Commit Graph

973 Commits

Author SHA1 Message Date
2b249e1ad3 STYLE: avoid default copyright assignment when generating from code templates 2017-07-11 08:58:52 +02:00
9097801105 STYLE: additional divisions for code templates 2017-07-11 08:48:10 +02:00
e7da4f0d07 TUT: adjust surfaceFeatureExtractDict to remove optional sub-dictionary
- as of v1706
  extractFromSurfaceCoeffs { ... } is an optional subdictionary
2017-07-07 15:41:18 +02:00
c50368ecc6 ENH: add trapFpe and setNaN optimisationSwitch (issue #517)
- allows configuration without an environment variable.
  For compatibility still respect FOAM_SIGFPE and FOAM_SETNAN
  env-variables

- The env-variables are now treated as true/false switch values.
  Previously there was just a check for env exists or not, but this
  can be fairly fragile for a user's environment.
2017-07-05 17:49:37 +02:00
e54a930dcc ENH: add mpiBufferSize optimisationSwitch (issue #517)
- allows configuration without an environment variable.
  For compatibility still respect MPI_BUFFER_SIZE env-variable.
2017-07-05 15:52:44 +02:00
a2d8e6e4f5 STYLE: remove old references to 'dx' and 'foamFile' 2017-06-28 16:11:24 +02:00
b39eece156 CONFIG: revert to openmpi-1.10.4
- this is the same version as OpenFOAM-1612 shipped with and seems to
  have fewer issues than the newer openmpi-2.1.1
2017-06-28 13:37:50 +02:00
fb4a51cf16 CONFIG: update bashcompletions 2017-06-27 15:59:18 +02:00
4971cedc2a CONFIG: cleanup bash completions in unset 2017-06-26 11:09:05 +02:00
feab8e94a8 ENH: restrict aliases, completions to interactive shells
- minor cleanup of bash completion script
2017-06-21 08:09:15 +01:00
81018090a6 CONFIG: bump openmpi version to latest (2.1.1)
- adjust mesa, vtk versions to the latest
2017-06-21 08:36:52 +01:00
2d530401fd ENH: add foamToVTK -name option
- as per foamToEnsight, foamToEnsightParts.
  Allows the user to specify different output directories.
2017-06-14 08:14:24 +02:00
98cc0fc004 ENH: upgrade writeVTK function object -> vtkWrite function object
- user-selectable format (vtk or vtu, ascii or binary)
- dictionary syntax closer to ensightWrite
- tutorial example in windAroundBuildings
2017-06-14 01:48:32 +02:00
edc1bd2230 CONFIG: bump paraview version 2017-06-12 14:57:56 +02:00
6d649ddf1f STYLE: prefix bash completion functions with '_of_' for easier removal 2017-06-14 11:46:10 +02:00
685d6a0e72 CONFIG: avoid bash completions for non-bash shells (eg, dash, ksh, zsh) 2017-06-14 11:22:51 +02:00
ba5f79a8e5 ENH: suppress unset -f warnings for bash completions 2017-06-14 10:22:39 +02:00
fd665b4a3c ENH: overset: Initial release of overset capability.
Adds overset discretisation to selected physics:
- diffusion : overLaplacianDyMFoam
- incompressible steady : overSimpleFoam
- incompressible transient : overPimpleDyMFoam
- compressible transient: overRhoPimpleDyMFoam
- two-phase VOF: overInterDyMFoam

The overset method chosen is a parallel, fully implicit implementation
whereby the interpolation (from donor to acceptor) is inserted as an
adapted discretisation on the donor cells, such that the resulting matrix
can be solved using the standard linear solvers.

Above solvers come with a set of tutorials, showing how to create and set-up
simple simulations from scratch.
2017-06-14 09:51:02 +01:00
caf9a0870d ENH: Added bash completion for OpenFOAM applications 2017-06-08 16:24:06 +01:00
67237e9385 CONFIG: adjust boost,CGAL versions 2017-05-29 17:18:26 +02:00
76c39302dd CONFIG: add compiler config for Gcc 7.1.0 2017-05-29 15:20:56 +02:00
2af602c2f4 STYLE: for Istream/Ostream check() use FUNCTION_NAME in messages 2017-05-26 10:59:16 +02:00
757cc7a15d BUG: cshrc: account for lsof printing mount point after files
Some versions of lsof print the mount point (if remote) after the
script path:
    /hosts/mymachine/OpenFOAM/OpenFOAM-plus.develop/etc/cshrc (mymachine:/home)
This now gets filtered out.
2017-05-25 10:43:57 +01:00
2e9bead519 MRG: merged develop line back into integration branch 2017-05-18 11:11:12 +01:00
91b90da4f3 Integrated Foundation code to commit 104aac5 2017-05-17 16:35:18 +01:00
5c51836501 The "<type>Coeffs" sub-dictionary is now optional for most model parameters
except turbulence and lagrangian which will also be updated shortly.

For example in the nonNewtonianIcoFoam offsetCylinder tutorial the viscosity
model coefficients may be specified in the corresponding "<type>Coeffs"
sub-dictionary:

transportModel  CrossPowerLaw;

CrossPowerLawCoeffs
{
    nu0         [0 2 -1 0 0 0 0]  0.01;
    nuInf       [0 2 -1 0 0 0 0]  10;
    m           [0 0 1 0 0 0 0]   0.4;
    n           [0 0 0 0 0 0 0]   3;
}

BirdCarreauCoeffs
{
    nu0         [0 2 -1 0 0 0 0]  1e-06;
    nuInf       [0 2 -1 0 0 0 0]  1e-06;
    k           [0 0 1 0 0 0 0]   0;
    n           [0 0 0 0 0 0 0]   1;
}

which allows a quick change between models, or using the simpler

transportModel  CrossPowerLaw;

nu0         [0 2 -1 0 0 0 0]  0.01;
nuInf       [0 2 -1 0 0 0 0]  10;
m           [0 0 1 0 0 0 0]   0.4;
n           [0 0 0 0 0 0 0]   3;

if quick switching between models is not required.

To support this more convenient parameter specification the inconsistent
specification of seedSampleSet in the streamLine and wallBoundedStreamLine
functionObjects had to be corrected from

    // Seeding method.
    seedSampleSet   uniform;  //cloud; //triSurfaceMeshPointSet;

    uniformCoeffs
    {
        type        uniform;
        axis        x;  //distance;

        // Note: tracks slightly offset so as not to be on a face
        start       (-1.001 -0.05 0.0011);
        end         (-1.001 -0.05 1.0011);
        nPoints     20;
    }

to the simpler

    // Seeding method.
    seedSampleSet
    {
        type        uniform;
        axis        x;  //distance;

        // Note: tracks slightly offset so as not to be on a face
        start       (-1.001 -0.05 0.0011);
        end         (-1.001 -0.05 1.0011);
        nPoints     20;
    }

which also support the "<type>Coeffs" form

    // Seeding method.
    seedSampleSet
    {
        type        uniform;

        uniformCoeffs
        {
            axis        x;  //distance;

            // Note: tracks slightly offset so as not to be on a face
            start       (-1.001 -0.05 0.0011);
            end         (-1.001 -0.05 1.0011);
            nPoints     20;
        }
    }
2017-04-20 09:14:48 +01:00
ea257737df codeTemplates: The copyright year is now set automatically 2017-04-18 11:01:41 +01:00
7f01a4beda CONFIG: address differences between shells
- suppress error messages that appear with zsh.
  According to unset(1p), 'unset -f' unsets a function.
  If the function was not previously defined, this is a no-op.
  This is similar for zsh, but there it emits a warning if the
  function was not previously defined.

- avoid 'local' in functions sources from etc/bashrc.
  ksh does not support this.

- use 'command' shell builtin instead of 'type'.
  Seems to be more consistent between shell flavours.
2017-04-20 11:02:54 +02:00
d4c7d8c6e5 ENH: add possibility to enable/disable profiling globally (issue #441)
- use InfoSwitch to disable, or via static method.

- respect the state of the argList banner when deciding to emit
  initialization information. Can otherwise end up with unwanted
  output rubbish on things like foamDictionary and foamListTimes.
2017-04-19 17:04:37 +02:00
27776b09b0 ENH: support default profiling settings from etc/controlDict (issue #441)
- patch from Bernhard Gschaider
2017-04-19 01:20:51 +02:00
bfd376a8fa COMP: cleanup linking of MGridGen
- use similar semantics as used for dealing with metis, scotch
2017-04-18 18:46:11 +02:00
861b273e56 externalWallHeatFluxTemperatureFvPatchScalarField: Added "power" heat source option
by combining with and rationalizing functionality from
turbulentHeatFluxTemperatureFvPatchScalarField.
externalWallHeatFluxTemperatureFvPatchScalarField now replaces
turbulentHeatFluxTemperatureFvPatchScalarField which is no longer needed and has
been removed.

Description
    This boundary condition applies a heat flux condition to temperature
    on an external wall in one of three modes:

      - fixed power: supply Q
      - fixed heat flux: supply q
      - fixed heat transfer coefficient: supply h and Ta

    where:
    \vartable
        Q  | Power [W]
        q  | Heat flux [W/m^2]
        h  | Heat transfer coefficient [W/m^2/K]
        Ta | Ambient temperature [K]
    \endvartable

    For heat transfer coefficient mode optional thin thermal layer resistances
    can be specified through thicknessLayers and kappaLayers entries.

    The thermal conductivity \c kappa can either be retrieved from various
    possible sources, as detailed in the class temperatureCoupledBase.

Usage
    \table
    Property     | Description                 | Required | Default value
    mode         | 'power', 'flux' or 'coefficient' | yes |
    Q            | Power [W]                   | for mode 'power'     |
    q            | Heat flux [W/m^2]           | for mode 'flux'     |
    h            | Heat transfer coefficient [W/m^2/K] | for mode 'coefficent' |
    Ta           | Ambient temperature [K]     | for mode 'coefficient' |
    thicknessLayers | Layer thicknesses [m] | no |
    kappaLayers  | Layer thermal conductivities [W/m/K] | no |
    qr           | Name of the radiative field | no | none
    qrRelaxation | Relaxation factor for radiative field | no | 1
    kappaMethod  | Inherited from temperatureCoupledBase | inherited |
    kappa        | Inherited from temperatureCoupledBase | inherited |
    \endtable

    Example of the boundary condition specification:
    \verbatim
    <patchName>
    {
        type            externalWallHeatFluxTemperature;

        mode            coefficient;

        Ta              uniform 300.0;
        h               uniform 10.0;
        thicknessLayers (0.1 0.2 0.3 0.4);
        kappaLayers     (1 2 3 4);

        kappaMethod     fluidThermo;

        value           $internalField;
    }
    \endverbatim
2017-04-08 22:06:41 +01:00
5d15a13247 STYLE: use FOAM_UTILITIES in Make/options
- consistent with use of FOAM_SOLVERS, and reduces reliance on the FOAM_APP
  env variable
2017-04-07 08:17:43 +02:00
eb6fb7f7e3 ENH: make FOAM_EXT_LIBBIN optional in the configuration files
- useful for builds that don't use the ThirdParty directory at all
2017-04-04 17:11:36 +02:00
dd78e042fe ENH: reduce reliance on FOAM_EXT_LIBBIN during builds
- just check WM_PROJECT_DIR instead.

- provide a fallback value when FOAM_EXT_LIBBIN might actually be needed.

Only strictly need FOAM_EXT_LIBBIN for scotch/metis decomposition, and
when these are actually supplied by ThirdParty.
All other ThirdParty dependencies are referenced by BOOST_ARCH_PATH etc.

Can therefore drop the FOAM_EXT_LIBBIN dependency for VTK-related
things, which do not use scotch/metis anyhow.
2017-04-04 15:28:42 +02:00
0a20a8177f template cases: added minor comment to blockMeshDict files 2017-04-04 12:36:50 +01:00
8bfaa34e24 template cases: added nCellsBetweenLevels to snappyHexMeshDict files 2017-04-04 12:33:17 +01:00
97e84f5880 template cases: added cylindrical background mesh in rotating geometry cases
snappyHexMesh produces a far better quality AMI interface using a cylindrical background mesh,
leading to much more robust performance, even on a relatively coarse mesh.  The min/max AMI
weights remain close to 1 as the mesh moves, giving better conservation.

The rotating geometry template cases are configured with a blockMeshDict file for a cylindrical
background mesh aligned along the z-axis.  The details of use are found in the README and
blockMeshDict files.
2017-04-04 12:24:01 +01:00
5617219185 template cases: minor edit to README files 2017-04-04 11:48:29 +01:00
ede46c3cae template cases: added pre-commented external patches to blockMeshDict
Uncommenting the patches provides a convenient way to use the patches in the background mesh
to define the external boundary of the final mesh.  Replaces previous setup with a separate
blockMeshDict.extPatches file.
2017-04-04 10:47:04 +01:00
91b0a9379b STYLE: mention clang-4.0 in the bashrc, cshrc files 2017-04-03 08:31:04 +02:00
ae0718a0f5 BUG: avoid absolute path for 'lsof'
- has different locations on different systems
  (eg, /usr/bin/lsof or /sbin/lsof)
2017-04-03 08:31:04 +02:00
af49eaf625 ENH: default jobControl now under the '~/.OpenFOAM/jobControl' directory
- this implies that jobControl is a user-resource for OpenFOAM.
  It was previously located under $WM_PROJECT_INST_DIR/jobControl,
  but few users will have write access there.

- an unset FOAM_JOB_DIR variable is treated as "~/.OpenFOAM/jobControl",
  which can partially reduce environment clutter.

- provide argList::noJobInfo() to conveniently suppress job-info on an
  individual basis for short-running utilities (eg, foamListTimes) to
  avoid unneeded clutter.
2017-04-03 08:28:15 +02:00
332c8acdcd ENH: Clean-up after latest Foundation integrations 2017-03-31 15:36:28 +01:00
fb724ce113 MRG: Integrated Foundation code to commit 9f37c3c 2017-03-31 15:34:28 +01:00
3ece6e521a ENH: improve MPI configuration possibilities
- permit SYSTEMMPI user adjustments via
      etc/config.{csh,sh}/mpi-system
  This can be a convenient place for setting up SYSTEMMPI for OpenFOAM
  without adjusting bashrc, prefs.sh ...

- add a USERMPI type. This represents any generic mpi implementation.
  The user is responsible for supplying an appropriate
  wmake/rules/General/mplibUSERMPI file and managing all settings.

  This type of setup can be useful in combination with specific build
  systems (SPACK, EASYBUILD, etc) or module systems for which the MPI
  variant is part of the installed configuration.
2017-03-29 13:48:54 +02:00
45381b1085 MRG: Integrated Foundation code to commit 19e602b 2017-03-28 11:30:10 +01:00
3b983739d2 postProcessing: changed isosurface to use isoSurfaceCell algorithm 2017-03-24 11:40:36 +00:00
dcb1a95e35 MRG: Integrated Foundation code to commit 7d6845d 2017-03-23 14:33:33 +00:00
04c3d535b0 MRG: Integrated Foundation code to commit 47bd8e1 2017-03-23 10:12:38 +00:00