Commit Graph

782 Commits

Author SHA1 Message Date
cf889306d0 ENH: added HashTable count, filter and generalized toc methods
- Generalized means over filtering table entries based on their keys,
  values, or both.  Either filter (retain), or optionally prune elements
  that satisfy the specified predicate.

  filterKeys and filterValues:
  - Take a unary predicate with the signature

        bool operator()(const Key& k);

  - filterEntries:
    Takes a binary predicate with the signature

        bool operator()(const Key& k, const T& v);

==

  The predicates can be normal class methods, or provide on-the-fly
  using a C++ lambda. For example,

      wordRes goodFields = ...;
      allFieldNames.filterKeys
      (
          [&goodFields](const word& k){ return goodFields.match(k); }
      );

  Note that all classes that can match a string (eg, regExp, keyType,
  wordRe, wordRes) or that are derived from a Foam::string (eg, fileName,
  word) are provided with a corresponding

      bool operator()(const std::string&)

  that either performs a regular expression or a literal match.
  This allows such objects to be used directly as a unary predicate
  when filtering any string hash keys.

  Note that HashSet and hashedWordList both have the proper
  operator() methods that also allow them to be used as a unary
  predicate.

- Similar predicate selection with the following:
    * tocKeys, tocValues, tocEntries
    * countKeys, countValues, countEntries

  except that instead of pruning, there is a simple logic inversion.
2017-05-17 10:18:14 +02:00
8d018e7950 ENH: added constant predicates
- predicates::always and predicates::never returning true and false,
  respectively. These simple classes make it easier when writing
  templated code.

  As well as unary and binary predicate forms, they also contain a
  match(std::string) method for compatibility with regex-based classes.

STYLE: write bool and direction as primitive 'int' not as 'label'.
2017-05-17 10:18:14 +02:00
a8d2ebf298 ENH: cleanup wordRe interfaces etc.
- ensure that the string-related classes have consistently similar
  matching methods. Use operator()(const std::string) as an entry
  point for the match() method, which makes it easier to use for
  filters and predicates. In some cases this will also permit using
  a HashSet as a match predicate.

regExp
====
- the set method now returns a bool to signal that the requested
  pattern was compiled.

wordRe
====
- have separate constructors with the compilation option (was previously
  a default parameter). This leaves the single parameter constructor
  explicit, but the two parameter version is now non-explicit, which
  makes it easier to use when building lists.

- renamed compile-option from REGEX (to REGEXP) for consistency with
  with the <regex.h>, <regex> header names etc.

wordRes
====
- renamed from wordReListMatcher -> wordRes. For reduced typing and
  since it behaves as an entity only slightly related to its underlying
  list nature.

- Provide old name as typedef and include for code transition.

- pass through some list methods into wordRes

hashedWordList
====
- hashedWordList[const word& name] now returns a -1 if the name is is
  not found in the list of indices. That has been a pending change
  ever since hashedWordList was generalized out of speciesTable
  (Oct-2010).

- add operator()(const word& name) for easy use as a predicate

STYLE: adjust parameter names in stringListOps

- reflect if the parameter is being used as a primary matcher, or the
  matcher will be derived from the parameter.
  For example,
      (const char* re), which first creates a regExp
      versus (const regExp& matcher) which is used directly.
2017-05-16 23:54:43 +02:00
6933bc3021 ENH: HashPtrTable remove/erase now include safeguard against end-iterator
- This makes the following safe:

      auto iter = ptrTable.find(unknownKey);
      ptrTable.erase(iter);

- Unmask HashPtrTable::erase(const Key& key) method
2017-05-15 09:57:25 +02:00
4b0d1632b6 BUG: hashtable key_iterator ++ operator returning incorrect type
ENH: ensure std::distance works with hashtable iterators
2017-05-14 16:58:47 +02:00
83669e284f ENH: improvements to labelRange const_iterator
- inherit from std::iterator to obtain the full STL typedefs, meaning
  that std::distance works and the following is now possible:

      labelRange range(100, 1500);
      scalarList list(range.begin(), range.end());

  --
  Note that this does not work (mismatched data-types):

      scalarList list = identity(12345);

  But this does, since the *iter promotes label to scalar:

      labelList ident = identity(12345);
      scalarList list(ident.begin(), ident.end());

  It is however more than slightly wasteful to create a labelList
  just for initializing a scalarList. An alternative could be a
  a labelRange for the same purpose.

      labelRange ident = labelRange::identity(12345);
      scalarList list(ident.begin(), ident.end());

  Or this
      scalarList list
      (
          labelRange::null.begin(),
          labelRange::identity(12345).end()
      );
2017-05-14 14:39:17 +02:00
0e7b135181 STYLE: adjust const access for linked-list iterators 'operator*'
- provides const/non-const access to the underlying list, but the
  iterator access itself is const.

- provide linked-list iterator 'found()' method for symmetry with
  hash-table iterators. Use nullptr for more clarity.
2017-05-12 12:26:28 +02:00
f73b5b629f ENH: added HashTable 'lookup' and 'retain' methods
- lookup(): with a default value (const access)
  For example,
      Map<label> something;
      value = something.lookup(key, -1);

    being equivalent to the following:

      Map<label> something;
      value = -1;  // bad value
      if (something.found(key))
      {
          value = something[key];
      }

    except that lookup also makes it convenient to handle const references.
    Eg,

      const labelList& ids = someHash.lookup(key, labelList());

- For consistency, provide a two parameter HashTable '()' operator.
  The lookup() method is, however, normally preferable when
  const-only access is to be ensured.

- retain(): the counterpart to erase(), it only retains entries
  corresponding to the listed keys.

  For example,
      HashTable<someType> largeCache;
      wordHashSet preserve = ...;

      largeCache.retain(preserve);

    being roughly equivalent to the following two-stage process,
    but with reduced overhead and typing, and fewer potential mistakes.

      HashTable<someType> largeCache;
      wordHashSet preserve = ...;

      {
          wordHashSet cull(largeCache.toc()); // all keys
          cull.erase(preserve);               // except those to preserve
          largeCache.erase(cull);             //
      }

  The HashSet &= operator and retain() are functionally equivalent,
  but retain() also works with dissimilar value types.
2017-05-11 12:25:35 +02:00
03d180724b ENH: improve HashTable iterator access and management
- provide key_iterator/const_key_iterator for all hashes,
  reuse directly for HashSet as iterator/const_iterator, respectively.

- additional keys() method for HashTable that returns a wrapped to
  a pair of begin/end const_iterators with additional size/empty
  information that allows these to be used directly by anything else
  expecting things with begin/end/size. Unfortunately does not yet
  work with std::distance().

  Example,
     for (auto& k : labelHashTable.keys())
     {
        ...
     }
2017-05-04 10:17:18 +02:00
e105e30bfb STYLE: add edge(labelPair) constructor, debug info etc. 2017-05-04 02:42:50 +02:00
f8c58bdd5c ENH: HashSet iterators operator* now return Key.
- much more useful than returning nil. Can now use with a for range:

    for (auto i : myLabelHashSet)
    {
        ...
    }
2017-05-02 01:58:38 +02:00
8f75bfbed5 ENH: add HashTable::writeKeys and HashSet::writeList
- can use the hash-set writeList in combination with FlatOutput:

  Eg, flatOutput(myHashSet);
2017-05-02 00:51:04 +02:00
c0a50dc621 ENH: improve overall consistency of the HashTable and its iterators
- previously had a mismash of const/non-const attributes on iterators
  that were confused with the attributes of the object being accessed.

- use the iterator keys() and object() methods consistently for all
  internal access of the HashTable iterators. This makes the intention
  clearer, the code easier to maintain, and protects against any
  possible changes in the definition of the operators.

- 'operator*': The standard form expected by STL libraries.
  However, for the std::map, this dereferences to a <key,value> pair,
  whereas OpenFOAM dereferences simply to <value>.

- 'operator()': OpenFOAM treats this like the 'operator*'

- adjusted the values of end() and cend() to reinterpret from nullObject
  instead of returning a static iteratorEnd() object.
  This means that C++ templates can now correctly deduce and match
  the return types from begin() and end() consistently.
  So that range-based now works.

  Eg,
      HashTable<label> table1 = ...;
      for (auto i : table1)
      {
          Info<< i << endl;
      }

  Since the 'operator*' returns hash table values, this prints all the
  values in the table.
2017-05-02 00:15:12 +02:00
0298c02b2d ENH: ensure nullObject is large enough for reinterpret
- previously occupied 1 byte. Now occupies enough to hold a pointer,
  which helps if using reinterpret_cast to something that has some
  member content.
2017-05-01 22:39:36 +02:00
805b76d4b9 ENH: support UList[labelRange] and SubList construction with labelRange
This uses a concept similar to what std::valarray and std::slice do.
A labelRange provides a convenient container for holding start/size
and lends itself to addressing 'sliced' views of lists.
For safety, the operations and constructors restricts the given input range
to a valid addressible region of the underlying list, while the labelRange
itself precludes negative sizes.

The SubList version is useful for patches or other things that have a
SubList as its parameter. Otherwise the UList [] operator will be the
more natural solution. The slices can be done with a labelRange, or
a {start,size} pair.

Examples,
     labelList list1 = identity(20);

     list1[labelRange(18,10)]  = -1;
     list1[{-20,25}] = -2;
     list1[{1000,5}] = -3;

     const labelList list2 = identity(20);
     list2[{5,10}] = -3;  // ERROR: cannot assign to const!
2017-05-01 14:01:09 +02:00
75ef6f4e50 ENH: add labelRange comparison operators and subset methods
- improve interface consistency.
2017-04-30 21:29:24 +02:00
7b427c382e ENH: add Tuple2 comparison operators, typedefs 2017-04-30 13:05:49 +02:00
c65e2e580d ENH: add some standard templates and macros into stdFoam.H
- some functionality similar to what the standary library <iterator>
  provides.

  * stdFoam::begin() and stdFoam::end() do type deduction,
    which means that many cases it is possible to manage these types
    of changes.

    For example, when managing a number of indices:
       Map<labelHashSet> lookup;

    1) Longhand:

        for
        (
            Map<labelHashSet>::const_iterator iter = lookup.begin();
            iter != lookup.end();
            ++iter
        )
        { .... }

    1b) The same, but wrapped via a macro:

        forAllConstIter(Map<labelHashSet>, lookup, iter)
        { .... }

    2) Using stdFoam begin/end templates directly

        for
        (
            auto iter = stdFoam::begin(lookup);
            iter != stdFoam::end(lookup);
            ++iter
        )
        { .... }

    2b) The same, but wrapped via a macro:

        forAllConstIters(lookup, iter)
        { .... }

Note that in many cases it is possible to simply use a range-based for.
Eg,
     labelList myList;

     for (auto val : myList)
     { ... }

     for (const auto& val : myList)
     { ... }

These however will not work with any of the OpenFOAM hash-tables,
since the standard C++ concept of an iterator would return a key,value
pair when deferencing the *iter.

The deduction methods also exhibits some slightly odd behaviour with
some PtrLists (needs some more investigation).
2017-04-29 22:28:16 +02:00
6a5ea9a2bf ENH: improve HashSet construction and assignment
- make construct from UList explicit and provide corresponding
  assignment operator.

- add construct,insert,set,assignment from FixedList.
  This is convenient when dealing with things like edges or triFaces.
2017-04-29 15:19:47 +02:00
ded105c539 STYLE: HashTable documentation
- explicitly mention the value-initialized status for the operator().
  This means that the following code will properly use an initialized
  zero.

      HashTable<label> regionCount;

      if (...)
         regionCount("region1")++;

      ... and also this;

      if (regionCount("something") > 0)
      {
          ...
      }

  Note that the OpenFOAM HashTable uses operator[] to provide read and
  write access to *existing* entries and will provoke a FatalError if
  the entry does not exist.

  The operator() provides write access to *existing* entries or will
  create the new entry as required.
  The STL hashes use operator[] for this purpose.
2017-04-29 12:27:11 +02:00
1d9b311b82 ENH: further refinement to edge methods
- more hash-like methods.
  Eg, insert/erase via lists, clear(), empty(),...

- minVertex(), maxVertex() to return the smallest/largest label used

- improved documentation, more clarification about where/how negative
  point labels are treated.
2017-04-29 12:14:46 +02:00
c9df5f9249 Merge branch 'dict-lookup' into 'develop'
Dict lookup

See merge request !105
2017-05-02 16:37:57 +01:00
1a24be6e54 Merge branch 'feature-random-numbers' into 'develop'
Updated random numbers

See merge request !107
2017-04-28 10:11:18 +01:00
7f0cc0045d ENH: Random numbers - updated dependent code from change cachedRandom->Random class 2017-04-28 09:15:52 +01:00
5514471c15 BUG: FixedList '<' operator using a template parameter (fixes #458)
- cannot use comparison of list sizes. Okay for UList, but not here.

STYLE:
- don't need two iterators for the '<' comparison, can just access
  internal storage directly
2017-04-27 01:30:50 +02:00
ffe3e0e425 ENH: allow '^' as anchor for dictionary scoping (issue #429)
- The existing ':' anchor works for rvalue substitutions
  (Eg, ${:subdict.name}), but fails for lvalues, since it is
  a punctuation token and parse stops there.
2017-04-25 11:57:21 +02:00
f2304f7c0b ENH: various enhancements for edge.
- support edge-ordering on construction, and additional methods:
  - sort(), sorted(), unitVec(), collapse()

- null constructor initializes with -1, for consistency with face,
  triFace and since it is generally much more useful that way.

- add some methods that allow edges to used somewhat more like hashes.
  - count(), found(), insert(), erase()

  Here is possible way to use that:

      edge someEdge;  // initializes with '-1' for both entries

      if (someEdge.insert(pt1))
      {
         // added a new point label
      }

      ... later

      // unmark point on edge
      someEdge.erase(pt2);

--

STYLE:

- use UList<point> instead of pointField for edge methods for flexibility.

  The pointField include is retained, however, since many other routines
  may be relying on it being included via edge.H
2017-04-23 19:25:35 +02:00
c085c5df25 Merged the edgeMesh library into the meshTools library 2017-04-21 10:38:53 +01:00
f2e3c1c422 ENH: provide HashTable::iterator::found() method
- This can be used as a convenient alternative to comparing against end().
  Eg,

    dictionaryConstructorTable::iterator cstrIter =
        dictionaryConstructorTablePtr_->find(methodType);

    if (cstrIter.found())
    {
        ...
    }
  vs.
    if (cstrIter != dictionaryConstructorTablePtr_->end())
    {
        ...
    }
2017-04-11 09:55:54 +02:00
5d15a13247 STYLE: use FOAM_UTILITIES in Make/options
- consistent with use of FOAM_SOLVERS, and reduces reliance on the FOAM_APP
  env variable
2017-04-07 08:17:43 +02:00
96fd3c9367 STYLE: consistent use of LIB_SRC in Make/options
- had occasional remnant use of FOAM_SRC
2017-04-06 23:56:23 +02:00
fb724ce113 MRG: Integrated Foundation code to commit 9f37c3c 2017-03-31 15:34:28 +01:00
836d04ffc1 ENH: various general improvments to the POSIX functions
- ensure proper and sensible handling of empty names.
  Eg, isDir(""), isFile("") are no-ops, and avoid file-stat

- rmDir:
  * optional 'silent' option to suppress messages.
  * removes all possible sub-entries, instead of just giving up on
    the first problem encountered.

- reduced code duplication in etcFiles

ENH: provide WM_USER_RESOURCE_DIRNAME define (in foamVersion.H)

- this is still a hard-coded value, but at least centrally available
2017-03-30 11:45:25 +02:00
45381b1085 MRG: Integrated Foundation code to commit 19e602b 2017-03-28 11:30:10 +01:00
dcb1a95e35 MRG: Integrated Foundation code to commit 7d6845d 2017-03-23 14:33:33 +00:00
436ec1cf1f MRG: Integrated Foundation code to commit ba4dbed 2017-03-23 12:11:49 +00:00
04c3d535b0 MRG: Integrated Foundation code to commit 47bd8e1 2017-03-23 10:12:38 +00:00
0be6269add Added robust primitive cubic/quadratic/linear equation solutions.
Applied to eigen-value calculations. Fixed repeated-eigen-value issues
in eigen-vector generation.
2017-03-22 15:11:54 +00:00
96ad725a0b Updated UPstream::commsTypes to use the C++11 enum class 2017-03-10 19:54:55 +00:00
f05be160e2 BUG: dictionary entries not being properly merged/overwritten (closes #418)
STYLE: update dictionary documentation
2017-03-03 11:36:24 +01:00
9077098935 ENH: provide string removeStart, removeEnd convenience methods 2017-03-10 11:39:40 +01:00
31555346cc Merge remote-tracking branch 'origin/master' into develop 2017-03-10 13:30:39 +01:00
215349aa69 BUG: in wordRe::operator=(const keyType&)
- the regex was not being unset on assignment.
- drop unused recompile() method as being dubious
2017-03-10 13:05:35 +01:00
3d3c14cbff ENH: add inplaceUniqueSort function
- determines a unique sort order (as per uniqueOrder) and uses that to
  reorder the list and possibly truncate it.
2017-03-08 11:10:16 +01:00
b7dc6d0441 ENH: add subsetList/inplaceSubsetList functions with unary predicate
- these are suitable for use with lambda functions.

- Deprecate the unused 3-parameter version of subset/inplaceSubset.

- Deprecate initList and initListList in favour of initializer_list

STYLE: adjust some comments, remove dead code in regionSizeDistribution.C
2017-03-07 17:00:30 +01:00
d2be645483 thermophysicalProperties: New base-class for liquidProperties and in the future gasProperties
Description
    Base-class for thermophysical properties of solids, liquids and gases
    providing an interface compatible with the templated thermodynamics
    packages.

liquidProperties, solidProperties and thermophysicalFunction libraries have been
combined with the new thermophysicalProperties class into a single
thermophysicalProperties library to simplify compilation and linkage of models,
libraries and applications dependent on these classes.
2017-02-18 21:53:20 +00:00
c52e4b58a1 thermophysicalModels: Changed specie thermodynamics from mole to mass basis
The fundamental properties provided by the specie class hierarchy were
mole-based, i.e. provide the properties per mole whereas the fundamental
properties provided by the liquidProperties and solidProperties classes are
mass-based, i.e. per unit mass.  This inconsistency made it impossible to
instantiate the thermodynamics packages (rhoThermo, psiThermo) used by the FV
transport solvers on liquidProperties.  In order to combine VoF with film and/or
Lagrangian models it is essential that the physical propertied of the three
representations of the liquid are consistent which means that it is necessary to
instantiate the thermodynamics packages on liquidProperties.  This requires
either liquidProperties to be rewritten mole-based or the specie classes to be
rewritten mass-based.  Given that most of OpenFOAM solvers operate
mass-based (solve for mass-fractions and provide mass-fractions to sub-models it
is more consistent and efficient if the low-level thermodynamics is also
mass-based.

This commit includes all of the changes necessary for all of the thermodynamics
in OpenFOAM to operate mass-based and supports the instantiation of
thermodynamics packages on liquidProperties.

Note that most users, developers and contributors to OpenFOAM will not notice
any difference in the operation of the code except that the confusing

    nMoles     1;

entries in the thermophysicalProperties files are no longer needed or used and
have been removed in this commet.  The only substantial change to the internals
is that species thermodynamics are now "mixed" with mass rather than mole
fractions.  This is more convenient except for defining reaction equilibrium
thermodynamics for which the molar rather than mass composition is usually know.
The consequence of this can be seen in the adiabaticFlameT, equilibriumCO and
equilibriumFlameT utilities in which the species thermodynamics are
pre-multiplied by their molecular mass to effectively convert them to mole-basis
to simplify the definition of the reaction equilibrium thermodynamics, e.g. in
equilibriumCO

    // Reactants (mole-based)
    thermo FUEL(thermoData.subDict(fuelName)); FUEL *= FUEL.W();

    // Oxidant (mole-based)
    thermo O2(thermoData.subDict("O2")); O2 *= O2.W();
    thermo N2(thermoData.subDict("N2")); N2 *= N2.W();

    // Intermediates (mole-based)
    thermo H2(thermoData.subDict("H2")); H2 *= H2.W();

    // Products (mole-based)
    thermo CO2(thermoData.subDict("CO2")); CO2 *= CO2.W();
    thermo H2O(thermoData.subDict("H2O")); H2O *= H2O.W();
    thermo CO(thermoData.subDict("CO")); CO *= CO.W();

    // Product dissociation reactions

    thermo CO2BreakUp
    (
        CO2 == CO + 0.5*O2
    );

    thermo H2OBreakUp
    (
        H2O == H2 + 0.5*O2
    );

Please report any problems with this substantial but necessary rewrite of the
thermodynamic at https://bugs.openfoam.org

Henry G. Weller
CFD Direct Ltd.
2017-02-17 11:22:14 +00:00
e3d9084c62 ENH: support ASCII List output on a single-line
- Introduce writeList(Ostream&, label) method in various List classes to
  provide more flexibility and avoid hard-coded limits when deciding if a
  list is too long and should be broken up into multiple lines (ASCII only).

- The old hard-code limit (10) is retained in the operator<< versions

- This functionality is wrapped in the FlatOutput output adapter class
  and directly accessible via the 'flatOutput()' function.

Eg,
    #include "ListOps.H"
    Info<< "methods: " << flatOutput(myLongList) << endl;

    // OR

    Info<< "methods: ";
    myLongList.writeList(os) << endl;
2017-02-10 09:55:37 +01:00
9f91084eef ENH: provide word::validated() static method
- Constructs a validated word, in which all invalid characters have
  been stripped out and any leading digit is '_'-prefixed.
  Words with leading digits cause parse issues when read back later.

- Replaces previous functionally identical code from src/conversion

--
COMP: test against nullObject instead of checking address for null pointer.
2017-02-03 15:13:13 +00:00
722d23f59c ENH: additional methods/operators for boundBox (related to #196)
- Constructor for bounding box of a single point.

- add(boundBox), add(point) ...
  -> Extend box to enclose the second box or point(s).

  Eg,
      bb.add(pt);
  vs.
      bb.min() = Foam::min(bb.min(), pt);
      bb.max() = Foam::max(bb.max(), pt);

Also works with other bounding boxes.
  Eg,
      bb.add(bb2);
      // OR
      bb += bb2;
  vs.
      bb.min() = Foam::min(bb.min(), bb2.min());
      bb.max() = Foam::max(bb.max(), bb2.max());

'+=' operator allows the reduction to be used in parallel
gather/scatter operations.

A global '+' operator is not currently needed.

Note: may be useful in the future to have a 'clear()' method
that resets to a zero-sized (inverted) box.

STYLE: make many bounding box constructors explicit
2017-01-25 19:26:50 +01:00