Commit Graph

973 Commits

Author SHA1 Message Date
b6b2f430a3 CONFIG: bump paraview to 5.5.2 2018-06-20 01:57:35 +02:00
f5275444cc CONFIG: adjust adios2 config 2018-06-19 13:53:23 +02:00
dad09c5e7d BUG: Correction to commit 8540e6f
- corrected the mass based correction and updated the misleading function
  arguments

- moved the option to the optimisation switches, e.g.:

    OptimisationSwitches
    {
        experimentalDdtCorr 1;
    }

- default remains off/no (0)
2018-06-18 14:13:12 +01:00
01f76d7d55 CONFIG: list Clang37 as well for ThirdParty clang
- for Darwin, mention that clang is the only compiler configured

- adjust comments
2018-06-15 09:06:06 +02:00
e20eaf6af9 CONFIG: update completion cache for csh use 2018-06-14 11:14:51 +02:00
c909a5df25 GIT: resolved merge conflict 2018-06-13 14:20:18 +01:00
8b614d4a46 CONFIG: incorrect Qt5 detect (csh variant)
- bump to ParaView 5.5.1
2018-06-11 11:48:09 +02:00
c611bd6f94 CONFIG: add hostCollated for -fileHandler completion
- in anticipation of future change,
  hard-coded choice within bash_completion
2018-06-07 15:43:46 +02:00
dc521b95df STYLE: consistent use of '= delete' 2018-05-30 12:03:17 +02:00
d8ea41e7bd STYLE: foamPwd (posix) function with some env replacements (issue #844)
- the current working path with replacements for base-level
  OpenFOAM env variables such as FOAM_RUN, WM_PROJECT_DIR,
  WM_PROJECT_USER_DIR etc

  Can be used directly from the command-line or embedded into a
  command prompt. For example,

      PS1='$(foamPwd)\n\u\$ '

- aliases for user solver/utilities located under "$WM_PROJECT_USER_DIR":
  (ufoam, uapp, usol, uutil)
2018-05-17 15:33:59 +01:00
ec5d9cdf01 Merge remote-tracking branch 'origin/develop' into develop-pre-release 2018-05-29 12:13:58 +01:00
f7fa618e8f Merge remote-tracking branch 'origin/develop' into develop-pre-release 2018-05-21 09:53:10 +01:00
447ee9e027 ENH: processorField: added etc/caseDicts file. Fixes #807. 2018-05-21 09:45:55 +01:00
977a9894b4 ENH: codedMotionSolver: motion solver with user-supplied coding 2018-05-21 08:59:01 +01:00
f700bce878 Merge remote-tracking branch 'origin/develop' into develop-pre-release 2018-05-17 12:14:27 +01:00
d8356fee44 CONFIG: change default writeLagrangianPositions ON (closes #781)
- this enables x,y,z access of lagrangian positions, which is useful
  for postprocessing in paraview, but at the expense of slightly
  more disk space.
2018-05-15 11:11:59 +01:00
65129d7b90 CONFIG: export ThirdParty Qt5_DIR (issue #827) 2018-05-14 17:04:18 +01:00
28627250c6 CONFIG: update catalyst configuration files
- relocated from
    etc/caseDicts/postProcessing/catalyst/ -> etc/caseDicts/insitu/catalyst/

- adjusted for unified catalyst function object
2018-05-11 14:55:47 +02:00
272e09b051 CONFIG: add Gcc81 2018-05-07 17:21:30 +02:00
f86c129fd5 STYLE: additional comment when completion not found (issue #719)
No completion added for XXX
    ... incorrect platform, or not yet compiled?
2018-04-30 07:50:48 +02:00
dd8341f659 ENH: make format of ExecutionTime = ... output configurable (issue #788)
- controlled by the the 'printExecutionFormat' InfoSwitch in
  etc/controlDict

      // Style for "ExecutionTime = " output
      // - 0 = seconds (with trailing 's')
      // - 1 = day-hh:mm:ss

   ExecutionTime = 112135.2 s  ClockTime = 113017 s

   ExecutionTime = 1-07:08:55.20  ClockTime = 1-07:23:37

- Callable via the new Time::printExecutionTime() method,
  which also helps to reduce clutter in the applications.
  Eg,

     runTime.printExecutionTime(Info);

  vs

     Info<< "ExecutionTime = " << runTime.elapsedCpuTime() << " s"
         << "  ClockTime = " << runTime.elapsedClockTime() << " s"
         << nl << endl;

--

ENH: return elapsedClockTime() and clockTimeIncrement as double

- previously returned as time_t, which is less portable.
2018-04-27 15:00:34 +02:00
e6787bfa9a Merge branch 'feature-bitset' into 'develop'
ENH: new bitSet class and improved PackedList class (closes #751)

See merge request Development/OpenFOAM-plus!200
2018-04-25 11:39:59 +01:00
76cb38fbc7 CONFIG: adjust make scripts for darwin
- handling of dead links (find -L -delete unsupported)

- remove ignore case flag on 's/../../i' used in have_scotch script.
  It is unneeded and not tolerated by Darwin's sed.

- avoid embedded comments in EXE_INC (Make/options files), which do
  not work well with the OSX LLVM cpp.
  It strips out the comments but also removes the continuation char.

STYLE: adjust notes about paraview library locations
2018-04-24 21:20:06 +02:00
2768500d57 CONFIG: remove WM_LINK_LANGUAGE env variable (always c++)
- was somewhat redundant in wmake/rules/General/general anyhow
2018-04-24 14:59:47 +02:00
b4d38ab468 ENH: improve handling of ThirdParty packages
- generalize some of the library extensions (.so vs .dylib).
  Provide as wmake 'sysFunctions'

- added note about unsupported/incomplete system support

- centralize detection of ThirdParty packages into wmake/ subdirectory
  by providing a series of scripts in the spirit of GNU autoconfig.
  For example,

      have_boost, have_readline, have_scotch, ...

  Each of the `have_<package>` scripts will generally provide the
  following type of functions:

      have_<package>          # detection
      no_<package>            # reset
      echo_<package>          # echoing

  and the following type of variables:

      HAVE_<package>          # unset or 'true'
      <package>_ARCH_PATH     # root for <package>
      <package>_INC_DIR       # include directory for <package>
      <package>_LIB_DIR       # library directory for <package>

  This simplifies the calling scripts:

      if have_metis
      then
          wmake metisDecomp
      fi

  As well as reducing clutter in the corresponding Make/options:

      EXE_INC = \
          -I$(METIS_INC_DIR) \
          -I../decompositionMethods/lnInclude

      LIB_LIBS = \
          -L$(METIS_LIB_DIR) -lmetis

  Any additional modifications (platform-specific or for an external build
  system) can now be made centrally.
2018-04-24 14:51:19 +02:00
0cfe88f2e4 CONFIG: update VTK version to use the latest version
- also see issue #793 (paraview version)
2018-04-19 10:08:09 +02:00
ef922b6917 STYLE: adjust codeTemplates to use '= delete' 2018-04-19 07:38:31 +02:00
ea71484efa ENH: add alternative STL ASCII parsers
- In addition to the traditional Flex-based parser, added a Ragel-based
  parser and a handwritten one.

  Some representative timings for reading 5874387 points (1958129 tris):

      Flex   Ragel   Manual
      5.2s   4.8s    6.7s         total reading time
      3.8s   3.4s    5.3s         without point merging
2018-04-16 10:20:45 +02:00
f056e59db6 CONFIG: simplify paraview lib path for 5.5 (issue #793)
- note that the python paths also seem to be treated differently
2018-04-12 12:39:30 +02:00
5f88e4271e ENH: allow "<case>", "<system>" ... in the string expansions (issue #792)
- the expansions were previously required as slash to follow, but
  now either are possible.

    "<case>", "<case>/" both yield the same as "$FOAM_CASE" and
    will not have a trailing slash in the result. The expansion of
    "$FOAM_CASE/" will however have a trailing slash.

- adjust additional files using these expansions
2018-04-11 23:10:49 +02:00
297570de53 COMP: some low-level darwin-related patches
- a partial selection from https://github.com/mrklein/openfoam-os-x
  with adjustments. The primary purpose is to reduce header-level
  incompatibilities and to provide a common set of make rules to allow
  easier patching (or re-integration).
2018-04-09 12:48:55 +02:00
1fff0109d1 STYLE: adjust config examples 2018-04-11 12:17:56 +02:00
d814bce3ee CONFIG: adjust paraview lib path for 5.5 (issue #793)
ParaView 5.4 and older:
    - requires lib/paraview-X.X only

  ParaView 5.5:
    - requires lib/
    - does not appear to require lib/paraview-X.X, but retained for simplicity

- Change default version to paraview-5.5.0 for testing purposes
2018-04-11 11:01:17 +02:00
6d8be52294 STYLE: provide caseDicts for the catalyst function object 2018-04-10 14:23:56 +02:00
2db4b0867e CONFIG: consolidate C++ flags per compiler type
- easier to ensure that flags are consistent
2018-03-21 11:50:57 +01:00
a0a039ad57 ENH: armclang: new compiler type. Fixes #779. 2018-03-21 12:08:44 +00:00
bac943e6fc ENH: new bitSet class and improved PackedList class (closes #751)
- The bitSet class replaces the old PackedBoolList class.
  The redesign provides better block-wise access and reduced method
  calls. This helps both in cases where the bitSet may be relatively
  sparse, and in cases where advantage of contiguous operations can be
  made. This makes it easier to work with a bitSet as top-level object.

  In addition to the previously available count() method to determine
  if a bitSet is being used, now have simpler queries:

    - all()  - true if all bits in the addressable range are empty
    - any()  - true if any bits are set at all.
    - none() - true if no bits are set.

  These are faster than count() and allow early termination.

  The new test() method tests the value of a single bit position and
  returns a bool without any ambiguity caused by the return type
  (like the get() method), nor the const/non-const access (like
  operator[] has). The name corresponds to what std::bitset uses.

  The new find_first(), find_last(), find_next() methods provide a faster
  means of searching for bits that are set.

  This can be especially useful when using a bitSet to control an
  conditional:

  OLD (with macro):

      forAll(selected, celli)
      {
          if (selected[celli])
          {
              sumVol += mesh_.cellVolumes()[celli];
          }
      }

  NEW (with const_iterator):

      for (const label celli : selected)
      {
          sumVol += mesh_.cellVolumes()[celli];
      }

      or manually

      for
      (
          label celli = selected.find_first();
          celli != -1;
          celli = selected.find_next()
      )
      {
          sumVol += mesh_.cellVolumes()[celli];
      }

- When marking up contiguous parts of a bitset, an interval can be
  represented more efficiently as a labelRange of start/size.
  For example,

  OLD:

      if (isA<processorPolyPatch>(pp))
      {
          forAll(pp, i)
          {
              ignoreFaces.set(i);
          }
      }

  NEW:

      if (isA<processorPolyPatch>(pp))
      {
          ignoreFaces.set(pp.range());
      }
2018-03-07 11:21:48 +01:00
664685f7fe CONFIG: bump API version number to 1803 to account for removal of Xfer
- primary points for an external user are the polyMesh constructor

- add config info for gcc-7.3.0

COMP: intel-2017. Ignore unknown pragmas. Disambiguate method resolution.
2018-03-05 20:18:26 +01:00
de4a1eeedb CONFIG: improve evaluation of arguments for foamEtcFile
- forward command-line arguments for paraview, where they may also be
  evaluated (cshrc, POSIX shell)
  Eg,
      . etc/bashrc ParaView_VERSION=5.4.1-mpipy
      source etc/cshrc ParaView_VERSION=5.4.1-mpipy
2018-01-24 12:15:09 +01:00
479b8e9d01 CONFIG: bump to llvm-5.0.1 version 2018-01-22 14:47:38 +01:00
ff07ae1520 CONFIG: typo in config.csh/mpi
- also handle stray semi-colons in foamCleanPath.
  Treat like a ':' separator.
  They are incorrect and potentially problematic for shell evals.
2018-01-16 12:00:21 +01:00
110b00f048 ENH: improved handling of gmp/mpfr library settings (issue #674)
- export library path for gmp/mpfr from CGAL config files.
  This is required when non-system gmp/mpfr libraries are being
  used, but not using a ThirdParty compiler installation.

- automatically handle lib/ vs lib64/ (eg, for central installations)
  for packages such as boost, CGAL, etc. While the ThirdParty
  compilation of these will normally land in lib64/, this may not be
  the case when they are supplied by another means.

- reworked the handling of foamEtcFile and foamCleanPath for less
  clutter in the configuration files.
  Added the bin/tools/lib-dir script to handle logic that is
  too complex to easily manage in csh.
2018-01-11 01:30:23 +01:00
243eda1f7a Merge remote-tracking branch 'origin/master' into develop 2018-01-08 15:05:31 +01:00
4fd32bfdf2 COMP: incorrect executable path sphereSurfactantFoam (closes #695) 2018-01-08 10:51:00 +01:00
f55a42a835 ENH: improve robustness of scalarRanges from string (fixes #673)
- now avoid Istream and token mechanism in favour of a simpler string
  parser. This makes the code clearer, smaller, robuster.

- provide convenience ge/gt/le/lt static constructors for scalarRange
  for using bounds directly with specifying via a string parameter.

- scalarRange, scalarRanges now follow the unary predicate pattern
  (using an operator() for testing). This allows their reuse in
  other contexts. Eg, for filtering operations:

      myHash.filterValues(scalarRange::ge(100));

- remove unused scalarRanges methods that were specific to handling
  lists of time values. These were superseded by timeSelector methods
  several versions ago.
2018-01-08 09:59:04 +01:00
a8c2e99dc4 CONFIG: updated completion_cache 2017-12-30 21:16:17 +00:00
2fe7d0c00b STYLE: update BuildIssues with CGAL mpfr-none problem (issue #674)
- add some notes about 'git submodule' in modules/README.md
2017-12-21 10:38:57 +01:00
995c55b60e CONFIG: add clang third-party lib to LD_LIBRARY_PATH
- required if there is no system openmp and libomp or libgomp are
  only found in the clang hierarchy

STYLE: add some notes in the openmp rules.

- the _OPENMP macro is now used in low-level testing files
2017-12-19 16:07:15 +01:00
00325db33b ENH: additional options for transforming points (closes #660)
- The -rotate-angle option allows convenient specification of a
  rotation about an arbitrary axis. Eg, -rotate-angle '((1 1 1) 45)'

- The -origin option can be used to temporarily shift the origin
  for the rotation operations. For example,

      -origin '(0 0 1)' -rotate-angle '((1 0 0) 180)'

  for mirroring.
2017-12-19 11:24:08 +01:00
19c3875a14 CONFIG: update tcsh completion_cache to include finiteArea and cfmesh
- include bash completion for paraFoam, and provision for using
  foamEtcFile as well.
2017-12-18 14:26:49 +01:00