Commit Graph

311 Commits

Author SHA1 Message Date
9a864bdd85 GIT: Resolved merge conflict when merging develop branch 2017-05-24 12:30:09 +01:00
b5ed93a40a ENH: orientedFields - refectored and simplified usage 2017-05-24 12:26:12 +01:00
ff132ff5f6 ENH: orientedFields - updated mapping and parallel utils 2017-05-04 15:32:51 +01:00
db5348880e MRG: resolved merge conflicts from merge from develop branch 2017-05-19 16:29:54 +01:00
bb67ccd37d ENH: Cleaned up hash table item found checks 2017-05-19 11:15:35 +01:00
3814762785 ENH: relocate triSurface classes into surfMesh library (issue #294)
- simplifies organization, includes, linkage etc.
2017-05-18 10:42:05 +02:00
2e9bead519 MRG: merged develop line back into integration branch 2017-05-18 11:11:12 +01:00
91b90da4f3 Integrated Foundation code to commit 104aac5 2017-05-17 16:35:18 +01:00
5c51836501 The "<type>Coeffs" sub-dictionary is now optional for most model parameters
except turbulence and lagrangian which will also be updated shortly.

For example in the nonNewtonianIcoFoam offsetCylinder tutorial the viscosity
model coefficients may be specified in the corresponding "<type>Coeffs"
sub-dictionary:

transportModel  CrossPowerLaw;

CrossPowerLawCoeffs
{
    nu0         [0 2 -1 0 0 0 0]  0.01;
    nuInf       [0 2 -1 0 0 0 0]  10;
    m           [0 0 1 0 0 0 0]   0.4;
    n           [0 0 0 0 0 0 0]   3;
}

BirdCarreauCoeffs
{
    nu0         [0 2 -1 0 0 0 0]  1e-06;
    nuInf       [0 2 -1 0 0 0 0]  1e-06;
    k           [0 0 1 0 0 0 0]   0;
    n           [0 0 0 0 0 0 0]   1;
}

which allows a quick change between models, or using the simpler

transportModel  CrossPowerLaw;

nu0         [0 2 -1 0 0 0 0]  0.01;
nuInf       [0 2 -1 0 0 0 0]  10;
m           [0 0 1 0 0 0 0]   0.4;
n           [0 0 0 0 0 0 0]   3;

if quick switching between models is not required.

To support this more convenient parameter specification the inconsistent
specification of seedSampleSet in the streamLine and wallBoundedStreamLine
functionObjects had to be corrected from

    // Seeding method.
    seedSampleSet   uniform;  //cloud; //triSurfaceMeshPointSet;

    uniformCoeffs
    {
        type        uniform;
        axis        x;  //distance;

        // Note: tracks slightly offset so as not to be on a face
        start       (-1.001 -0.05 0.0011);
        end         (-1.001 -0.05 1.0011);
        nPoints     20;
    }

to the simpler

    // Seeding method.
    seedSampleSet
    {
        type        uniform;
        axis        x;  //distance;

        // Note: tracks slightly offset so as not to be on a face
        start       (-1.001 -0.05 0.0011);
        end         (-1.001 -0.05 1.0011);
        nPoints     20;
    }

which also support the "<type>Coeffs" form

    // Seeding method.
    seedSampleSet
    {
        type        uniform;

        uniformCoeffs
        {
            axis        x;  //distance;

            // Note: tracks slightly offset so as not to be on a face
            start       (-1.001 -0.05 0.0011);
            end         (-1.001 -0.05 1.0011);
            nPoints     20;
        }
    }
2017-04-20 09:14:48 +01:00
dd78e042fe ENH: reduce reliance on FOAM_EXT_LIBBIN during builds
- just check WM_PROJECT_DIR instead.

- provide a fallback value when FOAM_EXT_LIBBIN might actually be needed.

Only strictly need FOAM_EXT_LIBBIN for scotch/metis decomposition, and
when these are actually supplied by ThirdParty.
All other ThirdParty dependencies are referenced by BOOST_ARCH_PATH etc.

Can therefore drop the FOAM_EXT_LIBBIN dependency for VTK-related
things, which do not use scotch/metis anyhow.
2017-04-04 15:28:42 +02:00
45381b1085 MRG: Integrated Foundation code to commit 19e602b 2017-03-28 11:30:10 +01:00
b708c23cfc ENH: Clean-up after latest Foundation integrations 2017-03-27 14:34:01 +01:00
399df1a20d ENH: also accept 'lib' for metis and scotch libraries
- this corresponds to what various module or build systems provide.
  ThirdParty builds are unaffected since they install into FOAM_EXT_LIBBIN
2017-03-21 16:55:27 +01:00
96ad725a0b Updated UPstream::commsTypes to use the C++11 enum class 2017-03-10 19:54:55 +00:00
383fdb04ae COMP: suppress warnings about MPI old-style cast (GCC only) 2017-03-10 10:27:17 +01:00
c1ca2f4a38 BUG: missing chdir in Allwclean for wallFunctionTable
STYLE: improve consistency in Allwclean scripts
2017-02-23 01:07:10 +01:00
957635200a ENH: build into build/ directory instead of platforms/ (issue #312)
- makes it slightly easier when packaging various binaries, or when
  building packages for installation via modules etc.
2017-02-10 20:30:15 +01:00
3d02c8a530 ENH: improve isolation of shell variables in wmake scripts
- reduces unexpected interactions between various make elements
2017-02-10 16:13:54 +01:00
0ffae6461a ENH: creating a bounding box without points yields an inverted box
- The code create a box with a (0,0,0) point.
  The new definition is more logical and makes it very easy to grow
  the bounding box to include new points. It also simplifies much of
  the logic in the constructors.

- Use ROOTVGREAT instead of VGREAT for sizing greatBox and invertedBox.
  Avoids some overflow issues reported by Mattijs (thus GREAT has been
  used in treeBoundBox), but might still need further revision.
2017-02-01 12:15:00 +00:00
af4429f94c STYLE: reduce bounding box list via list-combine-gather/scatter 2017-01-25 23:03:41 +01:00
722d23f59c ENH: additional methods/operators for boundBox (related to #196)
- Constructor for bounding box of a single point.

- add(boundBox), add(point) ...
  -> Extend box to enclose the second box or point(s).

  Eg,
      bb.add(pt);
  vs.
      bb.min() = Foam::min(bb.min(), pt);
      bb.max() = Foam::max(bb.max(), pt);

Also works with other bounding boxes.
  Eg,
      bb.add(bb2);
      // OR
      bb += bb2;
  vs.
      bb.min() = Foam::min(bb.min(), bb2.min());
      bb.max() = Foam::max(bb.max(), bb2.max());

'+=' operator allows the reduction to be used in parallel
gather/scatter operations.

A global '+' operator is not currently needed.

Note: may be useful in the future to have a 'clear()' method
that resets to a zero-sized (inverted) box.

STYLE: make many bounding box constructors explicit
2017-01-25 19:26:50 +01:00
17d76e6261 ENH: boundBox 'reduce' method (related to #196)
reduce()
- parallel reduction of min/max values.
  Reduces coding for the callers.

  Eg,
      bb.reduce();

  instead of the previous method:
      reduce(bb.min(), minOp<point>());
      reduce(bb.max(), maxOp<point>());

STYLE:

- use initializer list for creating static content
- use point::min/point::max when defining standard boxes
2017-01-25 18:52:37 +01:00
608bb5d83b COMP: update lnInclude directories when building (issue #364)
- Could be related to interrupted builds.
  So if there are any parts of the build that rely on an explicit
  'wmakeLnInclude', make sure that the contents are properly updated.

--

ENH: improved feedback from top-level Allwmake

- Report which section (libraries, applications) is being built.

- Provide final summary of date, version, etc, which can be helpful
  for later diagnosis or record keeping.

- The -log=XXX option for Allwmake now accepts a directory name
  and automatically appends an appropriate log name.
  Eg,
      ./Allwmake -log=logs/  ->> logs/log.linux64GccDPInt32Opt

  The default name is built from the value of WM_OPTIONS.

--

BUG: shell not exiting properly in combination with -log option

- the use of 'tee' causes the shell to hang around.
  Added an explicit exit to catch this.

--

- Detecting the '-k' (-non-stop) option at the top-level Allwmake, which
  may improve robustness.

- Explicit continue-on-error for foamyMesh (as optional component)

- unify format of script messages for better readability

COMP: reduce warnings when building Pstream (old-style casts in openmpi)
2016-12-22 11:26:29 +01:00
c0f44ac4f3 MRG: Integrated foundation code 2016-12-12 12:10:29 +00:00
2c7eff8d6b Merge remote-tracking branch 'origin/feature-cellSetRemove' into develop 2016-12-07 14:13:00 +00:00
4a77294c7c ENH: renumberMesh: remove old files 2016-12-05 15:24:52 +00:00
2b551d8751 metisDecomp: Corrected return from metisDecomp::decompose
Resolves bug-report http://bugs.openfoam.org/view.php?id=2370
2016-12-03 19:26:21 +00:00
6534b58784 processorMeshes::read destruct before de-register
Patch contributed by Mattijs Janssens
Resolves bug-report http://bugs.openfoam.org/view.php?id=2368
2016-12-01 22:07:50 +00:00
450d84bd77 BUG: surfaceNormalFixedValue: do not use ptf.patch(). Fixes #319 2016-12-01 14:31:22 +00:00
55ed6ec776 STYLE: use MUST_READ consistently for decomposeParDict
- there was a slight mix of MUST_READ and MUST_READ_IF_MODIFIED
  but with no obvious code to handle runtime modified values
  of the decomposition, or how this works with alternative
  dictionaries.
2016-11-24 11:26:03 +01:00
d9740aa33e ENH: redistributePar: remove pointFields 2016-11-21 17:20:34 +00:00
ae3d2f4d57 ENH: topoSet: clear sets upon writing modified mesh. Fixes #129. 2016-11-16 14:58:46 +00:00
704620aea1 ENH: simplify check for metis sizes (issue #290)
- Now that the metisDecomp uses the metis definition for float/double,
  do not need to verify the scalar sizes.

Note:
- could drop precision qualifier for metis, scotch installation
  (include, lib) as being unneeded, but it is simpler to keep them
  and continue to use the FOAM_EXT_LIBBIN path
  (in case other ThirdParty software is compiled with different
  precisions).
2016-11-13 19:53:11 +01:00
80db302666 Allwmake: Remove 'set -x' which generates a lot of noise
'set -x' should be used for debugging.

Added command printing into wmake and Allwmake as a replacement for
'set -x' to log current target.
2016-11-13 18:08:22 +00:00
0b4ff45541 metisDecomp: Use real_t for processor weights
Based on patch contributed by Alexey Matveichev
Resolves feature-request http://bugs.openfoam.org/view.php?id=2330
2016-11-12 09:03:56 +00:00
d37e86d185 metisDecomp: Use real_t for processor weights
Based on patch contributed by Alexey Matveichev
Resolves feature-request http://bugs.openfoam.org/view.php?id=2330
2016-11-12 09:03:56 +00:00
b048cacc7b ENH: robuster handling of system or central installation (issue #290)
- Follow similar pattern as per boost/CGAL with the '*-none' to disable,
  and '*-system' for system installations.

  Also support central non-ThirdParty installations by specifying the
  version as "*-system", but also providing the fully qualified
  *_ARCH_PATH too.

--
ENH: Verify label and scalar sizes used in the metis header.

- ensure they match with expected values, which can be obtained via
  the OpenFOAM definitions for WM_LABEL_SIZE and WM_PRECISION_OPTION
2016-11-09 11:10:53 +01:00
1f2ba25184 STYLE: inconsistency in scotch, metis library locations (issue #290)
- Only reference the FOAM_EXT_LIBBIN locations when linking.
  The respective SCOTCH_ARCH_PATH/lib, METIS_ARCH_PATH/lib locations
  either do not exist, or are possibly inconsistent and won't be
  seen at run-time anyhow.

- Incorporate decompose/metisDecomp/Allwmake into the top-level
  decompose/Allwmake
2016-11-04 20:01:44 +01:00
7c106cd43e GIT: Resolved conflict 2016-10-04 09:45:46 +01:00
1c2aadb8d8 ENH: distributedTriSurfaceMesh: bail out if getting stuck due to precision errors 2016-09-28 12:26:23 +01:00
47eb24bed5 GIT: Resolved conflicts arising from merge with develop branch 2016-09-26 10:57:34 +01:00
9fbd612672 GIT: Initial state after latest Foundation merge 2016-09-20 14:49:08 +01:00
04300070cf BUG: metisDecomp compile failure for WM_DP (closes #232)
- spurious use of floatScalar instead of scalar for processor weights.

STYLE: partially updated dummy metis.h to reflect metis-5.1.0 API
2016-09-13 08:51:03 +02:00
15fda67bbc decomposePar: corrected decomposeParDict read using -region option
Patch contributed by Mattijs Janssens
Resolves bug-report http://bugs.openfoam.org/view.php?id=2227
2016-09-03 20:54:16 +01:00
a778622dfa src/parallel/decompose: Remove dependency on "SCOTCH_ROOT" and repair "decompose/Allwclean"
Patch contributed by Bruno Santos
Resolves patch request http://bugs.openfoam.org/view.php?id=2212
2016-08-23 21:53:35 +01:00
58f905ff70 C++11: Replaced the C NULL with the safer C++11 nullptr
Requires gcc version 4.7 or higher
2016-08-05 17:19:38 +01:00
2564362542 decomposePar: Speed-up decomposing with constraints
Patch contributed by Mattijs Janssens
Resolves bug-report http://bugs.openfoam.org/view.php?id=2159
2016-07-22 17:19:21 +01:00
ab84d6941f Updated template formatting to C++11 2016-07-12 20:03:29 +01:00
dea6a3c6e8 wmake/Allwmake: Completed support for targetType 'objects'
Patch contributed by Mattijs Janssens
2016-06-24 15:25:11 +01:00
6a53ed41ba Doxygen documentation: Standardized the 'See also' heading 2016-06-17 17:31:34 +01:00