Commit Graph

8234 Commits

Author SHA1 Message Date
71fce2e413 move enum{SINGLE,MULTI} and enum{MULTIPLE} to Comm in comm.h 2018-05-09 23:57:24 -04:00
994fd2af0e move enum{NSQ,BIN,MULTI} to the Neighbor class in neighbor.h 2018-05-09 23:46:09 -04:00
d8138a5b4c move enum{IGNORE,WARN,ERROR) into Thermo class and use Thermo:: namespace to reference it 2018-05-09 18:11:31 -04:00
a7a83b118d update dependencies for USER-CGSDK package. make script permissions consistent 2018-05-09 16:13:54 -04:00
8697cac6aa make QEQ package depend on MANYBODY
the qeq/fire style depends on pair style comb,
thus QEQ needs and explicit Install.sh file and
it has to depend on MANYBODY
2018-05-09 16:06:37 -04:00
793260f227 consistency tweak to package LATTE Install.sh file 2018-05-09 11:47:57 -06:00
e5a589e05a Merge pull request #898 from robeme/fix_restrain_individual_energies
Output individual energies in fix restrain
2018-05-09 11:43:52 -06:00
dc8e141501 Merge pull request #896 from akohlmey/cplusplus-compliance-lib
C++ style header includes and C++ standard conforming code changes in lib folder
2018-05-09 11:43:03 -06:00
9f03a6798f Merge pull request #880 from stanmoore1/kk_dep
Remove Kokkos deprecated code
2018-05-09 11:41:25 -06:00
b4e5828a60 Update fix_restrain.cpp 2018-05-08 15:36:32 -04:00
8705ea9fc5 replace pointless use of strncat() emulating strcat() with plain strcat() 2018-05-08 08:49:05 -04:00
16697fc4cb forgot to reduce energies 2018-05-08 10:46:41 +02:00
6960529594 set appropriate flags for computing a vector in constructor of fix restrain 2018-05-08 10:02:10 +02:00
c9817b0db9 update src/.gitignore 2018-05-08 00:33:27 -04:00
cde6e9b7c4 Fix CUDA issue in pair_exp6_rx_kokkos 2018-05-07 15:51:15 -06:00
bfdfd36c1c Merge pull request #894 from akohlmey/cplusplus-clang-fixes
More fixes to conform with C++ standards as indicated by Clang
2018-05-07 14:53:43 -06:00
a4759210a8 Merge pull request #893 from ohenrich/user-cgdna
Docs update and journal reference for USER-CGDNA package
2018-05-07 14:39:32 -06:00
7fed6c7e4c Merge pull request #634 from craabreu/master
Computation of forces/torques on rigid bodies moved to post_force
2018-05-07 14:39:10 -06:00
82217001c8 must use fabs() on doubles, not abs(), to avoid ambiguity 2018-05-07 15:56:35 -04:00
b2370b6986 use correct namespace when instantiating IntelBuffers; 2018-05-07 15:49:51 -04:00
624173d25a Merge branch 'master' into kk_dep 2018-05-07 13:42:33 -06:00
74fbb84b8c Merge pull request #878 from jrgissing/group_extract
Group extract
2018-05-07 11:45:37 -06:00
fcdcdb3286 Merge branch 'master' into user-cgdna 2018-05-07 18:19:24 +01:00
722549965e Added reference to implementation paper 2018-05-07 18:13:18 +01:00
ca96a7ab05 Merge pull request #891 from akohlmey/collected-small-changes
Collected small changes, fixes and updates
2018-05-07 10:43:19 -06:00
8ec033e823 Merge pull request #889 from akohlmey/cplusplus-compliance
Collected changes to restore C++ standard compliance
2018-05-07 10:42:22 -06:00
a7c9418629 Merge pull request #890 from jrgissing/bond_react_final_touches
bond/react final touches
2018-05-07 10:37:47 -06:00
bc0c405bfa Merge pull request #887 from akohlmey/create-bonds-single-bugfix
Fix bug in create_bonds single/bond
2018-05-07 10:37:00 -06:00
d9d33ac766 add ability to set multiplicity for dihedrals with fix restrain
this introduces an optional keyword, so backward compatibility is preserved.
this closes #884
2018-05-07 07:23:29 -04:00
d51745fd27 whitespace cleanup 2018-05-07 07:23:29 -04:00
c3588f08b7 provide keyword/value option to compute ackland/atom for selecting legacy or current variant of implementation 2018-05-07 07:23:29 -04:00
ecfe5c8373 use american spelling of neighbor consistently in docs and code comments 2018-05-07 07:23:29 -04:00
009666d9a5 need to ignore pair style kim in src/ 2018-05-07 07:23:29 -04:00
934f825388 update USER-INTEL Install.sh script and dependency handling 2018-05-07 07:23:29 -04:00
14588f6242 remove dead code and fix compilation for fix mscg 2018-05-07 07:23:29 -04:00
941d289a69 cosmetic changes to avoid compiler warnings 2018-05-06 10:54:34 -04:00
e1f9ee1347 fix1 2018-05-06 01:04:23 -06:00
916ed71760 fix bond/react final touches 2018-05-06 00:34:03 -06:00
9d6891823a some more cosmetic changes 2018-05-05 20:38:22 -04:00
e14b61e4a4 replace variable length array with constant length through making maxLine constant 2018-05-05 19:51:30 -04:00
9acd35abe2 another change to fix poems 2018-05-05 10:52:39 -06:00
0c53afbfcf more changes to fix rigid and fix poems 2018-05-05 10:39:01 -06:00
f7c37a7a98 adapt isfinite() handling to upstream 2018-05-05 11:46:35 -04:00
095ca76b5b plug memory leaks in USER-BOCS 2018-05-05 11:44:21 -04:00
735bceb468 Merge branch 'master' into USER-BOCS 2018-05-05 10:21:21 -04:00
81293b0fda changes to integrate USER-BOCS into LAMMPS and to closer follow the LAMMPS programming/documentation style 2018-05-05 10:21:11 -04:00
ce86ff6cd1 add missing USER-MOFFF to Makefile and fix typo 2018-05-05 02:15:36 -04:00
36126ccb7d be more verbose in USER-PHONON install script when KSPACE is not installed 2018-05-05 02:14:17 -04:00
b7210e931c more cosmetic changes to silence pedantic warnings 2018-05-04 22:34:20 -04:00
53342a5cec address a few cosmetic issues flagged by -Wpedantic 2018-05-04 22:17:25 -04:00