 # =========                 |
 # \\      /  F ield         | OpenFOAM: The Open Source CFD Toolbox
 #  \\    /   O peration     |
-#   \\  /    A nd           | Copyright (C) 2016-2017 OpenCFD Ltd.
+#   \\  /    A nd           | Copyright (C) 2016-2018 OpenCFD Ltd.
 #    \\/     M anipulation  |
 #------------------------------------------------------------------------------
 # License
-#     This file is part of OpenFOAM.
-#
-#     OpenFOAM is free software: you can redistribute it and/or modify it
-#     under the terms of the GNU General Public License as published by
-#     the Free Software Foundation, either version 3 of the License, or
-#     (at your option) any later version.
-#
-#     OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
-#     ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
-#     FITNESS FOR A PARTICULAR PURPOSE.  See the GNU General Public License
-#     for more details.
-#
-#     You should have received a copy of the GNU General Public License
-#     along with OpenFOAM.  If not, see <http://www.gnu.org/licenses/>.
+#     This file is part of OpenFOAM, licensed under GNU General Public License
+#     <http://www.gnu.org/licenses/>.
 #
 # Script
 #     makeFFTW
@@ -31,15 +19,18 @@
 # ----------------------------------------------
 # NO USER-CONFIGURABLE SETTINGS WITHIN THIS FILE
 #------------------------------------------------------------------------------
+# Dynamic library endings (default is .so)
+[ "$(uname -s)" = Darwin ] && SO=dylib || SO=so
+
 # Short-circuit test for an installation
 if [ "$1" = "-test" ]
 then
     [ "$#" -eq 2 ] || { echo "${0##*/} -test : needs 1 argument"; exit 1; }
     dir="$2" # <- FFTW_ARCH_PATH
-    if [ -d "$dir/include" -a -r "$dir/lib$WM_COMPILER_LIB_ARCH/libfftw3.so" ]
+    if [ -d "$dir/include" -a -r "$dir/lib$WM_COMPILER_LIB_ARCH/libfftw3.$SO" ]
     then
-        echo "    FFTW headers in $dir/include"
-        echo "    FFTW libs    in $dir/lib$WM_COMPILER_LIB_ARCH"
+        echo "    fftw include: $dir/include"
+        echo "    fftw library: $dir/lib$WM_COMPILER_LIB_ARCH"
         exit 0
     else
         exit 2
@@ -56,7 +47,7 @@ cd ${0%/*} && wmakeCheckPwd "$WM_THIRD_PARTY_DIR" 2>/dev/null || {
 #------------------------------------------------------------------------------
 
 # FFTW version from OpenFOAM etc/config.sh file:
-_foamEtc config.sh/FFTW
+_foamConfig FFTW
 
 fftwPACKAGE=${fftw_version:-fftw-system}
 
@@ -66,7 +57,7 @@ usage() {
     while [ "$#" -ge 1 ]; do echo "$1"; shift; done
     cat<<USAGE
 
-usage: ${0##*/} [OPTION] [fftw-VERSION]
+usage: ${0##*/} [OPTION] [fftw-VERSION] [-- configure-options]
 options:
   -gcc              Force gcc/g++ instead of the values from \$WM_CC, \$WM_CXX
   -help
@@ -78,15 +69,14 @@ USAGE
     exit 1
 }
 #------------------------------------------------------------------------------
-# Compiler settings for CMake/configure
-[ -n "$WM_CC" ]  && export CC="$WM_CC"
-[ -n "$WM_CXX" ] && export CXX="$WM_CXX"
+exportCompiler          # Compiler info for CMake/configure
 
 # Parse options
 while [ "$#" -gt 0 ]
 do
     case "$1" in
     '') ;;      # Ignore empty
+    --) break;; # Extra configure options (leave on $@ for later detection)
     -h | -help) usage   ;;
     -gcc)       useGcc  ;;
 
@@ -128,7 +118,7 @@ fi
 FFTW_SOURCE_DIR=$sourceBASE/$fftwPACKAGE
 FFTW_ARCH_PATH=$installBASE/$fftwPACKAGE
 
-if [ -r "$FFTW_ARCH_PATH/lib$WM_COMPILER_LIB_ARCH/libfftw3.so" ]
+if [ -r "$FFTW_ARCH_PATH/lib$WM_COMPILER_LIB_ARCH/libfftw3.$SO" ]
 then
     echo "Already has FFTW shared library"
 else
@@ -136,6 +126,18 @@ else
     echo
 
     (
+        # Configuration options:
+        unset configOpt
+
+        # Additional configure options
+        if [ "$1" = "--" ]
+        then
+            shift
+            configOpt="$configOpt $@"
+        fi
+
+        # End of configuration options
+        # ----------------------------
         buildDIR=$buildBASE/$fftwPACKAGE
 
         cd $FFTW_SOURCE_DIR || exit 1
@@ -152,6 +154,7 @@ else
             --libdir=$FFTW_ARCH_PATH/lib$WM_COMPILER_LIB_ARCH \
             --enable-shared --disable-static \
             --disable-fortran \
+            $configOpt \
         && set +x \
         && make -j $WM_NCOMPPROCS \
         && make install \

makeGcc

@@ -7,20 +7,8 @@
 #    \\/     M anipulation  | Copyright (C) 2016-2017 OpenCFD Ltd.
 #------------------------------------------------------------------------------
 # License
-#     This file is part of OpenFOAM.
-#
-#     OpenFOAM is free software: you can redistribute it and/or modify it
-#     under the terms of the GNU General Public License as published by
-#     the Free Software Foundation, either version 3 of the License, or
-#     (at your option) any later version.
-#
-#     OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
-#     ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
-#     FITNESS FOR A PARTICULAR PURPOSE.  See the GNU General Public License
-#     for more details.
-#
-#     You should have received a copy of the GNU General Public License
-#     along with OpenFOAM.  If not, see <http://www.gnu.org/licenses/>.
+#     This file is part of OpenFOAM, licensed under GNU General Public License
+#     <http://www.gnu.org/licenses/>.
 #
 # Script
 #     makeGcc
@@ -51,12 +39,13 @@ cd ${0%/*} && wmakeCheckPwd "$WM_THIRD_PARTY_DIR" 2>/dev/null || {
 }
 . etc/tools/ThirdPartyFunctions
 #------------------------------------------------------------------------------
+unset GMP_ARCH_PATH MPFR_ARCH_PATH                                  # Purge old
 
 [ "${WM_COMPILER#Gcc}" = "$WM_COMPILER" ] && WM_COMPILER=Gcc        # Force gcc
 WM_COMPILER_TYPE=ThirdParty                # Ensure we get the correct settings
 
 # Default GCC, mpfr, gmp and mpc versions from OpenFOAM etc/config.sh file:
-_foamEtc config.sh/compiler
+_foamConfig compiler
 
 gmpPACKAGE=${gmp_version:-gmp-system}
 mpfrPACKAGE=${mpfr_version:-mpfr-system}
@@ -111,12 +100,15 @@ do
         gmpPACKAGE="gmp-system"
         mpfrPACKAGE="mpfr-system"
         mpcPACKAGE="mpc-system"
+        unset GMP_ARCH_PATH MPFR_ARCH_PATH
         ;;
     gmp-[4-9]* | gmp-system)
         gmpPACKAGE="${1%%/}"
+        unset GMP_ARCH_PATH
         ;;
     mpfr-[2-9]* | mpfr-system)
         mpfrPACKAGE="${1%%/}"
+        unset MPFR_ARCH_PATH
         ;;
     mpc-[0-9]* | mpc-system)
         mpcPACKAGE="${1%%/}"
@@ -181,7 +173,7 @@ addLib()
 # Build GMP
 # ================
 echo "---------------"
-if [ -d $GMP_ARCH_PATH ]
+if [ -d "$GMP_ARCH_PATH" ]
 then
     echo "Already built: $gmpPACKAGE"
 elif _foamIsSystem $GMP_ARCH_PATH

makeGperftools

@@ -4,23 +4,11 @@
 # \\      /  F ield         | OpenFOAM: The Open Source CFD Toolbox
 #  \\    /   O peration     |
 #   \\  /    A nd           | Copyright (C) 2012 OpenFOAM Foundation
-#    \\/     M anipulation  | Copyright (C) 2016-2017 OpenCFD Ltd.
+#    \\/     M anipulation  | Copyright (C) 2016-2018 OpenCFD Ltd.
 #------------------------------------------------------------------------------
 # License
-#     This file is part of OpenFOAM.
-#
-#     OpenFOAM is free software: you can redistribute it and/or modify it
-#     under the terms of the GNU General Public License as published by
-#     the Free Software Foundation, either version 3 of the License, or
-#     (at your option) any later version.
-#
-#     OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
-#     ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
-#     FITNESS FOR A PARTICULAR PURPOSE.  See the GNU General Public License
-#     for more details.
-#
-#     You should have received a copy of the GNU General Public License
-#     along with OpenFOAM.  If not, see <http://www.gnu.org/licenses/>.
+#     This file is part of OpenFOAM, licensed under GNU General Public License
+#     <http://www.gnu.org/licenses/>.
 #
 # Script
 #     makeGperftools
@@ -41,7 +29,7 @@ cd ${0%/*} && wmakeCheckPwd "$WM_THIRD_PARTY_DIR" 2>/dev/null || {
 #------------------------------------------------------------------------------
 
 # Gperftools version from OpenFOAM etc/config.sh file:
-_foamEtc config.sh/gperftools
+_foamConfig gperftools
 
 gperftoolsPACKAGE=${gperftools_version:-gperftools-system}
 
@@ -63,9 +51,7 @@ USAGE
     exit 1
 }
 #------------------------------------------------------------------------------
-# Compiler settings for CMake/configure
-[ -n "$WM_CC" ]  && export CC="$WM_CC"
-[ -n "$WM_CXX" ] && export CXX="$WM_CXX"
+exportCompiler          # Compiler info for CMake/configure
 
 # Parse options
 while [ "$#" -gt 0 ]

makeKAHIP

@@ -0,0 +1,198 @@
+#!/bin/sh
+#------------------------------------------------------------------------------
+# =========                 |
+# \\      /  F ield         | OpenFOAM: The Open Source CFD Toolbox
+#  \\    /   O peration     |
+#   \\  /    A nd           | Copyright (C) 2017-2018 OpenCFD Ltd.
+#    \\/     M anipulation  |
+#------------------------------------------------------------------------------
+# License
+#     This file is part of OpenFOAM, licensed under GNU General Public License
+#     <http://www.gnu.org/licenses/>.
+#
+# Script
+#     makeKAHIP
+#
+# Description
+#     Build the KaHIP library (int32 only).
+#
+# ----------------------------------------------
+# NO USER-CONFIGURABLE SETTINGS WITHIN THIS FILE
+#------------------------------------------------------------------------------
+# Dynamic library endings (default is .so)
+[ "$(uname -s)" = Darwin ] && SO=dylib || SO=so
+
+# Short-circuit test for an installation
+if [ "$1" = "-test" ]
+then
+    [ "$#" -eq 2 ] || { echo "${0##*/} -test : needs 1 argument"; exit 1; }
+    dir="$2" # <- KAHIP_ARCH_PATH
+    if [ -d "$dir/include" ]
+    then
+        for lib in \
+            $FOAM_EXT_LIBBIN/libkahip.$SO \
+            $dir/lib/libkahip.a \
+            $dir/lib/libkahip.$SO \
+            $dir/lib$WM_COMPILER_LIB_ARCH/libkahip.a \
+            $dir/lib$WM_COMPILER_LIB_ARCH/libkahip.$SO \
+            ;
+        do
+            if [ -r "$lib" ]
+            then
+                echo "    kahip include: $dir/include"
+                echo "    kahip library: ${lib%/*}"
+                exit 0
+            fi
+        done
+    fi
+    exit 2
+fi
+#------------------------------------------------------------------------------
+# Run from third-party directory only
+cd ${0%/*} && wmakeCheckPwd "$WM_THIRD_PARTY_DIR" 2>/dev/null || {
+    echo "Error (${0##*/}) : not located in \$WM_THIRD_PARTY_DIR"
+    echo "    Check your OpenFOAM environment and installation"
+    exit 1
+}
+[ -n "$FOAM_EXT_LIBBIN" ] || {
+    echo "Error (${0##*/}) : \$FOAM_EXT_LIBBIN not set"
+    echo "    Check your OpenFOAM environment and installation"
+    exit 1
+}
+. etc/tools/ThirdPartyFunctions
+#------------------------------------------------------------------------------
+_foamConfig kahip
+
+kahipPACKAGE=${KAHIP_VERSION:-kahip-system}
+targetType=libso
+
+#------------------------------------------------------------------------------
+usage()
+{
+    exec 1>&2
+    while [ "$#" -ge 1 ]; do echo "$1"; shift; done
+    /bin/cat<<USAGE
+
+Usage: ${0##*/} [OPTION] [lib|libso] [kahip-VERSION]
+options:
+  -gcc              Force gcc/g++ instead of the values from \$WM_CC, \$WM_CXX
+  -help
+
+* Compile KaHIP
+      $kahipPACKAGE
+
+USAGE
+    exit 1
+}
+#------------------------------------------------------------------------------
+
+# Parse options
+while [ "$#" -gt 0 ]
+do
+    case "$1" in
+    '') ;;      # Ignore empty
+    -h | -help) usage   ;;
+    -gcc)       useGcc  ;;
+
+    lib|libso)
+        targetType="$1"
+        ;;
+
+    kahip-[1-9]* | kahip-git)
+        kahipPACKAGE="${1%%/}"
+        unset KAHIP_ARCH_PATH  # Avoid inconsistency
+        ;;
+    *)
+        die "unknown option/argument: '$1'"
+        ;;
+    esac
+    shift
+done
+
+[ -n "$kahipPACKAGE" ] || die "The kahip-VERSION was not specified"
+
+# Nothing to build
+if _foamIsNone $kahipPACKAGE
+then
+    echo "Using kahip-none (skip ThirdParty build of KAHIP)"
+    exit 0
+elif _foamIsSystem $kahipPACKAGE
+then
+    echo "Using kahip-system"
+    exit 0
+fi
+
+requireWMakeToolchain
+
+#------------------------------------------------------------------------------
+#
+# Build KaHIP
+#
+#   KAHIP_ARCH_PATH  : installation directory
+#   KAHIP_SOURCE_DIR : location of the original sources
+
+KAHIP_SOURCE_DIR=$sourceBASE/$kahipPACKAGE
+KAHIP_ARCH_PATH=$installBASE/$kahipPACKAGE
+
+[ -d "$KAHIP_SOURCE_DIR" ] || {
+    echo "Missing sources: '$kahipPACKAGE'"
+    exit 1
+}
+
+#
+# Manual installation
+#
+install()
+{
+    # Ensure a clean build next time
+    wclean
+
+    local bindir=$KAHIP_ARCH_PATH/bin
+    local incdir=$KAHIP_ARCH_PATH/include
+    local libdir=$KAHIP_ARCH_PATH/lib$WM_COMPILER_LIB_ARCH
+
+    mkdir -m 0755 -p $incdir
+
+    /bin/cp -pv \
+        $KAHIP_SOURCE_DIR/interface/kaHIP_interface.h \
+        $incdir
+}
+
+echo "Starting build: $kahipPACKAGE ($targetType)"
+echo
+(
+    cd $KAHIP_SOURCE_DIR/lib || exit 1
+    export GIT_DIR=$KAHIP_SOURCE_DIR/.git # Mask seeing our own git-repo
+
+    rm -rf $KAHIP_ARCH_PATH
+    rm -f $FOAM_EXT_LIBBIN/libkahip.$SO
+
+    libdir=$KAHIP_ARCH_PATH/lib$WM_COMPILER_LIB_ARCH
+
+    cpMakeFiles kahip 2>/dev/null
+
+    if [ -e ../interface -a ! -e interface ]
+    then
+        ln -s ../interface interface
+    fi
+
+    # Place static libraries in sub-directory:
+    if [ "$targetType" = lib ]
+    then
+        mkdir -m 0755 -p $libdir 2>/dev/null
+        export FOAM_EXT_LIBBIN=$libdir
+    fi
+
+    # Location of lib sources for wmake
+    export KAHIP_LIB_SRC=$PWD
+
+    wmake -j $WM_NCOMPPROCS -s $targetType \
+    && echo "Built: kahip" \
+    && install
+) || {
+    echo "Error building: kahip"
+    exit 1
+}
+
+
+#------------------------------------------------------------------------------

makeLLVM

@@ -4,23 +4,11 @@
 # \\      /  F ield         | OpenFOAM: The Open Source CFD Toolbox
 #  \\    /   O peration     |
 #   \\  /    A nd           | Copyright (C) 2011-2016 OpenFOAM Foundation
-#    \\/     M anipulation  | Copyright (C) 2016-2017 OpenCFD Ltd.
+#    \\/     M anipulation  | Copyright (C) 2016-2018 OpenCFD Ltd.
 #------------------------------------------------------------------------------
 # License
-#     This file is part of OpenFOAM.
-#
-#     OpenFOAM is free software: you can redistribute it and/or modify it
-#     under the terms of the GNU General Public License as published by
-#     the Free Software Foundation, either version 3 of the License, or
-#     (at your option) any later version.
-#
-#     OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
-#     ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
-#     FITNESS FOR A PARTICULAR PURPOSE.  See the GNU General Public License
-#     for more details.
-#
-#     You should have received a copy of the GNU General Public License
-#     along with OpenFOAM.  If not, see <http://www.gnu.org/licenses/>.
+#     This file is part of OpenFOAM, licensed under GNU General Public License
+#     <http://www.gnu.org/licenses/>.
 #
 # Script
 #     makeLLVM
@@ -35,12 +23,16 @@
 #    For example, when building from tar files (version 4.0.0)
 #
 #    1) Unpack LLVM:
-#        tar -xJf llvm-4.0.0.src.tar.xz
-#        mv llvm-4.0.0.src  llvm-4.0.0
+#        tar -xJf llvm-4.0.1.src.tar.xz
+#        mv llvm-4.0.1.src  llvm-4.0.1
 #
 #    2) Unpack Clang (also know as cfe):
-#        tar -xJf cfe-4.0.0.src.tar.xz
-#        mv cfe-4.0.0.src  llvm-4.0.0/tools/clang
+#        tar -xJf cfe-4.0.1.src.tar.xz
+#        mv cfe-4.0.1.src  llvm-4.0.1/tools/clang
+#
+#    3) Unpack openmp (optional):
+#        tar -xJf openmp-4.0.1.src.tar.xz
+#        mv openmp-4.0.1.src  llvm-4.0.1/tools/openmp
 #
 # ----------------------------------------------
 # NO USER-CONFIGURABLE SETTINGS WITHIN THIS FILE
@@ -58,7 +50,7 @@ cd ${0%/*} && wmakeCheckPwd "$WM_THIRD_PARTY_DIR" 2>/dev/null || {
 WM_COMPILER_TYPE=ThirdParty                # Ensure we get the correct settings
 
 # LLVM/Clang version from OpenFOAM etc/config.sh file:
-_foamEtc config.sh/compiler
+_foamConfig compiler
 
 llvmPACKAGE=$clang_version
 
@@ -80,10 +72,8 @@ options:
 USAGE
     exit 1
 }
-#-----------------------------------------------------------------------------
-# Compiler settings for CMake/configure
-[ -n "$WM_CC" ]  && export CC="$WM_CC"
-[ -n "$WM_CXX" ] && export CXX="$WM_CXX"
+#------------------------------------------------------------------------------
+exportCompiler          # Compiler info for CMake/configure
 
 # Parse options
 while [ "$#" -gt 0 ]
@@ -172,9 +162,17 @@ else
     echo "Starting build: $llvmPACKAGE (using cmake)"
     echo
     (
+        # Configuration options:
+        unset configOpt
+
         cd $LLVM_SOURCE_DIR || exit 1
         export GIT_DIR=$PWD/.git # Mask seeing our own git-repo
 
+        if [ -f tools/openmp/CMakeLists.txt ]
+        then
+            configOpt="$configOpt -DLLVM_TOOL_OPENMP_BUILD=ON"
+        fi
+
         rm -rf $LLVM_BUILD_DIR
         mkdir -p $LLVM_BUILD_DIR
         cd $LLVM_BUILD_DIR
@@ -186,6 +184,7 @@ else
             -DCMAKE_INSTALL_PREFIX=$LLVM_ARCH_PATH \
             -DCMAKE_BUILD_TYPE=Release \
             -DBUILD_SHARED_LIBS=ON \
+            $configOpt \
             $LLVM_SOURCE_DIR \
         && set +x \
         && make -j $WM_NCOMPPROCS \

makeMETIS

@@ -0,0 +1,190 @@
+#!/bin/sh
+#------------------------------------------------------------------------------
+# =========                 |
+# \\      /  F ield         | OpenFOAM: The Open Source CFD Toolbox
+#  \\    /   O peration     |
+#   \\  /    A nd           | Copyright (C) 2017-2018 OpenCFD Ltd.
+#    \\/     M anipulation  |
+#------------------------------------------------------------------------------
+# License
+#     This file is part of OpenFOAM, licensed under GNU General Public License
+#     <http://www.gnu.org/licenses/>.
+#
+# Script
+#     makeMETIS
+#
+# Description
+#     Build script for METIS
+#
+# ----------------------------------------------
+# NO USER-CONFIGURABLE SETTINGS WITHIN THIS FILE
+#------------------------------------------------------------------------------
+# Dynamic library endings (default is .so)
+[ "$(uname -s)" = Darwin ] && SO=dylib || SO=so
+
+# Short-circuit test for an installation
+if [ "$1" = "-test" ]
+then
+    [ "$#" -eq 2 ] || { echo "${0##*/} -test : needs 1 argument"; exit 1; }
+    dir="$2" # <- METIS_ARCH_PATH
+    if [ -d "$dir/include" ]
+    then
+        for lib in \
+            $FOAM_EXT_LIBBIN/libmetis.$SO \
+            $dir/lib/libmetis.a \
+            $dir/lib/libmetis.$SO \
+            $dir/lib$WM_COMPILER_LIB_ARCH/libmetis.a \
+            $dir/lib$WM_COMPILER_LIB_ARCH/libmetis.$SO \
+            ;
+        do
+            if [ -r "$lib" ]
+            then
+                echo "    metis include: $dir/include"
+                echo "    metis library: ${lib%/*}"
+                exit 0
+            fi
+        done
+    fi
+    exit 2
+fi
+#------------------------------------------------------------------------------
+# Run from third-party directory only
+cd ${0%/*} && wmakeCheckPwd "$WM_THIRD_PARTY_DIR" 2>/dev/null || {
+    echo "Error (${0##*/}) : not located in \$WM_THIRD_PARTY_DIR"
+    echo "    Check your OpenFOAM environment and installation"
+    exit 1
+}
+[ -n "$FOAM_EXT_LIBBIN" ] || {
+    echo "Error (${0##*/}) : \$FOAM_EXT_LIBBIN not set"
+    echo "    Check your OpenFOAM environment and installation"
+    exit 1
+}
+. etc/tools/ThirdPartyFunctions
+#------------------------------------------------------------------------------
+_foamConfig metis
+
+metisPACKAGE=${METIS_VERSION:-metis-system}
+targetType=libso
+
+#------------------------------------------------------------------------------
+usage() {
+    exec 1>&2
+    while [ "$#" -ge 1 ]; do echo "$1"; shift; done
+    cat<<USAGE
+
+usage: ${0##*/} [OPTION] [lib|libso] [METIS-VERSION]
+options:
+  -gcc              Force gcc/g++ instead of the values from \$WM_CC, \$WM_CXX
+  -help
+
+* build METIS with
+      ${metisPACKAGE:-'unspecified metis version'}
+
+USAGE
+    exit 1
+}
+#------------------------------------------------------------------------------
+exportCompiler          # Compiler info for CMake/configure
+
+# Parse options
+while [ "$#" -gt 0 ]
+do
+    case "$1" in
+    '') ;;      # Ignore empty
+    -h | -help) usage   ;;
+    -gcc)       useGcc  ;;
+
+    lib|libso)
+        targetType="$1"
+        ;;
+
+    metis-[0-9]*)
+        metisPACKAGE="${1%%/}"
+        unset METIS_ARCH_PATH  # Avoid inconsistency
+        ;;
+    *)
+        die "unknown option/argument: '$1'"
+        ;;
+    esac
+    shift
+done
+
+[ -n "$metisPACKAGE" ] || die "The metis-VERSION was not specified"
+
+# Nothing to build
+if _foamIsNone $metisPACKAGE
+then
+    echo "Using metis-none (skip ThirdParty build of METIS)"
+    exit 0
+elif _foamIsSystem $metisPACKAGE
+then
+    echo "Using metis-system"
+    exit 0
+fi
+
+#------------------------------------------------------------------------------
+#
+# Build METIS
+#
+#   METIS_ARCH_PATH  : installation directory
+#   METIS_SOURCE_DIR : location of the original sources
+
+METIS_SOURCE_DIR=$sourceBASE/$metisPACKAGE
+: ${METIS_ARCH_PATH:=$installBASE$WM_PRECISION_OPTION$WM_LABEL_OPTION/$metisPACKAGE}
+
+[ -d "$METIS_SOURCE_DIR" ] || {
+    echo "Missing sources: '$metisPACKAGE'"
+    exit 1
+}
+
+#
+# Manual installation (of library)
+#
+install()
+{
+    local libdir=$METIS_ARCH_PATH/lib
+
+    if [ "$targetType" = libso ]
+    then
+        \mv $libdir/libmetis.$SO $FOAM_EXT_LIBBIN
+        rmdir $libdir 2>/dev/null # Failed rmdir is uncritical
+
+        echo "Installing: $FOAM_EXT_LIBBIN/libmetis.$SO"
+    fi
+    return 0
+}
+
+echo "Starting build: $metisPACKAGE ($targetType)"
+echo
+(
+    # Configuration options:
+    unset configOpt
+    if [ "$targetType" = libso ]
+    then
+        configOpt="shared=1"
+    fi
+
+    cd $METIS_SOURCE_DIR || exit 1
+    export GIT_DIR=$PWD/.git # Mask seeing our own git-repo
+
+    rm -rf $METIS_ARCH_PATH
+    rm -f $FOAM_EXT_LIBBIN/libmetis.$SO
+
+    # Adjust metis integer size to match OpenFOAM label-size
+    sed -i -e 's=\(#define IDXTYPEWIDTH\).*=\1 '$WM_LABEL_SIZE'=' \
+        include/metis.h
+
+    # No config option for the library location.
+    # - build normally and use mv to relocate it
+
+    make config $configOpt prefix=$METIS_ARCH_PATH \
+    && make -j $WM_NCOMPPROCS install \
+    && echo "Built: metis" \
+    && install
+) || {
+    echo "Error building: metis"
+    exit 1
+}
+
+
+#------------------------------------------------------------------------------

makeMGridGen

@@ -3,24 +3,12 @@
 # =========                 |
 # \\      /  F ield         | OpenFOAM: The Open Source CFD Toolbox
 #  \\    /   O peration     |
-#   \\  /    A nd           | Copyright (C) 2017 OpenCFD Ltd.
+#   \\  /    A nd           | Copyright (C) 2017-2018 OpenCFD Ltd.
 #    \\/     M anipulation  |
 #------------------------------------------------------------------------------
 # License
-#     This file is part of OpenFOAM.
-#
-#     OpenFOAM is free software: you can redistribute it and/or modify it
-#     under the terms of the GNU General Public License as published by
-#     the Free Software Foundation, either version 3 of the License, or
-#     (at your option) any later version.
-#
-#     OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
-#     ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
-#     FITNESS FOR A PARTICULAR PURPOSE.  See the GNU General Public License
-#     for more details.
-#
-#     You should have received a copy of the GNU General Public License
-#     along with OpenFOAM.  If not, see <http://www.gnu.org/licenses/>.
+#     This file is part of OpenFOAM, licensed under GNU General Public License
+#     <http://www.gnu.org/licenses/>.
 #
 # Script
 #     makeMGridGen
@@ -42,7 +30,7 @@ wmakeCheckPwd "$WM_THIRD_PARTY_DIR" || {
 #------------------------------------------------------------------------------
 
 # mgridgen version from OpenFOAM etc/config.sh file:
-_foamEtc config.sh/mgridgen
+_foamConfig mgridgen
 
 mgridgenPACKAGE=${MGRIDGEN_VERSION:-mgridgen-none}
 
@@ -65,9 +53,7 @@ USAGE
 }
 
 #------------------------------------------------------------------------------
-# Compiler settings for CMake/configure
-[ -n "$WM_CC" ]  && export CC="$WM_CC"
-[ -n "$WM_CXX" ] && export CXX="$WM_CXX"
+exportCompiler          # Compiler info for CMake/configure
 
 # Parse options
 while [ "$#" -gt 0 ]
@@ -91,7 +77,7 @@ done
 
 [ -n "$mgridgenPACKAGE" ] || die "The mgridgen-VERSION was not specified"
 
-# nothing to build
+# Nothing to build
 if _foamIsNone "$mgridgenPACKAGE"
 then
     echo "Using mgridgen-none (skip ThirdParty build of MGridGen)"
@@ -124,23 +110,23 @@ echo
 #
 install()
 {
-   echo "Install into $MGRIDGEN_ARCH_PATH"
+    echo "Install into $MGRIDGEN_ARCH_PATH"
 
-   local bindir=$MGRIDGEN_ARCH_PATH/bin
-   local incdir=$MGRIDGEN_ARCH_PATH/include
-   local libdir=$MGRIDGEN_ARCH_PATH/lib$WM_COMPILER_LIB_ARCH
+    local bindir=$MGRIDGEN_ARCH_PATH/bin
+    local incdir=$MGRIDGEN_ARCH_PATH/include
+    local libdir=$MGRIDGEN_ARCH_PATH/lib$WM_COMPILER_LIB_ARCH
 
-   for dir in $MGRIDGEN_ARCH_PATH $bindir $incdir $libdir
-   do
-       mkdir -m 0755 -p $dir
-   done
+    for dir in $MGRIDGEN_ARCH_PATH $bindir $incdir $libdir
+    do
+        mkdir -m 0755 -p $dir
+    done
 
-   cp -vf mgridgen.h   $incdir
-   cp -vf libmgrid.a   $libdir
-   cp -vf mgridgen     $bindir
+    cp -vf mgridgen.h   $incdir
+    cp -vf libmgrid.a   $libdir
+    cp -vf mgridgen     $bindir
 
-   chmod -R 0644 $incdir/* $libdir/*
-   chmod -R 0755 $bindir/*
+    chmod -R 0644 $incdir/* $libdir/*
+    chmod -R 0755 $bindir/*
 }
 
 

makeMPICH

@@ -3,24 +3,12 @@
 # =========                 |
 # \\      /  F ield         | OpenFOAM: The Open Source CFD Toolbox
 #  \\    /   O peration     |
-#   \\  /    A nd           | Copyright (C) 2017 OpenCFD Ltd.
+#   \\  /    A nd           | Copyright (C) 2017-2018 OpenCFD Ltd.
 #    \\/     M anipulation  |
 #------------------------------------------------------------------------------
 # License
-#     This file is part of OpenFOAM.
-#
-#     OpenFOAM is free software: you can redistribute it and/or modify it
-#     under the terms of the GNU General Public License as published by
-#     the Free Software Foundation, either version 3 of the License, or
-#     (at your option) any later version.
-#
-#     OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
-#     ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
-#     FITNESS FOR A PARTICULAR PURPOSE.  See the GNU General Public License
-#     for more details.
-#
-#     You should have received a copy of the GNU General Public License
-#     along with OpenFOAM.  If not, see <http://www.gnu.org/licenses/>.
+#     This file is part of OpenFOAM, licensed under GNU General Public License
+#     <http://www.gnu.org/licenses/>.
 #
 # Script
 #     makeMPICH
@@ -31,12 +19,15 @@
 # ----------------------------------------------
 # NO USER-CONFIGURABLE SETTINGS WITHIN THIS FILE
 #------------------------------------------------------------------------------
+# Dynamic library endings (default is .so)
+[ "$(uname -s)" = Darwin ] && SO=dylib || SO=so
+
 # Short-circuit test for an installation
 if [ "$1" = "-test" ]
 then
     [ "$#" -eq 2 ] || { echo "${0##*/} -test : needs 1 argument"; exit 1; }
     dir="$2" # <- MPI_ARCH_PATH
-    if [ -r "$dir/lib$WM_COMPILER_LIB_ARCH/libmpich.so" ]
+    if [ -r "$dir/lib$WM_COMPILER_LIB_ARCH/libmpich.$SO" ]
     then
         echo "Have mpich shared library (${dir##*/})"
         exit 0
@@ -67,7 +58,7 @@ _foamAddPath() { true; }
 WM_MPLIB=MPICH                                  # Ensure we get the correct MPI
 
 # mpich version from OpenFOAM etc/config.sh file:
-_foamEtc config.sh/mpi
+_foamConfig mpi
 
 mpiPACKAGE=${FOAM_MPI:-mpich-system}
 
@@ -77,7 +68,7 @@ usage() {
     while [ "$#" -ge 1 ]; do echo "$1"; shift; done
     cat<<USAGE
 
-usage: ${0##*/} [OPTION] [mpich-VERSION]
+usage: ${0##*/} [OPTION] [mpich-VERSION] [-- configure-options]
 options:
   -gcc              force gcc/g++ instead of the values from \$WM_CC, \$WM_CXX
   -help
@@ -89,21 +80,21 @@ USAGE
     exit 1
 }
 #------------------------------------------------------------------------------
-# Compiler settings for CMake/configure
-[ -n "$WM_CC" ]  && export CC="$WM_CC"
-[ -n "$WM_CXX" ] && export CXX="$WM_CXX"
+exportCompiler          # Compiler info for CMake/configure
 
 # Parse options
 while [ "$#" -gt 0 ]
 do
     case "$1" in
     '') ;;      # Ignore empty
+    --) break;; # Extra configure options (leave on $@ for later detection)
     -h | -help) usage   ;;
     -gcc)       useGcc  ;;
 
     mpich*)
         mpiPACKAGE="${1%%/}"
         ;;
+
     *)
         die "unknown option/argument: '$1'"
         ;;
@@ -134,7 +125,7 @@ fi
 MPI_SOURCE_DIR=$sourceBASE/$mpiPACKAGE
 MPI_ARCH_PATH=$installBASE/$mpiPACKAGE
 
-if [ -r "$MPI_ARCH_PATH/lib_ARCH/libmpi.so" ]
+if [ -r "$MPI_ARCH_PATH/lib_ARCH/libmpi.$SO" ]
 then
     echo "Already has shared library"
 elif [ -r "$MPI_ARCH_PATH/lib/libmpi.a" ]
@@ -145,9 +136,17 @@ else
     echo
 
     (
-        # configuration options:
+        # Configuration options:
         unset configOpt
-        # end of configuration options
+
+        # Additional configure options
+        if [ "$1" = "--" ]
+        then
+            shift
+            configOpt="$configOpt $@"
+        fi
+
+        # End of configuration options
         # ----------------------------
 
         cd $MPI_SOURCE_DIR || exit 1

makeMesa

@@ -3,24 +3,12 @@
 # =========                 |
 # \\      /  F ield         | OpenFOAM: The Open Source CFD Toolbox
 #  \\    /   O peration     |
-#   \\  /    A nd           | Copyright (C) 2016-2017 OpenCFD Ltd.
+#   \\  /    A nd           | Copyright (C) 2016-2018 OpenCFD Ltd.
 #    \\/     M anipulation  |
 #------------------------------------------------------------------------------
 # License
-#     This file is part of OpenFOAM.
-#
-#     OpenFOAM is free software: you can redistribute it and/or modify it
-#     under the terms of the GNU General Public License as published by
-#     the Free Software Foundation, either version 3 of the License, or
-#     (at your option) any later version.
-#
-#     OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
-#     ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
-#     FITNESS FOR A PARTICULAR PURPOSE.  See the GNU General Public License
-#     for more details.
-#
-#     You should have received a copy of the GNU General Public License
-#     along with OpenFOAM.  If not, see <http://www.gnu.org/licenses/>.
+#     This file is part of OpenFOAM, licensed under GNU General Public License
+#     <http://www.gnu.org/licenses/>.
 #
 # Script
 #     makeMesa
@@ -49,7 +37,7 @@ cd ${0%/*} && wmakeCheckPwd "$WM_THIRD_PARTY_DIR" 2>/dev/null || {
 unset vtk_version mesa_version                           # Purge current values
 
 # mesa version from OpenFOAM etc/config.sh file:
-_foamEtc config.sh/vtk
+_foamConfig vtk
 
 mesaPACKAGE=$mesa_version
 
@@ -59,7 +47,7 @@ usage() {
     while [ "$#" -ge 1 ]; do echo "$1"; shift; done
     cat<<USAGE
 
-usage: ${0##*/} [OPTION] mesa-VERSION
+usage: ${0##*/} [OPTION] mesa-VERSION [-- configure-options]
 options:
   -gcc              Force gcc/g++ instead of the values from \$WM_CC, \$WM_CXX
   -help
@@ -71,9 +59,7 @@ USAGE
     exit 1
 }
 #------------------------------------------------------------------------------
-# Compiler settings for CMake/configure
-[ -n "$WM_CC" ]  && export CC="$WM_CC"
-[ -n "$WM_CXX" ] && export CXX="$WM_CXX"
+exportCompiler          # Compiler info for CMake/configure
 
 # Non-standard location for clang?
 case "$WM_COMPILER_TYPE-$WM_COMPILER" in
@@ -90,6 +76,7 @@ while [ "$#" -gt 0 ]
 do
     case "$1" in
     '') ;;      # Ignore empty
+    --) break;; # Extra configure options (leave on $@ for later detection)
     -h | -help) usage   ;;
     -gcc)
         useGcc
@@ -98,6 +85,7 @@ do
     mesa-*)
         mesaPACKAGE="${1%%/}"
         ;;
+
     *)
         die "unknown option/argument: '$1'"
         ;;
@@ -127,7 +115,7 @@ then
         exit 2
     }
 
-    # root installation directory
+    # Root installation directory
     thirdPartyClang=${thirdPartyClang%/bin/clang}
 
     [ -d "$thirdPartyClang" ] || {
@@ -160,7 +148,7 @@ adjustMESA()
 }
 
 (
-    # configuration options:
+    # Configuration options:
     unset configOpt
 
     if [ -d "$thirdPartyClang" ]
@@ -168,14 +156,21 @@ adjustMESA()
         configOpt="$configOpt --with-llvm-prefix=$thirdPartyClang"
     fi
 
-    # end of configuration options
+    # Additional configure options
+    if [ "$1" = "--" ]
+    then
+        shift
+        configOpt="$configOpt $@"
+    fi
+
+    # End of configuration options
     # ----------------------------
     buildDIR=$buildBASE/$mesaPACKAGE
 
     cd $MESA_SOURCE_DIR || exit 1
     export GIT_DIR=$PWD/.git # Mask seeing our own git-repo
 
-    # remove any existing build
+    # Remove any existing build
     rm -rf $MESA_ARCH_PATH
     rm -rf $buildDIR
     mkdir -p $buildDIR
@@ -191,7 +186,7 @@ adjustMESA()
     fi
     echo "----"
 
-    # possibly for older mesa versions (see paraview wiki)
+    # Possibly for older mesa versions (see paraview wiki)
     # CXXFLAGS="-O2 -DDEFAULT_SOFTWARE_DEPTH_BITS=31" \
     # CFLAGS="-O2 -DDEFAULT_SOFTWARE_DEPTH_BITS=31" \
 

makeOPENMPI

@@ -3,24 +3,12 @@
 # =========                 |
 # \\      /  F ield         | OpenFOAM: The Open Source CFD Toolbox
 #  \\    /   O peration     |
-#   \\  /    A nd           | Copyright (C) 2017 OpenCFD Ltd.
+#   \\  /    A nd           | Copyright (C) 2017-2018 OpenCFD Ltd.
 #    \\/     M anipulation  |
 #------------------------------------------------------------------------------
 # License
-#     This file is part of OpenFOAM.
-#
-#     OpenFOAM is free software: you can redistribute it and/or modify it
-#     under the terms of the GNU General Public License as published by
-#     the Free Software Foundation, either version 3 of the License, or
-#     (at your option) any later version.
-#
-#     OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
-#     ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
-#     FITNESS FOR A PARTICULAR PURPOSE.  See the GNU General Public License
-#     for more details.
-#
-#     You should have received a copy of the GNU General Public License
-#     along with OpenFOAM.  If not, see <http://www.gnu.org/licenses/>.
+#     This file is part of OpenFOAM, licensed under GNU General Public License
+#     <http://www.gnu.org/licenses/>.
 #
 # Script
 #     makeOPENMPI
@@ -31,12 +19,15 @@
 # ----------------------------------------------
 # NO USER-CONFIGURABLE SETTINGS WITHIN THIS FILE
 #------------------------------------------------------------------------------
+# Dynamic library endings (default is .so)
+[ "$(uname -s)" = Darwin ] && SO=dylib || SO=so
+
 # Short-circuit test for an installation
 if [ "$1" = "-test" ]
 then
     [ "$#" -eq 2 ] || { echo "${0##*/} -test : needs 1 argument"; exit 1; }
     dir="$2" # <- MPI_ARCH_PATH
-    if [ -r "$dir/lib$WM_COMPILER_LIB_ARCH/libmpi.so" ]
+    if [ -r "$dir/lib$WM_COMPILER_LIB_ARCH/libmpi.$SO" ]
     then
         echo "    Have openmpi shared library (${dir##*/})"
         exit 0
@@ -67,7 +58,7 @@ _foamAddPath() { true; }
 WM_MPLIB=OPENMPI                                # Ensure we get the correct MPI
 
 # openmpi version from OpenFOAM etc/config.sh file:
-_foamEtc config.sh/mpi
+_foamConfig mpi
 
 mpiPACKAGE=${FOAM_MPI:-openmpi-system}
 
@@ -77,9 +68,12 @@ usage() {
     while [ "$#" -ge 1 ]; do echo "$1"; shift; done
     cat<<USAGE
 
-usage: ${0##*/} [OPTION] [openmpi-VERSION]
+usage: ${0##*/} [OPTION] [openmpi-VERSION] [-- configure-options]
 options:
-  -gcc              force gcc/g++ instead of the values from \$WM_CC, \$WM_CXX
+  -gcc          Force gcc/g++ instead of the values from \$WM_CC, \$WM_CXX
+  -memcheck     Configure with --enable-memcheck (requires valgrind.h)
+  -threaded     Configure with --enable-mpi-thread-multiple
+  -no-threaded  Configure with --disable-mpi-thread-multiple
   -help
 
 * build openmpi with
@@ -89,21 +83,26 @@ USAGE
     exit 1
 }
 #------------------------------------------------------------------------------
-# Compiler settings for CMake/configure
-[ -n "$WM_CC" ]  && export CC="$WM_CC"
-[ -n "$WM_CXX" ] && export CXX="$WM_CXX"
+exportCompiler          # Compiler info for CMake/configure
+
+unset optMemchecker optThreaded
 
 # Parse options
 while [ "$#" -gt 0 ]
 do
     case "$1" in
     '') ;;      # Ignore empty
+    --) break;; # Extra configure options (leave on $@ for later detection)
     -h | -help) usage   ;;
     -gcc)       useGcc  ;;
+    -memcheck*) optMemchecker=true ;;
+    -thread*)   optThreaded=enable ;;
+    -no-thread*) optThreaded=disable ;;
 
     openmpi-[0-9]* | openmpi_[0-9]* | openmpi-system )
         mpiPACKAGE="${1%%/}"
         ;;
+
     *)
         die "unknown option/argument: '$1'"
         ;;
@@ -134,30 +133,40 @@ fi
 MPI_SOURCE_DIR=$sourceBASE/$mpiPACKAGE
 MPI_ARCH_PATH=$installBASE/$mpiPACKAGE
 
-if [ -r "$MPI_ARCH_PATH/lib$WM_COMPILER_LIB_ARCH/libmpi.so" ]
+if [ -r "$MPI_ARCH_PATH/lib$WM_COMPILER_LIB_ARCH/libmpi.$SO" ]
 then
-    echo "Already has shared library"
+    echo "Already has shared library: $MPI_ARCH_PATH"
 elif [ -r "$MPI_ARCH_PATH/lib$WM_COMPILER_LIB_ARCH/libmpi.a" ]
 then
-    echo "Already has static library"
+    echo "Already has static library: $MPI_ARCH_PATH"
 else
     echo "Starting build: $WM_MPLIB ($mpiPACKAGE)"
     echo
 
     (
-        # configuration options:
+        # Configuration options:
         # Start with GridEngine support - builds without external libraries
         configOpt="--with-sge"
 
-        # Add InfiniBand support
-        ibDir=/usr/local/ofed
-        ibLib=$infbDIR/lib$WM_COMPILER_LIB_ARCH
-        if [ -d "$ibDir" -a -d "$ibLib" ]
+        if [ -n "$optMemchecker" ]
         then
-            configOpt="$configOpt --with-verbs=$ibDir --with-verbs-lib=$ibLib"
+            configOpt="$configOpt --enable-memchecker --with-valgrind"
         fi
 
-        # end of configuration options
+        # --enable-mpi-thread-multiple / --disable-mpi-thread-multiple
+        if [ -n "$optThreaded" ]
+        then
+            configOpt="$configOpt --${optThreaded}-mpi-thread-multiple"
+        fi
+
+        # Additional configure options
+        if [ "$1" = "--" ]
+        then
+            shift
+            configOpt="$configOpt $@"
+        fi
+
+        # End of configuration options
         # ----------------------------
 
         buildDIR=$buildBASE/$mpiPACKAGE
@@ -178,7 +187,6 @@ else
             --disable-orterun-prefix-by-default \
             --enable-shared --disable-static \
             --enable-mpi-fortran=none \
-            --disable-mpi-profile \
             $configOpt \
         && set +x \
         && make -j $WM_NCOMPPROCS \

makeOPENMPI.example

@@ -0,0 +1,14 @@
+#!/bin/sh
+# An example for building OPENMPI with particular settings
+
+openmpi=openmpi-1.10.6
+
+# InfiniBand support
+verbs="--with-verbs=/usr/local/ofed --with-verbs-lib=/usr/local/ofed/lib64"
+# unset verbs
+
+./makeOPENMPI $openmpi -- \
+    $verbs \
+    "$@"
+
+#------------------------------------------------------------------------------

makeParaView

@@ -4,29 +4,17 @@
 # \\      /  F ield         | OpenFOAM: The Open Source CFD Toolbox
 #  \\    /   O peration     |
 #   \\  /    A nd           | Copyright (C) 2011-2016 OpenFOAM Foundation
-#    \\/     M anipulation  | Copyright (C) 2016-2017 OpenCFD Ltd.
+#    \\/     M anipulation  | Copyright (C) 2016-2018 OpenCFD Ltd.
 #------------------------------------------------------------------------------
 # License
-#     This file is part of OpenFOAM.
-#
-#     OpenFOAM is free software: you can redistribute it and/or modify it
-#     under the terms of the GNU General Public License as published by
-#     the Free Software Foundation, either version 3 of the License, or
-#     (at your option) any later version.
-#
-#     OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
-#     ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
-#     FITNESS FOR A PARTICULAR PURPOSE.  See the GNU General Public License
-#     for more details.
-#
-#     You should have received a copy of the GNU General Public License
-#     along with OpenFOAM.  If not, see <http://www.gnu.org/licenses/>.
+#     This file is part of OpenFOAM, licensed under GNU General Public License
+#     <http://www.gnu.org/licenses/>.
 #
 # Script
 #     makeParaView
 #
 # Description
-#     Make and install ParaView 4 or 5.
+#     Make and install ParaView.
 #     The ParaView sources should be located under one of these locations:
 #       - $WM_THIRD_PARTY_DIR/ParaView-VERSION
 #       - $WM_THIRD_PARTY_DIR/ParaView-vVERSION
@@ -49,9 +37,23 @@ cd ${0%/*} && wmakeCheckPwd "$WM_THIRD_PARTY_DIR" 2>/dev/null || {
 unset ParaView_VERSION                                   # Purge current values
 
 # ParaView_VERSION from etc/config.sh file:
-_foamEtc config.sh/paraview
+_foamConfig paraview
+
+# Avoid any potential conflicts (especially if building from git)
+if [ -d "$ParaView_DIR" ]
+then
+    _foamClean PATH "$ParaView_DIR"
+    _foamClean LD_LIBRARY_PATH "$ParaView_DIR"
+fi
+unset ParaView_DIR ParaView_INCLUDE_DIR PV_PLUGIN_PATH
+
+case "$ParaView_VERSION" in
+[Pp]*)
+    ParaView_VERSION="${ParaView_VERSION##*-}"  # Without "ParaView-" prefix
+    ;;
+esac
+ParaView_VERSION="${ParaView_VERSION%%-*}"      # Without suffix (eg, -python)
 
-ParaView_VERSION="${ParaView_VERSION##*-}"               # Without prefix
 
 # Set initial ParaView_MAJOR based on current value of ParaView_VERSION
 setParaViewVersion ${ParaView_VERSION:-none}
@@ -78,6 +80,8 @@ options:
   -mpi              with mpi
   -mpi=N            with max 'N' mpi processes. N=0 for no upper-limit.
   -python           with python
+  -python-include DIR
+                    location of python headers (current: ${PYTHON_INCLUDE:-none})
   -python-lib PATH  path to python library (current: ${PYTHON_LIBRARY:-none})
   -cmake PATH       with cmake from the path given
   -qmake PATH       with the Qt version corresponding to the qmake path given
@@ -113,7 +117,7 @@ For finer control, the build stages can be selected or deselected individually:
 To make a different paraview version, simply specify on the command-line.
 For example,
 
-    ./makeParaview 5.0.1
+    ./makeParaview 5.4.1
 
 Or change the \$WM_PROJECT_DIR/etc/config.sh/paraview settings.
 
@@ -121,9 +125,7 @@ USAGE
     exit 1
 }
 #------------------------------------------------------------------------------
-# Compiler settings for CMake/configure
-[ -n "$WM_CC" ]  && export CC="$WM_CC"
-[ -n "$WM_CXX" ] && export CXX="$WM_CXX"
+exportCompiler          # Compiler info for CMake/configure
 
 # Various building stages
 unset runPATCH runCONFIG runMAKE runINSTALL
@@ -233,6 +235,12 @@ do
     -no-python)
         withPYTHON=false
         ;;
+    -python-include)
+        [ "$#" -ge 2 ] || die "'$1' option requires an argument"
+        withPYTHON=true
+        PYTHON_INCLUDE="${2%%/}"
+        shift
+        ;;
     -python-lib)
         [ "$#" -ge 2 ] || die "'$1' option requires an argument"
         withPYTHON=true
@@ -291,7 +299,7 @@ done
 
 [ -n "$ParaView_VERSION" ] || die "The paraview-VERSION was not specified"
 
-# nothing to build
+# Nothing to build
 if _foamIsNone "$ParaView_VERSION"
 then
     echo "Using paraview-none (skip ThirdParty build of ParaView)"

makeParaView.example

@@ -2,15 +2,21 @@
 # An example for building particular combinations of ParaView with
 # - mpi (0 = no upper-limit on processes)
 # - mesa
+# - python (required for Catalyst)
+#
+# NOTE: must modify etc/config.*/paraview to use this particular version
+# and combination, or use chaining as per etc/config.*/example/paraview
 
 # mesa=mesa-11.2.2
 # mesa=mesa-13.0.3
 mesa=mesa-17.1.1
 
+set -x
 ./makeParaView \
     -mpi=0 \
     -mesa-prefix $WM_THIRD_PARTY_DIR/platforms/$WM_ARCH$WM_COMPILER/$mesa \
-    -suffix mesa \
+    -python \
+    -suffix mesa-mpi-py \
     "$@"
 
 #------------------------------------------------------------------------------

makeQt

@@ -4,23 +4,11 @@
 # \\      /  F ield         | OpenFOAM: The Open Source CFD Toolbox
 #  \\    /   O peration     |
 #   \\  /    A nd           | Copyright (C) 2011 OpenFOAM Foundation
-#    \\/     M anipulation  | Copyright (C) 2016-2017 OpenCFD Ltd.
+#    \\/     M anipulation  | Copyright (C) 2016-2018 OpenCFD Ltd.
 #------------------------------------------------------------------------------
 # License
-#     This file is part of OpenFOAM.
-#
-#     OpenFOAM is free software: you can redistribute it and/or modify it
-#     under the terms of the GNU General Public License as published by
-#     the Free Software Foundation, either version 3 of the License, or
-#     (at your option) any later version.
-#
-#     OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
-#     ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
-#     FITNESS FOR A PARTICULAR PURPOSE.  See the GNU General Public License
-#     for more details.
-#
-#     You should have received a copy of the GNU General Public License
-#     along with OpenFOAM.  If not, see <http://www.gnu.org/licenses/>.
+#     This file is part of OpenFOAM, licensed under GNU General Public License
+#     <http://www.gnu.org/licenses/>.
 #
 # Script
 #     makeQt
@@ -45,7 +33,7 @@ usage() {
     while [ "$#" -ge 1 ]; do echo "$1"; shift; done
     cat<<USAGE
 
-usage: ${0##*/} [OPTION] [qt-VERSION]
+usage: ${0##*/} [OPTION] [qt-VERSION] [-- configure-options]
 options:
   -gcc              Force gcc/g++ instead of the values from \$WM_CC, \$WM_CXX
   -help
@@ -56,17 +44,14 @@ USAGE
     exit 1
 }
 #------------------------------------------------------------------------------
-# Compiler/linker settings for CMake/configure
-[ -n "$WM_CC" ]         &&  export CC="$WM_CC"
-[ -n "$WM_CXX" ]        &&  export CXX="$WM_CXX"
-[ -n "$WM_CFLAGS" ]     &&  export CFLAGS="$WM_CFLAGS"
-[ -n "$WM_CXXFLAGS" ]   &&  export CXXFLAGS="$WM_CXXFLAGS"
+exportCompiler true     # Compiler info + flags for CMake/configure
 
 # Parse options
 while [ "$#" -gt 0 ]
 do
     case "$1" in
     '') ;;      # Ignore empty
+    --) break;; # Extra configure options (leave on $@ for later detection)
     -h | -help) usage   ;;
     -gcc)       useGcc  ;;
 
@@ -75,6 +60,7 @@ do
         qtVERSION="${1%%/}";
         qtVERSION="${qtVERSION##*-}"
         ;;
+
     *)
         die "unknown option/argument: '$1'"
         ;;
@@ -83,7 +69,7 @@ do
 done
 qtPACKAGE=$qtTYPE-$qtVERSION
 
-# nothing to build
+# Nothing to build
 if _foamIsNone "$qtPACKAGE"
 then
     echo "Using qt-none (skip ThirdParty build of QT)"
@@ -134,7 +120,14 @@ else
             ;;
         esac
 
-        # end of configuration options
+        # Additional configure options
+        if [ "$1" = "--" ]
+        then
+            shift
+            configOpt="$configOpt $@"
+        fi
+
+        # End of configuration options
         # ----------------------------
         buildDIR=$buildBASE/$qtPACKAGE
 

makeTecio

@@ -1,198 +0,0 @@
-#!/bin/sh
-#------------------------------------------------------------------------------
-# =========                 |
-# \\      /  F ield         | OpenFOAM: The Open Source CFD Toolbox
-#  \\    /   O peration     |
-#   \\  /    A nd           | Copyright (C) 2016-2017 OpenCFD Ltd.
-#    \\/     M anipulation  |
-#------------------------------------------------------------------------------
-# License
-#     This file is part of OpenFOAM.
-#
-#     OpenFOAM is free software: you can redistribute it and/or modify it
-#     under the terms of the GNU General Public License as published by
-#     the Free Software Foundation, either version 3 of the License, or
-#     (at your option) any later version.
-#
-#     OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
-#     ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
-#     FITNESS FOR A PARTICULAR PURPOSE.  See the GNU General Public License
-#     for more details.
-#
-#     You should have received a copy of the GNU General Public License
-#     along with OpenFOAM.  If not, see <http://www.gnu.org/licenses/>.
-#
-# Script
-#     makeTecio
-#
-# Description
-#     Build Tecplot library
-#
-# ----------------------------------------------
-# NO USER-CONFIGURABLE SETTINGS WITHIN THIS FILE
-#------------------------------------------------------------------------------
-# Run from third-party directory only
-cd ${0%/*} && wmakeCheckPwd "$WM_THIRD_PARTY_DIR" 2>/dev/null || {
-    echo "Error (${0##*/}) : not located in \$WM_THIRD_PARTY_DIR"
-    echo "    Check your OpenFOAM environment and installation"
-    exit 1
-}
-[ -n "$FOAM_EXT_LIBBIN" ] || {
-    echo "Error (${0##*/}) : \$FOAM_EXT_LIBBIN not set"
-    echo "    Check your OpenFOAM environment and installation"
-    exit 1
-}
-. etc/tools/ThirdPartyFunctions
-#------------------------------------------------------------------------------
-
-# Boost version (headers only) from OpenFOAM etc/config.sh file:
-_foamEtc config.sh/CGAL
-
-boostPACKAGE=${boost_version:-boost-system}
-tecioPACKAGE=tecio
-targetType=lib
-
-#------------------------------------------------------------------------------
-usage()
-{
-    exec 1>&2
-    while [ "$#" -ge 1 ]; do echo "$1"; shift; done
-    /bin/cat<<USAGE
-
-Usage: ${0##*/} [OPTION] [boost-VERSION] [tecio-VERSION]
-options:
-  -cmake PATH       With cmake from the path given
-  -gcc              Force gcc/g++ instead of the values from \$WM_CC, \$WM_CXX
-  -help
-
-* Compile the proprietary libtecio library
-      $tecioPACKAGE
-  with $boostPACKAGE
-
-USAGE
-    exit 1
-}
-#------------------------------------------------------------------------------
-# Compiler settings for CMake/configure
-[ -n "$WM_CC" ]  && export CC="$WM_CC"
-[ -n "$WM_CXX" ] && export CXX="$WM_CXX"
-
-# Parse options
-while [ "$#" -gt 0 ]
-do
-    case "$1" in
-    '') ;;      # Ignore empty
-    -h | -help) usage   ;;
-    -gcc)       useGcc  ;;
-
-    -cmake)
-        [ "$#" -ge 2 ] || die "'$1' option requires an argument"
-        CMAKE_PATH="${2%%/}"
-        shift
-        ;;
-    boost-[0-9]* | boost_[0-9]* | boost-system )
-        boostPACKAGE="${1%%/}"
-        ;;
-    tecio*)
-        tecioPACKAGE="${1%%/}"
-        ;;
-    *)
-        die "unknown option/argument: '$1'"
-        ;;
-    esac
-    shift
-done
-
-#------------------------------------------------------------------------------
-# Build TECIO library
-#
-#   TECIO_SOURCE_DIR : location of the original sources
-#   TECIO_BUILD_DIR  : location of the build
-#   TECIO_ARCH_PATH  : location of the installed program
-
-TECIO_SOURCE_DIR=$sourceBASE/$tecioPACKAGE/teciosrc
-TECIO_BUILD_DIR=$buildBASE/$tecioPACKAGE
-TECIO_ARCH_PATH=$installBASE/$tecioPACKAGE
-
-# Sources must be available
-[ -d "$TECIO_SOURCE_DIR" ] || die "Missing sources '$tecioPACKAGE'"
-
-
-# Get Boost information
-# - only headers are required
-: ${BOOST_ARCH_PATH:=$installBASE/$boostPACKAGE}    # Fallback
-
-boostInc="$BOOST_ARCH_PATH/include"
-
-if _foamIsSystem $boostPACKAGE
-then
-    echo "Using boost-system"
-
-    # Tagged as 'system' but could actually point to a central location
-    [ -d "$BOOST_ARCH_PATH/include" ] || {
-        boostInc="/usr/include"
-    }
-elif [ -f "$boostInc/boost/version.hpp" ]
-then
-    echo "Using $boostPACKAGE"
-fi
-
-
-if [ -d "$TECIO_SOURCE_DIR" ]
-then
-(
-    # Remove any existing build folder and recreate
-    if [ -d $TECIO_BUILD_DIR ]
-    then
-        echo "removing old build directory"
-        echo "    $TECIO_BUILD_DIR"
-        rm -rf $TECIO_BUILD_DIR
-    fi
-    mkdir -p $TECIO_BUILD_DIR
-
-    rm -rf $TECIO_ARCH_PATH
-
-    unset configBoost
-    echo "----"
-    echo "Configuring $tecioPACKAGE with boost $BOOST_VERSION"
-    echo "    Source         : $TECIO_SOURCE_DIR"
-    echo "    Build          : $TECIO_BUILD_DIR"
-    echo "    Target         : $TECIO_ARCH_PATH"
-
-    if [ -d "$BOOST_ARCH_PATH" ]
-    then
-        echo "    Boost          : ThirdParty (${BOOST_ARCH_PATH##*/})"
-    else
-        echo "    Boost          : system"
-    fi
-
-    cmake=$(findCMake)
-
-    echo "----"
-    set -x
-    cd $TECIO_BUILD_DIR && $cmake \
-        -DCMAKE_INSTALL_PREFIX=$TECIO_ARCH_PATH \
-        -DCMAKE_BUILD_TYPE=Release \
-        -DBoost_INCLUDE_DIR=$boostInc \
-        $TECIO_SOURCE_DIR \
-    && make -j $WM_NCOMPPROCS \
-    && { \
-        # Tecio doesn't offer to install, but fortunately only a few files,
-        # so just install in a single directory
-        mkdir -p $TECIO_ARCH_PATH 2>/dev/null
-
-        /bin/cp -pv \
-            $TECIO_BUILD_DIR/libtecio.a \
-            $TECIO_SOURCE_DIR/TECIO.h \
-            $TECIO_SOURCE_DIR/tecio_Exports.h \
-            $TECIO_ARCH_PATH
-
-        chmod 0644 $TECIO_ARCH_PATH/*
-    } \
-    && echo "Built: $tecioPACKAGE"
-) || {
-    echo "Error building: $tecioPACKAGE"
-}
-fi
-
-#------------------------------------------------------------------------------

makeVTK

@@ -3,24 +3,12 @@
 # =========                 |
 # \\      /  F ield         | OpenFOAM: The Open Source CFD Toolbox
 #  \\    /   O peration     |
-#   \\  /    A nd           | Copyright (C) 2016-2017 OpenCFD Ltd.
+#   \\  /    A nd           | Copyright (C) 2016-2018 OpenCFD Ltd.
 #    \\/     M anipulation  |
 #------------------------------------------------------------------------------
 # License
-#     This file is part of OpenFOAM.
-#
-#     OpenFOAM is free software: you can redistribute it and/or modify it
-#     under the terms of the GNU General Public License as published by
-#     the Free Software Foundation, either version 3 of the License, or
-#     (at your option) any later version.
-#
-#     OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
-#     ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
-#     FITNESS FOR A PARTICULAR PURPOSE.  See the GNU General Public License
-#     for more details.
-#
-#     You should have received a copy of the GNU General Public License
-#     along with OpenFOAM.  If not, see <http://www.gnu.org/licenses/>.
+#     This file is part of OpenFOAM, licensed under GNU General Public License
+#     <http://www.gnu.org/licenses/>.
 #
 # Script
 #     makeVTK
@@ -52,9 +40,17 @@ cd ${0%/*} && wmakeCheckPwd "$WM_THIRD_PARTY_DIR" 2>/dev/null || {
 unset vtk_version mesa_version                           # Purge current values
 
 # vtk version from OpenFOAM etc/config.sh file:
-_foamEtc config.sh/vtk
+_foamConfig vtk
+
+VTK_VERSION="$vtk_version"
+
+case "$VTK_VERSION" in
+[Vv]*)
+    VTK_VERSION="${VTK_VERSION##*-}"        # Without "VTK-" prefix
+    ;;
+esac
+VTK_VERSION="${VTK_VERSION%%-*}"            # Without suffix (eg, -mesa)
 
-VTK_VERSION=$vtk_version
 
 # New rendering backend (starting with vtk 7?).
 withGL2=auto # auto-config based on version
@@ -107,9 +103,7 @@ USAGE
     exit 1
 }
 #------------------------------------------------------------------------------
-# Compiler settings for CMake/configure
-[ -n "$WM_CC" ]  && export CC="$WM_CC"
-[ -n "$WM_CXX" ] && export CXX="$WM_CXX"
+exportCompiler          # Compiler info for CMake/configure
 
 # Various building stages
 unset runPATCH runCONFIG runMAKE runINSTALL

makeVTK.example

@@ -2,15 +2,29 @@
 # An example for building particular combinations of VTK with
 # - mesa (off-screen only)
 
-vtk=VTK-8.1.0
+vtk=VTK-9.0.0
 # mesa=mesa-11.2.2
 # mesa=mesa-13.0.3
 mesa=mesa-17.1.1
 
+# Request building MPI modules
+# VTK_Group_MPI=ON
+#
+# Request building vtkAcceleratorsVTKm
+# Module_vtkAcceleratorsVTKm=OFF
+#
+# Request building vtkParallelMPI
+# Module_vtkParallelMPI=ON
+
+set -x
 ./makeVTK \
-    $vtk \
+    -mpi=0 \
     -osmesa \
     -mesa-prefix $WM_THIRD_PARTY_DIR/platforms/$WM_ARCH$WM_COMPILER/$mesa \
-    "$@"
+    $vtk "$@" \
+    VTK_Group_MPI=ON \
+    Module_vtkAcceleratorsVTKm=ON \
+    Module_vtkParallelMPI=ON
+
 
 #------------------------------------------------------------------------------

minCmake

@@ -7,20 +7,8 @@
 #    \\/     M anipulation  |
 #------------------------------------------------------------------------------
 # License
-#     This file is part of OpenFOAM.
-#
-#     OpenFOAM is free software: you can redistribute it and/or modify it
-#     under the terms of the GNU General Public License as published by
-#     the Free Software Foundation, either version 3 of the License, or
-#     (at your option) any later version.
-#
-#     OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
-#     ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
-#     FITNESS FOR A PARTICULAR PURPOSE.  See the GNU General Public License
-#     for more details.
-#
-#     You should have received a copy of the GNU General Public License
-#     along with OpenFOAM.  If not, see <http://www.gnu.org/licenses/>.
+#     This file is part of OpenFOAM, licensed under GNU General Public License
+#     <http://www.gnu.org/licenses/>.
 #
 # Script
 #     minCmake

sources.txt

@@ -1,48 +0,0 @@
-Third-Party Sources
-===================
-
-OpenFOAM-1706
----------------
-CGAL-4.9.1
-ParaView-5.4.0
-boost_1_64_0
-fftw-3.3.6-pl1
-openmpi-1.10.4
-scotch_6.0.3
-
-
-OpenFOAM-1612
----------------
-CGAL-4.9
-ParaView-5.0.1
-boost_1_62_0
-fftw-3.3.5
-openmpi-1.10.4
-scotch_6.0.3
-
-
-OpenFOAM-1606
----------------
-CGAL-4.8
-ParaView-5.0.1
-boost_1_61_0
-fftw-3.3.4
-openmpi-1.10.2
-scotch_6.0.3
-
-
-OpenFOAM v3.0+
----------------
-CGAL-4.7
-ParaView-4.4.0
-openmpi-1.10.0
-scotch_6.0.3
-
-
-OpenFOAM+ 2.4
----------------
-CGAL-4.6
-ParaView-4.1.0
-cmake-2.8.12.1
-openmpi-1.8.5
-scotch_6.0.3