Commit Graph

65 Commits

Author SHA1 Message Date
c0f44ac4f3 MRG: Integrated foundation code 2016-12-12 12:10:29 +00:00
bf326cc4f7 fileModification: time checking now with nano-second precision
fileModificationSkew: now a floating-point number to support sub-second
specification.

Patch contributed by Mattijs Janssens
2016-11-25 15:36:10 +00:00
8b4dfe24f1 Merge remote-tracking branch 'origin/decomposeParDict' into develop 2016-11-19 15:34:36 +01:00
af81184ecf MRG: Resolve conflict with latest foundation merge 2016-10-26 15:37:15 +01:00
52d0289ee1 BUG: resolve some decomposeParDict problems (issues #60, #265).
- Cleanup/centralize handling of -decomposeParDict by relocating
  common code into argList. Ensures that all processes receive
  identical information about the -decomposeParDict opton.

- Only use alternative decomposeParDict for simpleFoam/motorBike
  tutorial so that this will be included in the test loop for snappy.

- Added Mattijs' fix for surfaceRedistributePar.
2016-10-25 18:19:19 +02:00
48a2356953 fieldTypes: Using C++11 __VA_ARGS__ functionality created the FOR_ALL_FIELD_TYPES macro
This supports the abstraction of the set of fields from the field code
generation macros making it easier to change the set of fields supported
by OpenFOAM.  This functionality is demonstrated in the updated
fvPatchFields macros and will be applied to the rest of the field code
generation macros in the future.
2016-10-03 09:08:01 +01:00
9fbd612672 GIT: Initial state after latest Foundation merge 2016-09-20 14:49:08 +01:00
e2935fa680 Merge branch 'fix-systemcall' into 'develop'
replace system() call with vfork/exec combination (issue #185)

Tested systemCall function object, dynamicCode, but should be rechecked with IB+openmpi
@Prashant

See merge request !55
2016-07-26 15:26:00 +01:00
8bb78dda60 ENH: provide a vfork/exec version of system (issue #185)
The normal library system() command uses 'fork', which causes
problems on IB+OPENMPI.

STYLE: add Foam:: qualifier to system calls to make them easier to spot.
2016-07-18 13:37:39 +02:00
be73d81a22 ENH: support '-profiling' command-line option
- this option overrides any controlDict settings as a convenient means
  to selecting profiling without messing with the controlDict.

- provide Profiling::writeNow() to emit profiling for utilities that
  don't have any natural time increment mechanism to trigger it.
2016-06-17 23:45:03 +02:00
6000ea217f postProcess: Added '-list' option to list the available configured functionObjects 2016-06-01 16:28:07 +01:00
e4dc50dcb0 postProcessing: Replaced 'foamCalc' and the 'postCalc' utilities
with the more general and flexible 'postProcess' utility and '-postProcess' solver option

Rationale
---------

Both the 'postProcess' utility and '-postProcess' solver option use the
same extensive set of functionObjects available for data-processing
during the run avoiding the substantial code duplication necessary for
the 'foamCalc' and 'postCalc' utilities and simplifying maintenance.
Additionally consistency is guaranteed between solver data processing
and post-processing.

The functionObjects have been substantially re-written and generalized
to simplify development and encourage contribution.

Configuration
-------------

An extensive set of simple functionObject configuration files are
provided in

OpenFOAM-dev/etc/caseDicts/postProcessing

and more will be added in the future.  These can either be copied into
'<case>/system' directory and included into the 'controlDict.functions'
sub-dictionary or included directly from 'etc/caseDicts/postProcessing'
using the '#includeEtc' directive or the new and more convenient
'#includeFunc' directive which searches the
'<etc>/caseDicts/postProcessing' directories for the selected
functionObject, e.g.

functions
{
    #includeFunc Q
    #includeFunc Lambda2
}

'#includeFunc' first searches the '<case>/system' directory in case
there is a local configuration.

Description of #includeFunc
---------------------------

    Specify a functionObject dictionary file to include, expects the
    functionObject name to follow (without quotes).

    Search for functionObject dictionary file in
    user/group/shipped directories.
    The search scheme allows for version-specific and
    version-independent files using the following hierarchy:
    - \b user settings:
      - ~/.OpenFOAM/\<VERSION\>/caseDicts/postProcessing
      - ~/.OpenFOAM/caseDicts/postProcessing
    - \b group (site) settings (when $WM_PROJECT_SITE is set):
      - $WM_PROJECT_SITE/\<VERSION\>/caseDicts/postProcessing
      - $WM_PROJECT_SITE/caseDicts/postProcessing
    - \b group (site) settings (when $WM_PROJECT_SITE is not set):
      - $WM_PROJECT_INST_DIR/site/\<VERSION\>/caseDicts/postProcessing
      - $WM_PROJECT_INST_DIR/site/caseDicts/postProcessing
    - \b other (shipped) settings:
      - $WM_PROJECT_DIR/etc/caseDicts/postProcessing

    An example of the \c \#includeFunc directive:
    \verbatim
        #includeFunc <funcName>
    \endverbatim

postProcess
-----------

The 'postProcess' utility and '-postProcess' solver option provide the
same set of controls to execute functionObjects after the run either by
reading a specified set of fields to process in the case of
'postProcess' or by reading all fields and models required to start the
run in the case of '-postProcess' for each selected time:

postProcess -help

Usage: postProcess [OPTIONS]
options:
  -case <dir>       specify alternate case directory, default is the cwd
  -constant         include the 'constant/' dir in the times list
  -dict <file>      read control dictionary from specified location
  -field <name>     specify the name of the field to be processed, e.g. U
  -fields <list>    specify a list of fields to be processed, e.g. '(U T p)' -
                    regular expressions not currently supported
  -func <name>      specify the name of the functionObject to execute, e.g. Q
  -funcs <list>     specify the names of the functionObjects to execute, e.g.
                    '(Q div(U))'
  -latestTime       select the latest time
  -newTimes         select the new times
  -noFunctionObjects
                    do not execute functionObjects
  -noZero           exclude the '0/' dir from the times list, has precedence
                    over the -withZero option
  -parallel         run in parallel
  -region <name>    specify alternative mesh region
  -roots <(dir1 .. dirN)>
                    slave root directories for distributed running
  -time <ranges>    comma-separated time ranges - eg, ':10,20,40:70,1000:'
  -srcDoc           display source code in browser
  -doc              display application documentation in browser
  -help             print the usage

 pimpleFoam -postProcess -help

Usage: pimpleFoam [OPTIONS]
options:
  -case <dir>       specify alternate case directory, default is the cwd
  -constant         include the 'constant/' dir in the times list
  -dict <file>      read control dictionary from specified location
  -field <name>     specify the name of the field to be processed, e.g. U
  -fields <list>    specify a list of fields to be processed, e.g. '(U T p)' -
                    regular expressions not currently supported
  -func <name>      specify the name of the functionObject to execute, e.g. Q
  -funcs <list>     specify the names of the functionObjects to execute, e.g.
                    '(Q div(U))'
  -latestTime       select the latest time
  -newTimes         select the new times
  -noFunctionObjects
                    do not execute functionObjects
  -noZero           exclude the '0/' dir from the times list, has precedence
                    over the -withZero option
  -parallel         run in parallel
  -postProcess      Execute functionObjects only
  -region <name>    specify alternative mesh region
  -roots <(dir1 .. dirN)>
                    slave root directories for distributed running
  -time <ranges>    comma-separated time ranges - eg, ':10,20,40:70,1000:'
  -srcDoc           display source code in browser
  -doc              display application documentation in browser
  -help             print the usage

The functionObjects to execute may be specified on the command-line
using the '-func' option for a single functionObject or '-funcs' for a
list, e.g.

postProcess -func Q
postProcess -funcs '(div(U) div(phi))'

In the case of 'Q' the default field to process is 'U' which is
specified in and read from the configuration file but this may be
overridden thus:

postProcess -func 'Q(Ua)'

as is done in the example above to calculate the two forms of the divergence of
the velocity field.  Additional fields which the functionObjects may depend on
can be specified using the '-field' or '-fields' options.

The 'postProcess' utility can only be used to execute functionObjects which
process fields present in the time directories.  However, functionObjects which
depend on fields obtained from models, e.g. properties derived from turbulence
models can be executed using the '-postProcess' of the appropriate solver, e.g.

pisoFoam -postProcess -func PecletNo

or

sonicFoam -postProcess -func MachNo

In this case all required fields will have already been read so the '-field' or
'-fields' options are not be needed.

Henry G. Weller
CFD Direct Ltd.
2016-05-28 18:58:48 +01:00
6f9573bb12 etcFiles: Added functions to find directories in the 'etc' directories
'findEtcFiles' moved from OSspecific to 'etcFiles' as it is not OS-specific
2016-05-28 18:55:37 +01:00
5db3116a74 src/OpenFOAM: Moved function documentation comments into .H files and removed duplicates 2016-03-01 12:29:01 +00:00
91e04d69c1 Resolve various unimportant warning messages from Gcc, Clang and Icpc 2015-07-19 11:31:49 +01:00
8628ef2fea Corrected capitalization of Doxygen documentation comments 2015-02-14 13:10:15 +00:00
ded2f25726 Updated headers 2014-12-31 19:08:15 +00:00
325b003b6e Added and verified support for 64bit labels
To compile with 64bit labels set

WM_LABEL_SIZE=64

in ~/OpenFOAM/dev/prefs.sh

source ~/.bashrc

then Allwmake in OpenFOAM-dev.

This will build into for example OpenFOAM-dev/platforms/linux64ClangDPInt64Opt

If WM_LABEL_SIZE is unset or set to 32:

WM_LABEL_SIZE=32

the build would be placed into OpenFOAM-dev/platforms/linux64ClangDPInt32Opt

Thus both 32bit and 64bit label builds can coexist without problem.
2014-12-31 19:02:52 +00:00
2e99db9c22 ENH: OSspecific - softlink handling (fixes #164)
Links are followed in most cases, with some notable exceptions:

- mv, mvBak:
  renames the link, not the underlying file/directory

- rmDir:
  remove the symlink to a directory, does not recurse into the
  underlying directory
2014-04-23 15:00:00 +02:00
00f23290c2 ENH: addDictOption: consistent dict option handling 2012-12-05 15:10:08 +00:00
1cc1ddcacf ENH: dlOpen: check error message string 2011-10-24 21:31:38 +01:00
328f44b375 ENH: OSspecific: make userName,domainName,hostName strings 2011-10-07 16:02:59 +01:00
c2dd153a14 Copyright transfered to the OpenFOAM Foundation 2011-08-14 12:17:30 +01:00
c2d99767a2 ENH: reinstate short-circuit behaviour for findEtcFile() 2011-07-07 14:59:18 +02:00
49285512c7 etc/controlDict: add support for merging etc/controlDict with user-specialised versions 2011-07-06 12:40:06 +01:00
2a89555d0a COMP: Random: moved to OSspecific 2011-07-01 16:14:10 +01:00
da836edfc1 ENH: argList: added -noFunctionObjects to all argList 2011-06-08 14:21:51 +01:00
1a0095489b gcc-4.6.0 warnings: removed initialised but unused variables 2011-04-06 22:55:47 +01:00
cf99e5c800 ENH: codeStream: added codeLibs 2011-03-21 17:54:20 +00:00
9cbc0efca3 ENH: add support for WM_PROJECT_SITE env variable
- alternative to WM_PROJECT_INST_DIR/site for systems with locked down
  installation paths (eg, when packaged as RPM or deb)

  When "$WM_PROJECT_SITE" is defined, it is used in favour of
  "$WM_PROJECT_INST_DIR/site"
2011-03-11 18:32:18 +01:00
f2ff53f7b4 ENH: add dlSymFound() to check for existence of symbol without warnings 2011-02-25 18:19:45 +01:00
f0f2bfa632 ENH: refactor codeStreamTools, use for codedFixedValueFvPatchScalarField 2011-02-22 15:01:20 +01:00
93f408d584 COMP: dlLibraryTable: moved dlopen etc into OSspecific 2011-02-18 18:05:40 +00:00
c3cb632c24 Documentation: converted javadoc @ to LaTeX style \ in Doxygen code docs 2011-02-08 18:22:00 +00:00
67a2effece Doxygen: Updated lists in member documentation to conform to Doxygen limitations 2011-02-08 12:28:13 +00:00
eaef8d482b STYLE: Updated 1991 start copyright year to 2004 2011-01-14 16:08:00 +00:00
099cc39e2e Revert "STYLE: 2011 copyright date."
This reverts commit b18f6cc1ce.
2011-01-05 18:24:29 +00:00
b18f6cc1ce STYLE: 2011 copyright date. 2011-01-05 11:14:26 +00:00
54e9622e95 ENH: add Foam::domainName(), implemented as per 'hostname -d' from net-tools 2010-12-30 13:19:36 +01:00
9cef74b796 ENH: optional argument to hostName() to return full hostname
- value as reported by gethostbyname
2010-12-21 18:27:17 +01:00
d79237597e STYLE: Fixing code style requirements for all src. 2010-07-28 13:31:46 +01:00
d29c438657 STYLE: use url for FSF license instead of postal address, switch to GPL v3 2010-03-29 14:07:56 +02:00
1c100735cc BUG: overwrite option does not require an argument. 2010-03-02 09:50:34 +00:00
ee293cde8e ENH: add usage information for '-overwrite' option.
- make centrally available via #include "addOverwriteOption.H"
2010-02-16 11:44:27 +01:00
5e972c772f remove trailing space from some files 2009-12-04 13:39:35 +01:00
58b7e64185 Use argList::addOption, argList::addBoolOption (almost) everywhere
- ensure that the standard options (eg, from timeSelector) also have
  some usage information
2009-12-03 13:32:12 +01:00
8ff026095d added mvBak() to POSIX
- Rename to a corresponding backup file
  If the backup file already exists, attempt with "01" .. "99" suffix.

- git ignore indexed backup files too
2009-07-20 11:04:48 +02:00
359f14ae91 pass optional checkGzip through POSIX::exists() as well 2009-07-20 08:48:46 +02:00
3345fd8378 Removed support for cint. 2009-06-22 21:03:57 +01:00
8edf105c45 cleanup of time handling (cosmetic changes), used timeSelector in more places 2009-05-20 15:40:30 +02:00