Merge branch 'master' of ssh://noisy/home/noisy3/OpenFOAM/OpenFOAM-dev

This commit is contained in:
andy
2009-04-03 13:19:24 +01:00
65 changed files with 200 additions and 76 deletions

View File

@ -59,7 +59,8 @@
rho = thermo->rho();
rho.relax();
Info<< "rho max/min : " << max(rho).value() << " " << min(rho).value() << endl;
Info<< "rho max/min : " << max(rho).value() << " " << min(rho).value()
<< endl;
pd == p - (rho*gh + pRef);
}

View File

@ -1,6 +1,6 @@
EXE_INC = \
/* -g -DFULLDEBUG -O0 */ \
-I$(LIB_SRC)/decompositionAgglomeration/decompositionMethods/lnInclude \
-I$(LIB_SRC)/decompositionMethods/decompositionMethods/lnInclude \
-I$(LIB_SRC)/autoMesh/lnInclude \
-I$(LIB_SRC)/meshTools/lnInclude \
-I$(LIB_SRC)/triSurface/lnInclude \
@ -9,7 +9,6 @@ EXE_INC = \
-I$(LIB_SRC)/finiteVolume/lnInclude
EXE_LIBS = \
-L$(FOAM_MPI_LIBBIN) -lparMetisDecompositionMethod \
-lfiniteVolume \
-ldecompositionMethods \
-lmeshTools \

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@ -2,7 +2,7 @@ EXE_INC = \
-I$(LIB_SRC)/meshTools/lnInclude \
-I$(LIB_SRC)/dynamicMesh/lnInclude \
-I$(LIB_SRC)/finiteVolume/lnInclude \
-I$(LIB_SRC)/decompositionAgglomeration/decompositionMethods/lnInclude
-I$(LIB_SRC)/decompositionMethods/decompositionMethods/lnInclude
EXE_LIBS = \
-lmeshTools \

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@ -1,5 +1,5 @@
EXE_INC = \
-I$(LIB_SRC)/decompositionAgglomeration/decompositionMethods/lnInclude \
-I$(LIB_SRC)/decompositionMethods/decompositionMethods/lnInclude \
-I$(LIB_SRC)/finiteVolume/lnInclude \
-I$(LIB_SRC)/lagrangian/basic/lnInclude \
-I$(LIB_SRC)/meshTools/lnInclude

View File

@ -1,5 +1,5 @@
EXE_INC = \
-I$(LIB_SRC)/decompositionAgglomeration/decompositionMethods/lnInclude \
-I$(LIB_SRC)/decompositionMethods/decompositionMethods/lnInclude \
-I$(LIB_SRC)/finiteVolume/lnInclude \
-I$(LIB_SRC)/meshTools/lnInclude \
-I$(LIB_SRC)/dynamicMesh/lnInclude

View File

@ -223,6 +223,7 @@ void mapLagrangian(const meshToMesh& meshToMeshInterp)
{
unmappedSource.erase(sourceParticleI);
addParticles.append(sourceParticleI);
iter().cell()=targetCell;
targetParcels.addParticle
(
sourceParcels.remove(&iter())

View File

@ -27,12 +27,12 @@
# foamCleanPath
#
# Description
# Usage: foamCleanPath path [wildcard] .. [wildcard]
# Usage: foamCleanPath [-strip] path [wildcard] .. [wildcard]
#
# Prints its argument (which should be a ':' separated path)
# without all
# - duplicate elements
# - non-accessible directories
# - (if '-strip') non-accessible directories
# - elements whose start matches a wildcard
#
# Note:
@ -42,16 +42,25 @@
if [ "$#" -lt 1 -o "$1" = "-h" -o "$1" = "-help" ]
then
cat <<USAGE 1>&2
Usage: ${0##*/} path [wildcard] .. [wildcard]
Usage: ${0##*/} [-strip] path [wildcard] .. [wildcard]
Prints its argument (which should be a ':' separated list) cleansed from
- duplicate elements
- non-accessible directories
- elements whose start matches one of the wildcard(s)
- (if '-strip') non-accessible directories
USAGE
exit 1
fi
strip=''
if [ "$1" = "-strip" ]
then
strip=true
shift
fi
dirList="$1"
shift
@ -94,6 +103,10 @@ do
then
dirList="$dirList $dir"
fi
elif [ "$strip" != "true" ]
then
# Print non-existing directories if not in 'strip' mode.
dirList="$dirList $dir"
fi
done

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@ -77,6 +77,12 @@ export WM_PROJECT_USER_DIR=$HOME/$WM_PROJECT/$USER-$WM_PROJECT_VERSION
export WM_THIRD_PARTY_DIR=$WM_PROJECT_INST_DIR/ThirdParty
# Operating System/Platform
# ~~~~~~~~~~~~~~~~~~~~~~~~~
# WM_OS = Unix | ????
: ${WM_OS:=Unix}; export WM_OS
# Compiler: set to Gcc, Gcc43 or Icc (for Intel's icc)
# ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
: ${WM_COMPILER:=Gcc}; export WM_COMPILER
@ -146,10 +152,12 @@ Linux)
;;
esac
;;
ia64)
WM_ARCH=linuxIA64
export WM_COMPILER=I64
;;
mips64)
WM_ARCH=SiCortex64
export WM_COMPILER_LIB_ARCH=64
@ -160,6 +168,17 @@ Linux)
export WM_LDFLAGS='-mabi=64 -G0'
export WM_MPLIB=MPI
;;
ppc64)
WM_ARCH=linuxPPC64
export WM_COMPILER_LIB_ARCH=64
export WM_CC='gcc'
export WM_CXX='g++'
export WM_CFLAGS='-m64 -fPIC'
export WM_CXXFLAGS='-m64 -fPIC'
export WM_LDFLAGS='-m64'
;;
*)
echo Unknown processor type `uname -m` for Linux
;;

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@ -71,6 +71,12 @@ setenv WM_PROJECT_USER_DIR $HOME/$WM_PROJECT/$LOGNAME-$WM_PROJECT_VERSION
setenv WM_THIRD_PARTY_DIR $WM_PROJECT_INST_DIR/ThirdParty
# Operating System/Platform
# ~~~~~~~~~~~~~~~~~~~~~~~~~
# WM_OS = Unix | ????
if ( ! $?WM_OS ) setenv WM_OS Unix
# Compiler: set to Gcc, Gcc43 or Icc (for Intel's icc)
# ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
if ( ! $?WM_COMPILER ) setenv WM_COMPILER Gcc
@ -114,6 +120,7 @@ case Linux:
switch (`uname -m`)
case i686:
breaksw
case x86_64:
switch ($WM_ARCH_OPTION)
case 32:
@ -125,6 +132,7 @@ case Linux:
setenv WM_CXXFLAGS '-m32 -fPIC'
setenv WM_LDFLAGS '-m32'
breaksw
case 64:
setenv WM_ARCH linux64
setenv WM_COMPILER_LIB_ARCH 64
@ -134,15 +142,19 @@ case Linux:
setenv WM_CXXFLAGS '-m64 -fPIC'
setenv WM_LDFLAGS '-m64'
breaksw
default:
echo Unknown WM_ARCH_OPTION $WM_ARCH_OPTION, should be 32 or 64
breaksw
endsw
breaksw
case ia64:
setenv WM_ARCH linuxIA64
setenv WM_COMPILER I64
breaksw
case mips64:
setenv WM_ARCH SiCortex64
setenv WM_COMPILER_LIB_ARCH 64
@ -153,9 +165,21 @@ case Linux:
setenv WM_LDFLAGS '-mabi=64 -G0'
setenv WM_MPLIB MPI
breaksw
case ppc64:
setenv WM_ARCH linuxPPC64
setenv WM_COMPILER_LIB_ARCH 64
setenv WM_CC 'gcc'
setenv WM_CXX 'g++'
setenv WM_CFLAGS '-m64 -fPIC'
setenv WM_CXXFLAGS '-m64 -fPIC'
setenv WM_LDFLAGS '-m64'
breaksw
default:
echo Unknown processor type `uname -m` for Linux
breaksw
endsw
breaksw

View File

@ -35,8 +35,6 @@
alias _foamAddPath 'set path=(\!* $path)'
# prefix to LD_LIBRARY_PATH
alias _foamAddLib 'setenv LD_LIBRARY_PATH \!*\:${LD_LIBRARY_PATH}'
# make directory if it doesn't already exist
alias _foamMkDir 'if ( ! -d \!* ) mkdir -p \!*'
# location of the jobControl directory
setenv FOAM_JOB_DIR $WM_PROJECT_INST_DIR/jobControl
@ -71,12 +69,6 @@ _foamAddPath $FOAM_USER_APPBIN
_foamAddLib $FOAM_LIBBIN
_foamAddLib $FOAM_USER_LIBBIN
# create these directories if necessary:
_foamMkDir $FOAM_LIBBIN
_foamMkDir $FOAM_APPBIN
_foamMkDir $FOAM_USER_LIBBIN
_foamMkDir $FOAM_USER_APPBIN
# Select compiler installation
# ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
@ -130,9 +122,6 @@ case OPENMPI:
_foamAddPath $MPI_ARCH_PATH/bin
_foamAddLib $MPI_ARCH_PATH/lib
# before compiling, these directories may not exist:
_foamMkDir $MPI_ARCH_PATH/bin
_foamMkDir $MPI_ARCH_PATH/lib
setenv FOAM_MPI_LIBBIN $FOAM_LIBBIN/$mpi_version
unset mpi_version
@ -147,9 +136,6 @@ case LAM:
_foamAddPath $MPI_ARCH_PATH/bin
_foamAddLib $MPI_ARCH_PATH/lib
# before compiling, these directories may not exist:
_foamMkDir $MPI_ARCH_PATH/bin
_foamMkDir $MPI_ARCH_PATH/lib
setenv FOAM_MPI_LIBBIN $FOAM_LIBBIN/$mpi_version
unset mpi_version
@ -163,9 +149,6 @@ case MPICH:
_foamAddPath $MPI_ARCH_PATH/bin
_foamAddLib $MPI_ARCH_PATH/lib
# before compiling, these directories may not exist:
_foamMkDir $MPI_ARCH_PATH/bin
_foamMkDir $MPI_ARCH_PATH/lib
setenv FOAM_MPI_LIBBIN $FOAM_LIBBIN/$mpi_version
unset mpi_version
@ -180,9 +163,6 @@ case MPICH-GM:
_foamAddPath $MPI_ARCH_PATH/bin
_foamAddLib $MPI_ARCH_PATH/lib
_foamAddLib $GM_LIB_PATH
# before compiling, these directories may not exist:
_foamMkDir $MPI_ARCH_PATH/bin
_foamMkDir $MPI_ARCH_PATH/lib
setenv FOAM_MPI_LIBBIN $FOAM_LIBBIN/mpich-gm
breaksw
@ -246,8 +226,6 @@ default:
endsw
_foamAddLib $FOAM_MPI_LIBBIN
# before compiling, this directory may not exist:
_foamMkDir $FOAM_MPI_LIBBIN
# Set the minimum MPI buffer size (used by all platforms except SGI MPI)
@ -281,7 +259,6 @@ endif
# ~~~~~~~~~~~~~~~~~~~~
unalias _foamAddPath
unalias _foamAddLib
unalias _foamMkDir
unset minBufferSize
# -----------------------------------------------------------------------------

View File

@ -52,17 +52,6 @@ _foamAddLib()
}
# make directories if they don't already exist
_foamMkDir()
{
while [ $# -ge 1 ]
do
[ -d $1 ] || mkdir -p $1
shift
done
}
# location of the jobControl directory
export FOAM_JOB_DIR=$WM_PROJECT_INST_DIR/jobControl
@ -94,9 +83,6 @@ export PATH=$WM_DIR:$WM_PROJECT_DIR/bin:$PATH
_foamAddPath $FOAM_APPBIN $FOAM_USER_APPBIN
_foamAddLib $FOAM_LIBBIN $FOAM_USER_LIBBIN
# create these directories if necessary:
_foamMkDir $FOAM_LIBBIN $FOAM_USER_LIBBIN $FOAM_APPBIN $FOAM_USER_APPBIN
# Compiler settings
# ~~~~~~~~~~~~~~~~~
@ -160,8 +146,6 @@ OPENMPI)
_foamAddPath $MPI_ARCH_PATH/bin
_foamAddLib $MPI_ARCH_PATH/lib
# before compiling, these directories may not exist:
_foamMkDir $MPI_ARCH_PATH/bin $MPI_ARCH_PATH/lib
export FOAM_MPI_LIBBIN=$FOAM_LIBBIN/$mpi_version
unset mpi_version
@ -176,8 +160,6 @@ LAM)
_foamAddPath $MPI_ARCH_PATH/bin
_foamAddLib $MPI_ARCH_PATH/lib
# before compiling, these directories may not exist:
_foamMkDir $MPI_ARCH_PATH/bin $MPI_ARCH_PATH/lib
export FOAM_MPI_LIBBIN=$FOAM_LIBBIN/$mpi_version
unset mpi_version
@ -191,8 +173,6 @@ MPICH)
_foamAddPath $MPI_ARCH_PATH/bin
_foamAddLib $MPI_ARCH_PATH/lib
# before compiling, these directories may not exist:
_foamMkDir $MPI_ARCH_PATH/bin $MPI_ARCH_PATH/lib
export FOAM_MPI_LIBBIN=$FOAM_LIBBIN/$mpi_version
unset mpi_version
@ -207,8 +187,6 @@ MPICH-GM)
_foamAddPath $MPI_ARCH_PATH/bin
_foamAddLib $MPI_ARCH_PATH/lib
_foamAddLib $GM_LIB_PATH
# before compiling, these directories may not exist:
_foamMkDir $MPI_ARCH_PATH/bin $MPI_ARCH_PATH/lib
export FOAM_MPI_LIBBIN=$FOAM_LIBBIN/mpich-gm
;;
@ -274,8 +252,6 @@ QSMPI)
esac
_foamAddLib $FOAM_MPI_LIBBIN
# before compiling, this directory may not exist:
_foamMkDir $FOAM_MPI_LIBBIN
# Set the minimum MPI buffer size (used by all platforms except SGI MPI)
@ -304,6 +280,6 @@ export MPI_BUFFER_SIZE
# cleanup environment:
# ~~~~~~~~~~~~~~~~~~~~
unset _foamAddPath _foamAddLib _foamMkDir minBufferSize
unset _foamAddPath _foamAddLib minBufferSize
# -----------------------------------------------------------------------------

View File

@ -18,7 +18,8 @@ wmake libso triSurface
wmake libso edgeMesh
wmake libso surfMesh
decompositionAgglomeration/Allwmake
# Decomposition methods needed by meshTools
decompositionMethods/Allwmake
wmake libso meshTools
wmake libso finiteVolume
@ -44,4 +45,6 @@ conversion/Allwmake
wmake libso autoMesh
wmake libso errorEstimation
fvAgglomerationMethods/Allwmake
# ----------------------------------------------------------------- end-of-file

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@ -1,5 +1,5 @@
EXE_INC = \
-I$(LIB_SRC)/decompositionAgglomeration/decompositionMethods/lnInclude \
-I$(LIB_SRC)/decompositionMethods/decompositionMethods/lnInclude \
-I$(LIB_SRC)/dynamicMesh/lnInclude \
-I$(LIB_SRC)/finiteVolume/lnInclude \
-I$(LIB_SRC)/lagrangian/basic/lnInclude \

View File

@ -1212,6 +1212,17 @@ void Foam::meshRefinement::findCellZoneTopo
// by changing cell zone every time we cross a surface.
while (true)
{
// Synchronise regionToCellZone.
// Note:
// - region numbers are identical on all processors
// - keepRegion is identical ,,
// - cellZones are identical ,,
// This done at top of loop to account for geometric matching
// not being synchronised.
Pstream::listCombineGather(regionToCellZone, maxEqOp<label>());
Pstream::listCombineScatter(regionToCellZone);
bool changed = false;
// Internal faces
@ -1292,14 +1303,6 @@ void Foam::meshRefinement::findCellZoneTopo
{
break;
}
// Synchronise regionToCellZone.
// Note:
// - region numbers are identical on all processors
// - keepRegion is identical ,,
// - cellZones are identical ,,
Pstream::listCombineGather(regionToCellZone, maxEqOp<label>());
Pstream::listCombineScatter(regionToCellZone);
}

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@ -9,6 +9,4 @@ then
(WM_OPTIONS=${WM_OPTIONS}$WM_MPLIB; wmake libso parMetisDecomp)
fi
wmake libso MGridGenGamgAgglomeration
# ----------------------------------------------------------------- end-of-file

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@ -0,0 +1,7 @@
#!/bin/sh
cd ${0%/*} || exit 1 # run from this directory
set -x
wmake libso MGridGenGamgAgglomeration
# ----------------------------------------------------------------- end-of-file

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@ -329,6 +329,9 @@ public:
//- Return current particle position
inline vector& position();
//- Return current cell particle is in
inline label& cell();
//- Return current cell particle is in
inline label cell() const;

View File

@ -303,6 +303,12 @@ inline label Particle<ParticleType>::cell() const
return celli_;
}
template<class ParticleType>
inline label& Particle<ParticleType>::cell()
{
return celli_;
}
template<class ParticleType>
inline label Particle<ParticleType>::face() const

View File

@ -1,6 +1,6 @@
EXE_INC = \
-I$(LIB_SRC)/triSurface/lnInclude \
-I$(LIB_SRC)/decompositionAgglomeration/decompositionMethods/lnInclude \
-I$(LIB_SRC)/decompositionMethods/decompositionMethods/lnInclude \
-I$(LIB_SRC)/lagrangian/basic/lnInclude
LIB_LIBS = \

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@ -13,7 +13,7 @@ reactingMixture = $(mixtures)/reactingMixture
$(chemistryReader)/chemistryReader.C
$(foamChemistryReader)/foamChemistryReader.C
$(chemkinReader)/chemkinReader.C
$(chemkinReader)/chemkinLexer.C
$(chemkinReader)/chemkinLexer.L
$(combustionMixture)/combustionMixture.C
$(reactingMixture)/reactingMixture.C

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@ -30,6 +30,9 @@ Description
\*---------------------------------------------------------------------------*/
#ifndef radiationConstants_H
#define radiationConstants_H
#include "dimensionedScalar.H"
// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
@ -43,5 +46,8 @@ namespace radiation
}
}
// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
#endif
// ************************************************************************* //

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@ -265,10 +265,10 @@ bool Foam::radiation::fvDOM::read()
{
if (radiationModel::read())
{
// nothing to read
// Only reading solution parameters - not changing ray geometry
// coeffs_.lookup("nTheta") >> nTheta_;
// coeffs_.lookup("nPhi") >> nPhi_;
coeffs_.readIfPresent("convergence", convergence_);
coeffs_.readIfPresent("maxIter", maxIter_);
return true;
}

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@ -128,7 +128,7 @@ void Foam::radiation::radiationModel::correct()
return;
}
if ((time_.timeIndex() == 0) || (time_.timeIndex() % solverFreq_ == 0))
if (time_.timeIndex() % solverFreq_ == 0)
{
calculate();
}

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@ -0,0 +1,3 @@
XFLAGS =
XINC = $(XFLAGS) -I/usr/X11R6/include
XLIBS = -L/usr/X11R6/lib64 -lXext -lX11

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@ -0,0 +1,16 @@
.SUFFIXES: .c .h
cWARN = -Wall
cc = gcc -m64 -mcpu=power5+
include $(RULES)/c$(WM_COMPILE_OPTION)
cFLAGS = $(GFLAGS) $(cWARN) $(cOPT) $(cDBUG) $(LIB_HEADER_DIRS) -fPIC
ctoo = $(WM_SCHEDULER) $(cc) $(cFLAGS) -c $$SOURCE -o $@
LINK_LIBS = $(cDBUG)
LINKLIBSO = $(cc) -shared
LINKEXE = $(cc) -Xlinker -z -Xlinker nodefs

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@ -0,0 +1,21 @@
.SUFFIXES: .C .cxx .cc .cpp
c++WARN = -Wall -Wno-strict-aliasing -Wextra -Wno-unused-parameter -Wold-style-cast
CC = g++ -m64 -mcpu=power5+
include $(RULES)/c++$(WM_COMPILE_OPTION)
ptFLAGS = -DNoRepository -ftemplate-depth-40
c++FLAGS = $(GFLAGS) $(c++WARN) $(c++OPT) $(c++DBUG) $(ptFLAGS) $(LIB_HEADER_DIRS) -fPIC
Ctoo = $(WM_SCHEDULER) $(CC) $(c++FLAGS) -c $$SOURCE -o $@
cxxtoo = $(Ctoo)
cctoo = $(Ctoo)
cpptoo = $(Ctoo)
LINK_LIBS = $(c++DBUG)
LINKLIBSO = $(CC) $(c++FLAGS) -shared
LINKEXE = $(CC) $(c++FLAGS)

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@ -0,0 +1,2 @@
c++DBUG = -ggdb3 -DFULLDEBUG
c++OPT = -O0 -fdefault-inline

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@ -0,0 +1,2 @@
c++DBUG =
c++OPT = -O3

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@ -0,0 +1,2 @@
c++DBUG = -pg
c++OPT = -O2

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@ -0,0 +1,2 @@
cDBUG = -ggdb -DFULLDEBUG
cOPT = -O1 -fdefault-inline -finline-functions

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@ -0,0 +1,2 @@
cDBUG =
cOPT = -O3 -fno-gcse

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@ -0,0 +1,2 @@
cDBUG = -pg
cOPT = -O2

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@ -0,0 +1,11 @@
CPP = /lib/cpp $(GFLAGS)
LD = ld -m elf64ppc
PROJECT_LIBS = -l$(WM_PROJECT) -liberty -ldl
include $(GENERAL_RULES)/standard
include $(RULES)/X
include $(RULES)/c
include $(RULES)/c++
include $(GENERAL_RULES)/cint

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@ -0,0 +1,3 @@
PFLAGS =
PINC =
PLIBS =

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@ -0,0 +1,3 @@
PFLAGS =
PINC = -I$(MPI_ARCH_PATH)/include
PLIBS = -L$(MPI_ARCH_PATH)/lib -lgamma

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@ -0,0 +1,3 @@
PFLAGS =
PINC = -I$(MPI_ARCH_PATH)/include -D_MPICC_H
PLIBS = -L$(MPI_ARCH_PATH)/lib/linux_amd64 -lmpi

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@ -0,0 +1,3 @@
PFLAGS =
PINC = -I$(MPI_ARCH_PATH)/include
PLIBS = -L$(MPI_ARCH_PATH)/lib -lmpi -llam -lpthread -lutil

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@ -0,0 +1,3 @@
PFLAGS =
PINC = -I$(MPI_ARCH_PATH)/include
PLIBS = -L$(MPI_ARCH_PATH)/lib -lmpich -lrt

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@ -0,0 +1,3 @@
PFLAGS =
PINC = -I$(MPI_ARCH_PATH)/include
PLIBS = -L$(MPI_ARCH_PATH)/lib -lmpich -L$(GM_LIB_PATH) -lgm

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@ -0,0 +1,3 @@
PFLAGS = -DOMPI_SKIP_MPICXX
PINC = -I$(MPI_ARCH_PATH)/include
PLIBS = -L$(MPI_ARCH_PATH)/lib -lmpi

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@ -0,0 +1,4 @@
PFLAGS =
PINC = -I$(MPI_ARCH_PATH)/include
PLIBS = -L$(MPI_ARCH_PATH)/lib -lmpi