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71fce2e41310fb5d32d8aae29a56bf46ff480706
lammps/src
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Axel Kohlmeyer 71fce2e413 move enum{SINGLE,MULTI} and enum{MULTIPLE} to Comm in comm.h
2018-05-09 23:57:24 -04:00
..
ASPHERE
replace C-style include files with their C++ equivalents
2018-04-27 18:00:24 -04:00
BODY
replace C-style include files with their C++ equivalents
2018-04-27 18:00:24 -04:00
CLASS2
replace C-style include files with their C++ equivalents
2018-04-27 18:00:24 -04:00
COLLOID
replace C-style include files with their C++ equivalents
2018-04-27 18:00:24 -04:00
COMPRESS
update dependencies for USER-CGSDK package. make script permissions consistent
2018-05-09 16:13:54 -04:00
CORESHELL
update dependencies for USER-CGSDK package. make script permissions consistent
2018-05-09 16:13:54 -04:00
DEPEND
Fix more typos in src files
2017-03-07 00:55:01 -05:00
DIPOLE
replace C-style include files with their C++ equivalents
2018-04-27 18:00:24 -04:00
GPU
update dependencies for USER-CGSDK package. make script permissions consistent
2018-05-09 16:13:54 -04:00
GRANULAR
replace C-style include files with their C++ equivalents
2018-04-27 18:00:24 -04:00
KIM
update dependencies for USER-CGSDK package. make script permissions consistent
2018-05-09 16:13:54 -04:00
KOKKOS
move enum{SINGLE,MULTI} and enum{MULTIPLE} to Comm in comm.h
2018-05-09 23:57:24 -04:00
KSPACE
replace variable length array in msm with new/delete
2018-05-04 18:09:25 -04:00
LATTE
update dependencies for USER-CGSDK package. make script permissions consistent
2018-05-09 16:13:54 -04:00
MAKE
Tweak whitespace in Makefile.kokkos_cuda_mpi
2018-04-05 11:49:57 -06:00
MANYBODY
avoiding variable length array in pair style comb3 by declaring MAXLIB const
2018-05-04 21:48:44 -04:00
MC
replace variable length arrays in fix gcmc with new/delete
2018-05-04 18:48:43 -04:00
MEAM
update dependencies for USER-CGSDK package. make script permissions consistent
2018-05-09 16:13:54 -04:00
MISC
replace C-style include files with their C++ equivalents
2018-04-27 18:00:24 -04:00
MOLECULE
Merge pull request #875 from akohlmey/collected-small-fixes
2018-05-03 11:28:00 -06:00
MPIIO
update dependencies for USER-CGSDK package. make script permissions consistent
2018-05-09 16:13:54 -04:00
MSCG
remove dead code and fix compilation for fix mscg
2018-05-07 07:23:29 -04:00
OPT
update dependencies for USER-CGSDK package. make script permissions consistent
2018-05-09 16:13:54 -04:00
PERI
replace C-style include files with their C++ equivalents
2018-04-27 18:00:24 -04:00
POEMS
update dependencies for USER-CGSDK package. make script permissions consistent
2018-05-09 16:13:54 -04:00
PYTHON
cast implicit string objects to char * for C++ standard compliance
2018-05-04 21:13:02 -04:00
QEQ
update dependencies for USER-CGSDK package. make script permissions consistent
2018-05-09 16:13:54 -04:00
REAX
update dependencies for USER-CGSDK package. make script permissions consistent
2018-05-09 16:13:54 -04:00
REPLICA
more cosmetic changes to silence pedantic warnings
2018-05-04 22:34:20 -04:00
RIGID
Merge pull request #634 from craabreu/master
2018-05-07 14:39:10 -06:00
SHOCK
replace C-style include files with their C++ equivalents
2018-04-27 18:00:24 -04:00
SNAP
Merge pull request #881 from akohlmey/cplus-plus-style-includes
2018-05-03 11:25:51 -06:00
SRD
replace C-style include files with their C++ equivalents
2018-04-27 18:00:24 -04:00
STUBS
add support for MPI_Request_free() to MPI STUBS library
2017-03-17 11:40:09 -04:00
USER-ATC
replace C-style include files with their C++ equivalents
2018-04-27 18:00:24 -04:00
USER-AWPMD
update dependencies for USER-CGSDK package. make script permissions consistent
2018-05-09 16:13:54 -04:00
USER-BOCS
adapt isfinite() handling to upstream
2018-05-05 11:46:35 -04:00
USER-CGDNA
update dependencies for USER-CGSDK package. make script permissions consistent
2018-05-09 16:13:54 -04:00
USER-CGSDK
update dependencies for USER-CGSDK package. make script permissions consistent
2018-05-09 16:13:54 -04:00
USER-COLVARS
Merge pull request #881 from akohlmey/cplus-plus-style-includes
2018-05-03 11:25:51 -06:00
USER-DIFFRACTION
replace C-style include files with their C++ equivalents
2018-04-27 18:00:24 -04:00
USER-DPD
replace pointless use of strncat() emulating strcat() with plain strcat()
2018-05-08 08:49:05 -04:00
USER-DRUDE
address a few cosmetic issues flagged by -Wpedantic
2018-05-04 22:17:25 -04:00
USER-EFF
replace C-style include files with their C++ equivalents
2018-04-27 18:00:24 -04:00
USER-FEP
update dependencies for USER-CGSDK package. make script permissions consistent
2018-05-09 16:13:54 -04:00
USER-H5MD
update dependencies for USER-CGSDK package. make script permissions consistent
2018-05-09 16:13:54 -04:00
USER-INTEL
move enum{NSQ,BIN,MULTI} to the Neighbor class in neighbor.h
2018-05-09 23:46:09 -04:00
USER-LB
replace variable length array in fix lb/momentum with fixed size array
2018-05-04 19:00:43 -04:00
USER-MANIFOLD
replace C-style include files with their C++ equivalents
2018-04-27 18:00:24 -04:00
USER-MEAMC
some more cosmetic changes
2018-05-05 20:38:22 -04:00
USER-MESO
must use fabs() on doubles, not abs(), to avoid ambiguity
2018-05-07 15:56:35 -04:00
USER-MGPT
new SNAP potential for W
2017-02-21 15:49:21 -07:00
USER-MISC
update dependencies for USER-CGSDK package. make script permissions consistent
2018-05-09 16:13:54 -04:00
USER-MOFFF
replace C-style include files with their C++ equivalents
2018-04-27 18:00:24 -04:00
USER-MOLFILE
update dependencies for USER-CGSDK package. make script permissions consistent
2018-05-09 16:13:54 -04:00
USER-NETCDF
update dependencies for USER-CGSDK package. make script permissions consistent
2018-05-09 16:13:54 -04:00
USER-OMP
update dependencies for USER-CGSDK package. make script permissions consistent
2018-05-09 16:13:54 -04:00
USER-PHONON
update dependencies for USER-CGSDK package. make script permissions consistent
2018-05-09 16:13:54 -04:00
USER-QMMM
replace C-style include files with their C++ equivalents
2018-04-27 18:00:24 -04:00
USER-QTB
replace C-style include files with their C++ equivalents
2018-04-27 18:00:24 -04:00
USER-QUIP
update dependencies for USER-CGSDK package. make script permissions consistent
2018-05-09 16:13:54 -04:00
USER-REAXC
replace C-style include files with their C++ equivalents
2018-04-27 18:00:24 -04:00
USER-SMD
update dependencies for USER-CGSDK package. make script permissions consistent
2018-05-09 16:13:54 -04:00
USER-SMTBQ
replace C-style include files with their C++ equivalents
2018-04-27 18:00:24 -04:00
USER-SPH
replace C-style include files with their C++ equivalents
2018-04-27 18:00:24 -04:00
USER-TALLY
replace C-style include files with their C++ equivalents
2018-04-27 18:00:24 -04:00
USER-UEF
address a few cosmetic issues flagged by -Wpedantic
2018-05-04 22:17:25 -04:00
USER-VTK
update dependencies for USER-CGSDK package. make script permissions consistent
2018-05-09 16:13:54 -04:00
VORONOI
replace C-style include files with their C++ equivalents
2018-04-27 18:00:24 -04:00
.gitignore
update src/.gitignore
2018-05-08 00:33:27 -04:00
accelerator_kokkos.h
Fix compiler warnings
2018-03-14 13:27:03 -06:00
accelerator_omp.h
…
angle_hybrid.cpp
replace C-style include files with their C++ equivalents
2018-04-27 18:00:24 -04:00
angle_hybrid.h
replace C-style include files with their C++ equivalents
2018-04-27 18:00:24 -04:00
angle_zero.cpp
replace C-style include files with their C++ equivalents
2018-04-27 18:00:24 -04:00
angle_zero.h
replace C-style include files with their C++ equivalents
2018-04-27 18:00:24 -04:00
angle.cpp
replace C-style include files with their C++ equivalents
2018-04-27 18:00:24 -04:00
angle.h
replace C-style include files with their C++ equivalents
2018-04-27 18:00:24 -04:00
atom_map.cpp
replace C-style include files with their C++ equivalents
2018-04-27 18:00:24 -04:00
atom_map.h
add placeholders to include files for error messges
2018-04-03 17:48:31 -06:00
atom_masks.h
…
atom_vec_atomic.cpp
replace C-style include files with their C++ equivalents
2018-04-27 18:00:24 -04:00
atom_vec_atomic.h
…
atom_vec_body.cpp
replace C-style include files with their C++ equivalents
2018-04-27 18:00:24 -04:00
atom_vec_body.h
whitespace cleanup
2018-03-15 21:57:45 -04:00
atom_vec_charge.cpp
replace C-style include files with their C++ equivalents
2018-04-27 18:00:24 -04:00
atom_vec_charge.h
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atom_vec_ellipsoid.cpp
replace C-style include files with their C++ equivalents
2018-04-27 18:00:24 -04:00
atom_vec_ellipsoid.h
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atom_vec_hybrid.cpp
replace C-style include files with their C++ equivalents
2018-04-27 18:00:24 -04:00
atom_vec_hybrid.h
replace C-style include files with their C++ equivalents
2018-04-27 18:00:24 -04:00
atom_vec_line.cpp
replace C-style include files with their C++ equivalents
2018-04-27 18:00:24 -04:00
atom_vec_line.h
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atom_vec_sphere.cpp
replace C-style include files with their C++ equivalents
2018-04-27 18:00:24 -04:00
atom_vec_sphere.h
…
atom_vec_tri.cpp
replace C-style include files with their C++ equivalents
2018-04-27 18:00:24 -04:00
atom_vec_tri.h
Fix typos in src files
2017-03-05 21:03:40 -05:00
atom_vec.cpp
replace C-style include files with their C++ equivalents
2018-04-27 18:00:24 -04:00
atom_vec.h
replace C-style include files with their C++ equivalents
2018-04-27 18:00:24 -04:00
atom.cpp
replace C-style include files with their C++ equivalents
2018-04-27 18:00:24 -04:00
atom.h
add placeholders to include files for error messges
2018-04-03 17:48:31 -06:00
balance.cpp
replace C-style include files with their C++ equivalents
2018-04-27 18:00:24 -04:00
balance.h
replace C-style include files with their C++ equivalents
2018-04-27 18:00:24 -04:00
body.cpp
replace C-style include files with their C++ equivalents
2018-04-27 18:00:24 -04:00
body.h
…
bond_hybrid.cpp
replace C-style include files with their C++ equivalents
2018-04-27 18:00:24 -04:00
bond_hybrid.h
replace C-style include files with their C++ equivalents
2018-04-27 18:00:24 -04:00
bond_zero.cpp
replace C-style include files with their C++ equivalents
2018-04-27 18:00:24 -04:00
bond_zero.h
replace C-style include files with their C++ equivalents
2018-04-27 18:00:24 -04:00
bond.cpp
replace C-style include files with their C++ equivalents
2018-04-27 18:00:24 -04:00
bond.h
replace C-style include files with their C++ equivalents
2018-04-27 18:00:24 -04:00
change_box.cpp
replace C-style include files with their C++ equivalents
2018-04-27 18:00:24 -04:00
change_box.h
add placeholders to include files for error messges
2018-04-03 17:48:31 -06:00
citeme.cpp
…
citeme.h
replace C-style include files with their C++ equivalents
2018-04-27 18:00:24 -04:00
comm_brick.cpp
move enum{SINGLE,MULTI} and enum{MULTIPLE} to Comm in comm.h
2018-05-09 23:57:24 -04:00
comm_brick.h
…
comm_tiled.cpp
move enum{SINGLE,MULTI} and enum{MULTIPLE} to Comm in comm.h
2018-05-09 23:57:24 -04:00
comm_tiled.h
add placeholders to include files for error messges
2018-04-03 17:48:31 -06:00
comm.cpp
move enum{SINGLE,MULTI} and enum{MULTIPLE} to Comm in comm.h
2018-05-09 23:57:24 -04:00
comm.h
move enum{SINGLE,MULTI} and enum{MULTIPLE} to Comm in comm.h
2018-05-09 23:57:24 -04:00
compute_aggregate_atom.cpp
replace C-style include files with their C++ equivalents
2018-04-27 18:00:24 -04:00
compute_aggregate_atom.h
add placeholders to include files for error messges
2018-04-03 17:48:31 -06:00
compute_angle_local.cpp
replace C-style include files with their C++ equivalents
2018-04-27 18:00:24 -04:00
compute_angle_local.h
…
compute_angle.cpp
replace C-style include files with their C++ equivalents
2018-04-27 18:00:24 -04:00
compute_angle.h
add placeholders to include files for error messges
2018-04-03 17:48:31 -06:00
compute_angmom_chunk.cpp
replace C-style include files with their C++ equivalents
2018-04-27 18:00:24 -04:00
compute_angmom_chunk.h
…
compute_bond_local.cpp
replace C-style include files with their C++ equivalents
2018-04-27 18:00:24 -04:00
compute_bond_local.h
add placeholders to include files for error messges
2018-04-03 17:48:31 -06:00
compute_bond.cpp
replace C-style include files with their C++ equivalents
2018-04-27 18:00:24 -04:00
compute_bond.h
add placeholders to include files for error messges
2018-04-03 17:48:31 -06:00
compute_centro_atom.cpp
replace C-style include files with their C++ equivalents
2018-04-27 18:00:24 -04:00
compute_centro_atom.h
add placeholders to include files for error messges
2018-04-03 17:48:31 -06:00
compute_chunk_atom.cpp
replace C-style include files with their C++ equivalents
2018-04-27 18:00:24 -04:00
compute_chunk_atom.h
add placeholders to include files for error messges
2018-04-03 17:48:31 -06:00
compute_cluster_atom.cpp
replace C-style include files with their C++ equivalents
2018-04-27 18:00:24 -04:00
compute_cluster_atom.h
add new compute fragment/atom
2017-08-18 19:07:32 -04:00
compute_cna_atom.cpp
replace C-style include files with their C++ equivalents
2018-04-27 18:00:24 -04:00
compute_cna_atom.h
Fix typos in src files
2017-03-05 21:03:40 -05:00
compute_com_chunk.cpp
replace C-style include files with their C++ equivalents
2018-04-27 18:00:24 -04:00
compute_com_chunk.h
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compute_com.cpp
…
compute_com.h
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compute_contact_atom.cpp
replace C-style include files with their C++ equivalents
2018-04-27 18:00:24 -04:00
compute_contact_atom.h
Fix typos in src files
2017-03-05 21:03:40 -05:00
compute_coord_atom.cpp
replace C-style include files with their C++ equivalents
2018-04-27 18:00:24 -04:00
compute_coord_atom.h
add placeholders to include files for error messges
2018-04-03 17:48:31 -06:00
compute_dihedral_local.cpp
replace C-style include files with their C++ equivalents
2018-04-27 18:00:24 -04:00
compute_dihedral_local.h
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compute_dihedral.cpp
replace C-style include files with their C++ equivalents
2018-04-27 18:00:24 -04:00
compute_dihedral.h
add placeholders to include files for error messges
2018-04-03 17:48:31 -06:00
compute_dipole_chunk.cpp
replace C-style include files with their C++ equivalents
2018-04-27 18:00:24 -04:00
compute_dipole_chunk.h
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compute_displace_atom.cpp
replace C-style include files with their C++ equivalents
2018-04-27 18:00:24 -04:00
compute_displace_atom.h
add placeholders to include files for error messges
2018-04-03 17:48:31 -06:00
compute_erotate_sphere_atom.cpp
replace C-style include files with their C++ equivalents
2018-04-27 18:00:24 -04:00
compute_erotate_sphere_atom.h
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compute_erotate_sphere.cpp
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compute_erotate_sphere.h
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compute_fragment_atom.cpp
replace C-style include files with their C++ equivalents
2018-04-27 18:00:24 -04:00
compute_fragment_atom.h
add placeholders to include files for error messges
2018-04-03 17:48:31 -06:00
compute_global_atom.cpp
replace C-style include files with their C++ equivalents
2018-04-27 18:00:24 -04:00
compute_global_atom.h
add placeholders to include files for error messges
2018-04-03 17:48:31 -06:00
compute_group_group.cpp
replace C-style include files with their C++ equivalents
2018-04-27 18:00:24 -04:00
compute_group_group.h
add placeholders to include files for error messges
2018-04-03 17:48:31 -06:00
compute_gyration_chunk.cpp
replace C-style include files with their C++ equivalents
2018-04-27 18:00:24 -04:00
compute_gyration_chunk.h
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compute_gyration.cpp
replace C-style include files with their C++ equivalents
2018-04-27 18:00:24 -04:00
compute_gyration.h
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compute_heat_flux.cpp
replace C-style include files with their C++ equivalents
2018-04-27 18:00:24 -04:00
compute_heat_flux.h
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compute_hexorder_atom.cpp
replace C-style include files with their C++ equivalents
2018-04-27 18:00:24 -04:00
compute_hexorder_atom.h
Fix typos in src files
2017-03-05 21:03:40 -05:00
compute_improper_local.cpp
replace C-style include files with their C++ equivalents
2018-04-27 18:00:24 -04:00
compute_improper_local.h
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compute_improper.cpp
replace C-style include files with their C++ equivalents
2018-04-27 18:00:24 -04:00
compute_improper.h
add placeholders to include files for error messges
2018-04-03 17:48:31 -06:00
compute_inertia_chunk.cpp
replace C-style include files with their C++ equivalents
2018-04-27 18:00:24 -04:00
compute_inertia_chunk.h
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compute_ke_atom.cpp
replace C-style include files with their C++ equivalents
2018-04-27 18:00:24 -04:00
compute_ke_atom.h
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compute_ke.cpp
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compute_ke.h
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compute_msd_chunk.cpp
replace C-style include files with their C++ equivalents
2018-04-27 18:00:24 -04:00
compute_msd_chunk.h
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compute_msd.cpp
replace C-style include files with their C++ equivalents
2018-04-27 18:00:24 -04:00
compute_msd.h
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compute_omega_chunk.cpp
replace C-style include files with their C++ equivalents
2018-04-27 18:00:24 -04:00
compute_omega_chunk.h
add placeholders to include files for error messges
2018-04-03 17:48:31 -06:00
compute_orientorder_atom.cpp
replace C-style include files with their C++ equivalents
2018-04-27 18:00:24 -04:00
compute_orientorder_atom.h
replace leading tabs
2018-03-16 12:34:33 -04:00
compute_pair_local.cpp
replace C-style include files with their C++ equivalents
2018-04-27 18:00:24 -04:00
compute_pair_local.h
add placeholders to include files for error messges
2018-04-03 17:48:31 -06:00
compute_pair.cpp
replace C-style include files with their C++ equivalents
2018-04-27 18:00:24 -04:00
compute_pair.h
add placeholders to include files for error messges
2018-04-03 17:48:31 -06:00
compute_pe_atom.cpp
replace C-style include files with their C++ equivalents
2018-04-27 18:00:24 -04:00
compute_pe_atom.h
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compute_pe.cpp
replace C-style include files with their C++ equivalents
2018-04-27 18:00:24 -04:00
compute_pe.h
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compute_pressure.cpp
replace C-style include files with their C++ equivalents
2018-04-27 18:00:24 -04:00
compute_pressure.h
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compute_property_atom.cpp
replace C-style include files with their C++ equivalents
2018-04-27 18:00:24 -04:00
compute_property_atom.h
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compute_property_chunk.cpp
replace C-style include files with their C++ equivalents
2018-04-27 18:00:24 -04:00
compute_property_chunk.h
Fix typos in src files
2017-03-05 21:03:40 -05:00
compute_property_local.cpp
replace C-style include files with their C++ equivalents
2018-04-27 18:00:24 -04:00
compute_property_local.h
add placeholders to include files for error messges
2018-04-03 17:48:31 -06:00
compute_rdf.cpp
replace C-style include files with their C++ equivalents
2018-04-27 18:00:24 -04:00
compute_rdf.h
replace C-style include files with their C++ equivalents
2018-04-27 18:00:24 -04:00
compute_reduce_region.cpp
replace C-style include files with their C++ equivalents
2018-04-27 18:00:24 -04:00
compute_reduce_region.h
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compute_reduce.cpp
replace C-style include files with their C++ equivalents
2018-04-27 18:00:24 -04:00
compute_reduce.h
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compute_slice.cpp
replace C-style include files with their C++ equivalents
2018-04-27 18:00:24 -04:00
compute_slice.h
add placeholders to include files for error messges
2018-04-03 17:48:31 -06:00
compute_stress_atom.cpp
replace C-style include files with their C++ equivalents
2018-04-27 18:00:24 -04:00
compute_stress_atom.h
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compute_temp_chunk.cpp
replace C-style include files with their C++ equivalents
2018-04-27 18:00:24 -04:00
compute_temp_chunk.h
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compute_temp_com.cpp
replace C-style include files with their C++ equivalents
2018-04-27 18:00:24 -04:00
compute_temp_com.h
port thread-safe temperature biasing from LAMMPS-ICMS
2017-05-16 18:15:13 -04:00
compute_temp_deform.cpp
replace C-style include files with their C++ equivalents
2018-04-27 18:00:24 -04:00
compute_temp_deform.h
port thread-safe temperature biasing from LAMMPS-ICMS
2017-05-16 18:15:13 -04:00
compute_temp_partial.cpp
replace C-style include files with their C++ equivalents
2018-04-27 18:00:24 -04:00
compute_temp_partial.h
port thread-safe temperature biasing from LAMMPS-ICMS
2017-05-16 18:15:13 -04:00
compute_temp_profile.cpp
replace C-style include files with their C++ equivalents
2018-04-27 18:00:24 -04:00
compute_temp_profile.h
port thread-safe temperature biasing from LAMMPS-ICMS
2017-05-16 18:15:13 -04:00
compute_temp_ramp.cpp
replace C-style include files with their C++ equivalents
2018-04-27 18:00:24 -04:00
compute_temp_ramp.h
port thread-safe temperature biasing from LAMMPS-ICMS
2017-05-16 18:15:13 -04:00
compute_temp_region.cpp
replace C-style include files with their C++ equivalents
2018-04-27 18:00:24 -04:00
compute_temp_region.h
port thread-safe temperature biasing from LAMMPS-ICMS
2017-05-16 18:15:13 -04:00
compute_temp_sphere.cpp
replace C-style include files with their C++ equivalents
2018-04-27 18:00:24 -04:00
compute_temp_sphere.h
port thread-safe temperature biasing from LAMMPS-ICMS
2017-05-16 18:15:13 -04:00
compute_temp.cpp
replace C-style include files with their C++ equivalents
2018-04-27 18:00:24 -04:00
compute_temp.h
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compute_torque_chunk.cpp
replace C-style include files with their C++ equivalents
2018-04-27 18:00:24 -04:00
compute_torque_chunk.h
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compute_vacf.cpp
replace C-style include files with their C++ equivalents
2018-04-27 18:00:24 -04:00
compute_vacf.h
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compute_vcm_chunk.cpp
replace C-style include files with their C++ equivalents
2018-04-27 18:00:24 -04:00
compute_vcm_chunk.h
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compute.cpp
replace C-style include files with their C++ equivalents
2018-04-27 18:00:24 -04:00
compute.h
new dump_modify refresh and compute displace/atom refresh commands for incremental dump files
2018-03-27 14:37:04 -06:00
create_atoms.cpp
replace C-style include files with their C++ equivalents
2018-04-27 18:00:24 -04:00
create_atoms.h
Fix typos in src files
2017-03-05 21:03:40 -05:00
create_bonds.cpp
port bugfix for single/bond to single/angle and single/dihedral
2018-05-04 00:32:13 -04:00
create_bonds.h
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create_box.cpp
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delete_atoms.cpp
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delete_atoms.h
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delete_bonds.cpp
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delete_bonds.h
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Depend.sh
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2018-05-09 16:13:54 -04:00
dihedral_hybrid.cpp
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dihedral_hybrid.h
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dihedral_zero.cpp
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dihedral_zero.h
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dihedral.cpp
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dihedral.h
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displace_atoms.cpp
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displace_atoms.h
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domain.cpp
move enum{IGNORE,WARN,ERROR) into Thermo class and use Thermo:: namespace to reference it
2018-05-09 18:11:31 -04:00
domain.h
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dump_atom.cpp
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dump_cfg.cpp
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dump_custom.h
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dump_dcd.cpp
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dump_dcd.h
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dump_image.cpp
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dump_local.cpp
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dump_local.h
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dump_movie.cpp
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dump_xyz.cpp
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dump.cpp
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dump.h
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error.cpp
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error.h
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exceptions.h
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finish.cpp
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finish.h
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fix_adapt.cpp
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fix_adapt.h
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fix_addforce.cpp
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2018-04-27 18:00:24 -04:00
fix_addforce.h
Fix typos in src files
2017-03-05 21:03:40 -05:00
fix_ave_atom.cpp
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fix_ave_atom.h
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fix_ave_chunk.cpp
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fix_ave_chunk.h
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fix_ave_correlate.cpp
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fix_ave_correlate.h
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fix_ave_histo_weight.cpp
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fix_ave_histo_weight.h
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fix_ave_histo.cpp
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fix_ave_histo.h
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fix_ave_time.cpp
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fix_ave_time.h
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fix_aveforce.cpp
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fix_balance.cpp
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fix_balance.h
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fix_box_relax.cpp
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fix_controller.cpp
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fix_controller.h
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fix_deform.cpp
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fix_deform.h
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fix_deprecated.cpp
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fix_deprecated.h
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fix_drag.cpp
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fix_dt_reset.cpp
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fix_dt_reset.h
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fix_enforce2d.cpp
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fix_enforce2d.h
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fix_external.cpp
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fix_external.h
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fix_gravity.cpp
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fix_gravity.h
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fix_group.cpp
Merge pull request #878 from jrgissing/group_extract
2018-05-07 11:45:37 -06:00
fix_group.h
add extract to fix_group
2018-04-24 22:53:54 -06:00
fix_halt.cpp
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fix_halt.h
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fix_heat.cpp
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2018-04-27 18:00:24 -04:00
fix_heat.h
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fix_indent.cpp
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fix_indent.h
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fix_langevin.cpp
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fix_langevin.h
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fix_lineforce.cpp
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fix_lineforce.h
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fix_minimize.cpp
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fix_minimize.h
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fix_momentum.cpp
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2018-04-27 18:00:24 -04:00
fix_momentum.h
fix ave/chunk fixes, 2d disc option, fix_modify dynamic/dof
2017-03-23 15:31:27 -06:00
fix_move.cpp
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fix_move.h
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fix_neigh_history.cpp
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fix_neigh_history.h
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fix_nh_sphere.cpp
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fix_nh_sphere.h
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fix_nh.cpp
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fix_nh.h
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fix_nph_sphere.cpp
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fix_nph.cpp
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fix_npt_sphere.cpp
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fix_npt_sphere.h
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fix_npt.cpp
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fix_npt.h
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fix_nve_limit.cpp
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fix_nve_limit.h
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fix_nve_noforce.cpp
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fix_nve_noforce.h
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fix_nve_sphere.cpp
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fix_nve_sphere.h
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fix_nve.cpp
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fix_nvt_sllod.cpp
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fix_nvt_sllod.h
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fix_nvt_sphere.h
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fix_nvt.cpp
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fix_nvt.h
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fix_planeforce.cpp
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fix_planeforce.h
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fix_press_berendsen.cpp
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fix_press_berendsen.h
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fix_print.cpp
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fix_print.h
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fix_property_atom.cpp
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fix_property_atom.h
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fix_read_restart.cpp
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fix_read_restart.h
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fix_recenter.cpp
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fix_recenter.h
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fix_respa.cpp
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2018-04-27 18:00:24 -04:00
fix_respa.h
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fix_restrain.cpp
Update fix_restrain.cpp
2018-05-08 15:36:32 -04:00
fix_restrain.h
forgot to reduce energies
2018-05-08 10:46:41 +02:00
fix_setforce.cpp
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fix_setforce.h
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fix_spring_chunk.cpp
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fix_spring_chunk.h
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fix_spring_rg.cpp
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fix_spring_rg.h
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fix_spring_self.cpp
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fix_spring_self.h
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fix_spring.cpp
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fix_spring.h
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fix_store_force.cpp
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fix_store_force.h
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fix_store_state.cpp
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fix_store_state.h
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fix_store.h
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fix_temp_berendsen.cpp
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fix_temp_berendsen.h
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fix_temp_csld.cpp
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fix_temp_csld.h
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fix_temp_csvr.cpp
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fix_temp_rescale.cpp
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fix_temp_rescale.h
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fix_tmd.cpp
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fix_tmd.h
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fix_vector.cpp
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fix_vector.h
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fix_viscous.cpp
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fix_wall_harmonic.cpp
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fix_wall_harmonic.h
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fix_wall_lj93.cpp
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fix_wall_lj93.h
Adding fix_wall_lj93_kokkos
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fix_wall_lj126.cpp
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fix_wall_reflect.h
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fix_wall_region.cpp
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fix_wall_region.h
import changes to various fixes by aidan to include virial contributions
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fix_wall.cpp
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fix.cpp
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fix.h
Moved some stuff around.
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force.cpp
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force.h
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group.cpp
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group.h
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image.cpp
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image.h
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imbalance_group.cpp
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imbalance_group.h
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imbalance_neigh.cpp
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imbalance_neigh.h
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imbalance_store.cpp
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imbalance_store.h
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imbalance_time.cpp
remove trailing whitespace
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imbalance_time.h
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imbalance_var.cpp
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imbalance_var.h
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imbalance.h
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improper_hybrid.cpp
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improper_hybrid.h
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improper_zero.cpp
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improper_zero.h
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improper.cpp
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improper.h
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info.cpp
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input.cpp
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input.h
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Install.sh
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integrate.cpp
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integrate.h
default arguments on polymorph/pure methods can lead to unexpected overloading in derived classes
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irregular.cpp
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irregular.h
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kspace.cpp
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kspace.h
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lammps.cpp
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lammps.h
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lattice.cpp
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lattice.h
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library.cpp
more cosmetic changes to silence pedantic warnings
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library.h
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lmptype.h
Revert "workaround for ISFINITE() macro to work with the latest KOKKOS library update"
2018-05-03 13:08:15 -04:00
lmpwindows.h
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main.cpp
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Make.sh
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2018-05-09 16:13:54 -04:00
Makefile
Merge pull request #891 from akohlmey/collected-small-changes
2018-05-07 10:43:19 -06:00
Makefile.list
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2017-03-18 20:48:49 -04:00
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math_complex.h
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math_extra.cpp
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math_extra.h
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math_special.cpp
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math_special.h
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math_vector.h
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memory.cpp
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memory.h
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mergesort.h
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min_cg.cpp
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min.cpp
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min.h
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minimize.cpp
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modify.cpp
replace C-style include files with their C++ equivalents
2018-04-27 18:00:24 -04:00
modify.h
replace C-style include files with their C++ equivalents
2018-04-27 18:00:24 -04:00
molecule.cpp
replace variable length array in Molecule class with new/delete
2018-05-04 21:41:23 -04:00
molecule.h
add placeholders to include files for error messges
2018-04-03 17:48:31 -06:00
mpiio.h
…
my_page.h
replace C-style include files with their C++ equivalents
2018-04-27 18:00:24 -04:00
my_pool_chunk.h
replace C-style include files with their C++ equivalents
2018-04-27 18:00:24 -04:00
nbin_standard.cpp
move enum{NSQ,BIN,MULTI} to the Neighbor class in neighbor.h
2018-05-09 23:46:09 -04:00
nbin_standard.h
add placeholders to include files for error messges
2018-04-03 17:48:31 -06:00
nbin.cpp
replace C-style include files with their C++ equivalents
2018-04-27 18:00:24 -04:00
nbin.h
add placeholders to include files for error messges
2018-04-03 17:48:31 -06:00
neigh_list.cpp
move enum{NSQ,BIN,MULTI} to the Neighbor class in neighbor.h
2018-05-09 23:46:09 -04:00
neigh_list.h
Remove the now unused AIRct_ssa[] array from the NeighList class.
2017-11-03 13:42:36 -05:00
neigh_request.cpp
remove faulty line of code, left in by accident
2018-01-16 14:10:46 -05:00
neigh_request.h
whitespace cleanup
2018-03-15 21:57:45 -04:00
neighbor.cpp
move enum{NSQ,BIN,MULTI} to the Neighbor class in neighbor.h
2018-05-09 23:46:09 -04:00
neighbor.h
move enum{NSQ,BIN,MULTI} to the Neighbor class in neighbor.h
2018-05-09 23:46:09 -04:00
npair_copy.cpp
Moved some stuff around.
2017-10-26 12:25:55 -04:00
npair_copy.h
…
npair_full_bin_atomonly.cpp
bugfix for 2 recenty reported neighbor issues, also a ReaxFF fix species issue
2017-05-16 15:51:41 -06:00
npair_full_bin_atomonly.h
add placeholders to include files for error messges
2018-04-03 17:48:31 -06:00
npair_full_bin_ghost.cpp
bugfix for 2 recenty reported neighbor issues, also a ReaxFF fix species issue
2017-05-16 15:51:41 -06:00
npair_full_bin_ghost.h
add placeholders to include files for error messges
2018-04-03 17:48:31 -06:00
npair_full_bin.cpp
bugfix for 2 recenty reported neighbor issues, also a ReaxFF fix species issue
2017-05-16 15:51:41 -06:00
npair_full_bin.h
add placeholders to include files for error messges
2018-04-03 17:48:31 -06:00
npair_full_multi.cpp
bugfix for 2 recenty reported neighbor issues, also a ReaxFF fix species issue
2017-05-16 15:51:41 -06:00
npair_full_multi.h
add placeholders to include files for error messges
2018-04-03 17:48:31 -06:00
npair_full_nsq_ghost.cpp
…
npair_full_nsq_ghost.h
add placeholders to include files for error messges
2018-04-03 17:48:31 -06:00
npair_full_nsq.cpp
…
npair_full_nsq.h
add placeholders to include files for error messges
2018-04-03 17:48:31 -06:00
npair_half_bin_atomonly_newton.cpp
major neighbor list style whitespace cleanup
2017-05-30 17:04:48 -04:00
npair_half_bin_atomonly_newton.h
add placeholders to include files for error messges
2018-04-03 17:48:31 -06:00
npair_half_bin_newtoff_ghost.cpp
bugfix for 2 recenty reported neighbor issues, also a ReaxFF fix species issue
2017-05-16 15:51:41 -06:00
npair_half_bin_newtoff_ghost.h
add placeholders to include files for error messges
2018-04-03 17:48:31 -06:00
npair_half_bin_newtoff.cpp
bugfix for 2 recenty reported neighbor issues, also a ReaxFF fix species issue
2017-05-16 15:51:41 -06:00
npair_half_bin_newtoff.h
add placeholders to include files for error messges
2018-04-03 17:48:31 -06:00
npair_half_bin_newton_tri.cpp
bugfix for 2 recenty reported neighbor issues, also a ReaxFF fix species issue
2017-05-16 15:51:41 -06:00
npair_half_bin_newton_tri.h
add placeholders to include files for error messges
2018-04-03 17:48:31 -06:00
npair_half_bin_newton.cpp
bugfix for 2 recenty reported neighbor issues, also a ReaxFF fix species issue
2017-05-16 15:51:41 -06:00
npair_half_bin_newton.h
add placeholders to include files for error messges
2018-04-03 17:48:31 -06:00
npair_half_multi_newtoff.cpp
bugfix for 2 recenty reported neighbor issues, also a ReaxFF fix species issue
2017-05-16 15:51:41 -06:00
npair_half_multi_newtoff.h
add placeholders to include files for error messges
2018-04-03 17:48:31 -06:00
npair_half_multi_newton_tri.cpp
bugfix for 2 recenty reported neighbor issues, also a ReaxFF fix species issue
2017-05-16 15:51:41 -06:00
npair_half_multi_newton_tri.h
add placeholders to include files for error messges
2018-04-03 17:48:31 -06:00
npair_half_multi_newton.cpp
bugfix for 2 recenty reported neighbor issues, also a ReaxFF fix species issue
2017-05-16 15:51:41 -06:00
npair_half_multi_newton.h
add placeholders to include files for error messges
2018-04-03 17:48:31 -06:00
npair_half_nsq_newtoff_ghost.cpp
…
npair_half_nsq_newtoff_ghost.h
add placeholders to include files for error messges
2018-04-03 17:48:31 -06:00
npair_half_nsq_newtoff.cpp
…
npair_half_nsq_newtoff.h
add placeholders to include files for error messges
2018-04-03 17:48:31 -06:00
npair_half_nsq_newton.cpp
…
npair_half_nsq_newton.h
add placeholders to include files for error messges
2018-04-03 17:48:31 -06:00
npair_half_respa_bin_newtoff.cpp
Moved some stuff around.
2017-10-26 12:25:55 -04:00
npair_half_respa_bin_newtoff.h
add placeholders to include files for error messges
2018-04-03 17:48:31 -06:00
npair_half_respa_bin_newton_tri.cpp
Moved some stuff around.
2017-10-26 12:25:55 -04:00
npair_half_respa_bin_newton_tri.h
add placeholders to include files for error messges
2018-04-03 17:48:31 -06:00
npair_half_respa_bin_newton.cpp
Moved some stuff around.
2017-10-26 12:25:55 -04:00
npair_half_respa_bin_newton.h
add placeholders to include files for error messges
2018-04-03 17:48:31 -06:00
npair_half_respa_nsq_newtoff.cpp
Moved some stuff around.
2017-10-26 12:25:55 -04:00
npair_half_respa_nsq_newtoff.h
add placeholders to include files for error messges
2018-04-03 17:48:31 -06:00
npair_half_respa_nsq_newton.cpp
Moved some stuff around.
2017-10-26 12:25:55 -04:00
npair_half_respa_nsq_newton.h
add placeholders to include files for error messges
2018-04-03 17:48:31 -06:00
npair_half_size_bin_newtoff.cpp
replace C-style include files with their C++ equivalents
2018-04-27 18:00:24 -04:00
npair_half_size_bin_newtoff.h
add placeholders to include files for error messges
2018-04-03 17:48:31 -06:00
npair_half_size_bin_newton_tri.cpp
replace C-style include files with their C++ equivalents
2018-04-27 18:00:24 -04:00
npair_half_size_bin_newton_tri.h
add placeholders to include files for error messges
2018-04-03 17:48:31 -06:00
npair_half_size_bin_newton.cpp
replace C-style include files with their C++ equivalents
2018-04-27 18:00:24 -04:00
npair_half_size_bin_newton.h
add placeholders to include files for error messges
2018-04-03 17:48:31 -06:00
npair_half_size_nsq_newtoff.cpp
replace C-style include files with their C++ equivalents
2018-04-27 18:00:24 -04:00
npair_half_size_nsq_newtoff.h
add placeholders to include files for error messges
2018-04-03 17:48:31 -06:00
npair_half_size_nsq_newton.cpp
replace C-style include files with their C++ equivalents
2018-04-27 18:00:24 -04:00
npair_half_size_nsq_newton.h
add placeholders to include files for error messges
2018-04-03 17:48:31 -06:00
npair_halffull_newtoff.cpp
Tweak to npair_halffull_newtoff.cpp
2018-01-16 16:43:25 -07:00
npair_halffull_newtoff.h
add placeholders to include files for error messges
2018-04-03 17:48:31 -06:00
npair_halffull_newton.cpp
Only include ghosts for newton off, since this style exists as a standalone build, but the newton on method doesn't
2018-01-12 16:10:42 -07:00
npair_halffull_newton.h
add placeholders to include files for error messges
2018-04-03 17:48:31 -06:00
npair_skip_respa.cpp
Moved some stuff around.
2017-10-26 12:25:55 -04:00
npair_skip_respa.h
add placeholders to include files for error messges
2018-04-03 17:48:31 -06:00
npair_skip_size_off2on_oneside.cpp
replace C-style include files with their C++ equivalents
2018-04-27 18:00:24 -04:00
npair_skip_size_off2on_oneside.h
add placeholders to include files for error messges
2018-04-03 17:48:31 -06:00
npair_skip_size_off2on.cpp
replace C-style include files with their C++ equivalents
2018-04-27 18:00:24 -04:00
npair_skip_size_off2on.h
add placeholders to include files for error messges
2018-04-03 17:48:31 -06:00
npair_skip_size.cpp
replace C-style include files with their C++ equivalents
2018-04-27 18:00:24 -04:00
npair_skip_size.h
add placeholders to include files for error messges
2018-04-03 17:48:31 -06:00
npair_skip.cpp
new SNAP potential for W
2017-02-21 15:49:21 -07:00
npair_skip.h
add placeholders to include files for error messges
2018-04-03 17:48:31 -06:00
npair.cpp
replace C-style include files with their C++ equivalents
2018-04-27 18:00:24 -04:00
npair.h
add placeholders to include files for error messges
2018-04-03 17:48:31 -06:00
nstencil_full_bin_2d.cpp
major neighbor list style whitespace cleanup
2017-05-30 17:04:48 -04:00
nstencil_full_bin_2d.h
major neighbor list style whitespace cleanup
2017-05-30 17:04:48 -04:00
nstencil_full_bin_3d.cpp
…
nstencil_full_bin_3d.h
major neighbor list style whitespace cleanup
2017-05-30 17:04:48 -04:00
nstencil_full_ghost_bin_2d.cpp
…
nstencil_full_ghost_bin_2d.h
major neighbor list style whitespace cleanup
2017-05-30 17:04:48 -04:00
nstencil_full_ghost_bin_3d.cpp
…
nstencil_full_ghost_bin_3d.h
major neighbor list style whitespace cleanup
2017-05-30 17:04:48 -04:00
nstencil_full_multi_2d.cpp
…
nstencil_full_multi_2d.h
major neighbor list style whitespace cleanup
2017-05-30 17:04:48 -04:00
nstencil_full_multi_3d.cpp
…
nstencil_full_multi_3d.h
…
nstencil_half_bin_2d_newtoff.cpp
major neighbor list style whitespace cleanup
2017-05-30 17:04:48 -04:00
nstencil_half_bin_2d_newtoff.h
…
nstencil_half_bin_2d_newton_tri.cpp
major neighbor list style whitespace cleanup
2017-05-30 17:04:48 -04:00
nstencil_half_bin_2d_newton_tri.h
…
nstencil_half_bin_2d_newton.cpp
…
nstencil_half_bin_2d_newton.h
…
nstencil_half_bin_3d_newtoff.cpp
major neighbor list style whitespace cleanup
2017-05-30 17:04:48 -04:00
nstencil_half_bin_3d_newtoff.h
…
nstencil_half_bin_3d_newton_tri.cpp
major neighbor list style whitespace cleanup
2017-05-30 17:04:48 -04:00
nstencil_half_bin_3d_newton_tri.h
…
nstencil_half_bin_3d_newton.cpp
…
nstencil_half_bin_3d_newton.h
…
nstencil_half_ghost_bin_2d_newtoff.cpp
…
nstencil_half_ghost_bin_2d_newtoff.h
major neighbor list style whitespace cleanup
2017-05-30 17:04:48 -04:00
nstencil_half_ghost_bin_3d_newtoff.cpp
…
nstencil_half_ghost_bin_3d_newtoff.h
…
nstencil_half_multi_2d_newtoff.cpp
…
nstencil_half_multi_2d_newtoff.h
…
nstencil_half_multi_2d_newton_tri.cpp
…
nstencil_half_multi_2d_newton_tri.h
…
nstencil_half_multi_2d_newton.cpp
…
nstencil_half_multi_2d_newton.h
…
nstencil_half_multi_3d_newtoff.cpp
…
nstencil_half_multi_3d_newtoff.h
…
nstencil_half_multi_3d_newton_tri.cpp
…
nstencil_half_multi_3d_newton_tri.h
…
nstencil_half_multi_3d_newton.cpp
…
nstencil_half_multi_3d_newton.h
…
nstencil.cpp
move enum{NSQ,BIN,MULTI} to the Neighbor class in neighbor.h
2018-05-09 23:46:09 -04:00
nstencil.h
USER-DPD: SSA with Kokkos: make stencil's sx, sy, sz variables public
2017-02-22 15:08:21 -05:00
ntopo_angle_all.cpp
move enum{IGNORE,WARN,ERROR) into Thermo class and use Thermo:: namespace to reference it
2018-05-09 18:11:31 -04:00
ntopo_angle_all.h
add placeholders to include files for error messges
2018-04-03 17:48:31 -06:00
ntopo_angle_partial.cpp
move enum{IGNORE,WARN,ERROR) into Thermo class and use Thermo:: namespace to reference it
2018-05-09 18:11:31 -04:00
ntopo_angle_partial.h
add placeholders to include files for error messges
2018-04-03 17:48:31 -06:00
ntopo_angle_template.cpp
move enum{IGNORE,WARN,ERROR) into Thermo class and use Thermo:: namespace to reference it
2018-05-09 18:11:31 -04:00
ntopo_angle_template.h
add placeholders to include files for error messges
2018-04-03 17:48:31 -06:00
ntopo_bond_all.cpp
move enum{IGNORE,WARN,ERROR) into Thermo class and use Thermo:: namespace to reference it
2018-05-09 18:11:31 -04:00
ntopo_bond_all.h
add placeholders to include files for error messges
2018-04-03 17:48:31 -06:00
ntopo_bond_partial.cpp
move enum{IGNORE,WARN,ERROR) into Thermo class and use Thermo:: namespace to reference it
2018-05-09 18:11:31 -04:00
ntopo_bond_partial.h
add placeholders to include files for error messges
2018-04-03 17:48:31 -06:00
ntopo_bond_template.cpp
move enum{IGNORE,WARN,ERROR) into Thermo class and use Thermo:: namespace to reference it
2018-05-09 18:11:31 -04:00
ntopo_bond_template.h
add placeholders to include files for error messges
2018-04-03 17:48:31 -06:00
ntopo_dihedral_all.cpp
move enum{IGNORE,WARN,ERROR) into Thermo class and use Thermo:: namespace to reference it
2018-05-09 18:11:31 -04:00
ntopo_dihedral_all.h
add placeholders to include files for error messges
2018-04-03 17:48:31 -06:00
ntopo_dihedral_partial.cpp
move enum{IGNORE,WARN,ERROR) into Thermo class and use Thermo:: namespace to reference it
2018-05-09 18:11:31 -04:00
ntopo_dihedral_partial.h
add placeholders to include files for error messges
2018-04-03 17:48:31 -06:00
ntopo_dihedral_template.cpp
move enum{IGNORE,WARN,ERROR) into Thermo class and use Thermo:: namespace to reference it
2018-05-09 18:11:31 -04:00
ntopo_dihedral_template.h
add placeholders to include files for error messges
2018-04-03 17:48:31 -06:00
ntopo_improper_all.cpp
move enum{IGNORE,WARN,ERROR) into Thermo class and use Thermo:: namespace to reference it
2018-05-09 18:11:31 -04:00
ntopo_improper_all.h
add placeholders to include files for error messges
2018-04-03 17:48:31 -06:00
ntopo_improper_partial.cpp
move enum{IGNORE,WARN,ERROR) into Thermo class and use Thermo:: namespace to reference it
2018-05-09 18:11:31 -04:00
ntopo_improper_partial.h
add placeholders to include files for error messges
2018-04-03 17:48:31 -06:00
ntopo_improper_template.cpp
move enum{IGNORE,WARN,ERROR) into Thermo class and use Thermo:: namespace to reference it
2018-05-09 18:11:31 -04:00
ntopo_improper_template.h
add placeholders to include files for error messges
2018-04-03 17:48:31 -06:00
ntopo.cpp
replace C-style include files with their C++ equivalents
2018-04-27 18:00:24 -04:00
ntopo.h
move enum{IGNORE,WARN,ERROR) into Thermo class and use Thermo:: namespace to reference it
2018-05-09 18:11:31 -04:00
output.cpp
replace C-style include files with their C++ equivalents
2018-04-27 18:00:24 -04:00
output.h
fix gcmc updates from Aidan, trimming of output for replica commands
2017-04-11 08:35:09 -06:00
pack.h
…
Package.sh
update dependencies for USER-CGSDK package. make script permissions consistent
2018-05-09 16:13:54 -04:00
pair_beck.cpp
replace C-style include files with their C++ equivalents
2018-04-27 18:00:24 -04:00
pair_beck.h
…
pair_born_coul_dsf.cpp
replace C-style include files with their C++ equivalents
2018-04-27 18:00:24 -04:00
pair_born_coul_dsf.h
…
pair_born_coul_wolf.cpp
replace C-style include files with their C++ equivalents
2018-04-27 18:00:24 -04:00
pair_born_coul_wolf.h
…
pair_born.cpp
replace C-style include files with their C++ equivalents
2018-04-27 18:00:24 -04:00
pair_born.h
…
pair_buck_coul_cut.cpp
replace C-style include files with their C++ equivalents
2018-04-27 18:00:24 -04:00
pair_buck_coul_cut.h
…
pair_buck.cpp
replace C-style include files with their C++ equivalents
2018-04-27 18:00:24 -04:00
pair_buck.h
…
pair_coul_cut.cpp
replace C-style include files with their C++ equivalents
2018-04-27 18:00:24 -04:00
pair_coul_cut.h
…
pair_coul_debye.cpp
replace C-style include files with their C++ equivalents
2018-04-27 18:00:24 -04:00
pair_coul_debye.h
…
pair_coul_dsf.cpp
replace C-style include files with their C++ equivalents
2018-04-27 18:00:24 -04:00
pair_coul_dsf.h
…
pair_coul_streitz.cpp
replace C-style include files with their C++ equivalents
2018-04-27 18:00:24 -04:00
pair_coul_streitz.h
replace leading tabs
2018-03-16 12:34:33 -04:00
pair_coul_wolf.cpp
replace C-style include files with their C++ equivalents
2018-04-27 18:00:24 -04:00
pair_coul_wolf.h
…
pair_dpd_tstat.cpp
replace C-style include files with their C++ equivalents
2018-04-27 18:00:24 -04:00
pair_dpd_tstat.h
…
pair_dpd.cpp
replace C-style include files with their C++ equivalents
2018-04-27 18:00:24 -04:00
pair_dpd.h
…
pair_gauss.cpp
replace C-style include files with their C++ equivalents
2018-04-27 18:00:24 -04:00
pair_gauss.h
add placeholders to include files for error messges
2018-04-03 17:48:31 -06:00
pair_hybrid_overlay.cpp
replace C-style include files with their C++ equivalents
2018-04-27 18:00:24 -04:00
pair_hybrid_overlay.h
Merge branch 'master' into USER-DPD_kokkos as of patch 21Feb17
2017-02-22 11:29:01 -05:00
pair_hybrid.cpp
replace C-style include files with their C++ equivalents
2018-04-27 18:00:24 -04:00
pair_hybrid.h
replace C-style include files with their C++ equivalents
2018-04-27 18:00:24 -04:00
pair_lj96_cut.cpp
replace C-style include files with their C++ equivalents
2018-04-27 18:00:24 -04:00
pair_lj96_cut.h
Moved some stuff around.
2017-10-26 12:25:55 -04:00
pair_lj_cubic.cpp
replace C-style include files with their C++ equivalents
2018-04-27 18:00:24 -04:00
pair_lj_cubic.h
…
pair_lj_cut_coul_cut.cpp
replace C-style include files with their C++ equivalents
2018-04-27 18:00:24 -04:00
pair_lj_cut_coul_cut.h
…
pair_lj_cut_coul_debye.cpp
replace C-style include files with their C++ equivalents
2018-04-27 18:00:24 -04:00
pair_lj_cut_coul_debye.h
…
pair_lj_cut_coul_dsf.cpp
replace C-style include files with their C++ equivalents
2018-04-27 18:00:24 -04:00
pair_lj_cut_coul_dsf.h
…
pair_lj_cut_coul_wolf.cpp
replace C-style include files with their C++ equivalents
2018-04-27 18:00:24 -04:00
pair_lj_cut_coul_wolf.h
add placeholders to include files for error messges
2018-04-03 17:48:31 -06:00
pair_lj_cut.cpp
replace C-style include files with their C++ equivalents
2018-04-27 18:00:24 -04:00
pair_lj_cut.h
Moved some stuff around.
2017-10-26 12:25:55 -04:00
pair_lj_expand.cpp
replace C-style include files with their C++ equivalents
2018-04-27 18:00:24 -04:00
pair_lj_expand.h
…
pair_lj_gromacs_coul_gromacs.cpp
replace C-style include files with their C++ equivalents
2018-04-27 18:00:24 -04:00
pair_lj_gromacs_coul_gromacs.h
…
pair_lj_gromacs.cpp
replace C-style include files with their C++ equivalents
2018-04-27 18:00:24 -04:00
pair_lj_gromacs.h
…
pair_lj_smooth_linear.cpp
replace C-style include files with their C++ equivalents
2018-04-27 18:00:24 -04:00
pair_lj_smooth_linear.h
alias pair style lj/sf to lj/smooth/linear and remove/update related files
2017-06-06 17:26:06 -04:00
pair_lj_smooth.cpp
replace C-style include files with their C++ equivalents
2018-04-27 18:00:24 -04:00
pair_lj_smooth.h
…
pair_mie_cut.cpp
replace C-style include files with their C++ equivalents
2018-04-27 18:00:24 -04:00
pair_mie_cut.h
Moved some stuff around.
2017-10-26 12:25:55 -04:00
pair_morse.cpp
replace C-style include files with their C++ equivalents
2018-04-27 18:00:24 -04:00
pair_morse.h
remove trailing whitespace
2018-03-16 12:37:27 -04:00
pair_soft.cpp
replace C-style include files with their C++ equivalents
2018-04-27 18:00:24 -04:00
pair_soft.h
…
pair_table.cpp
replace C-style include files with their C++ equivalents
2018-04-27 18:00:24 -04:00
pair_table.h
add placeholders to include files for error messges
2018-04-03 17:48:31 -06:00
pair_ufm.cpp
replace C-style include files with their C++ equivalents
2018-04-27 18:00:24 -04:00
pair_ufm.h
whitespace cleanup
2018-03-15 21:57:45 -04:00
pair_yukawa.cpp
replace C-style include files with their C++ equivalents
2018-04-27 18:00:24 -04:00
pair_yukawa.h
Undid the removal of rad in pair_yukawa.
2017-11-17 15:07:59 -05:00
pair_zbl.cpp
replace C-style include files with their C++ equivalents
2018-04-27 18:00:24 -04:00
pair_zbl.h
Add Kokkos versions of pair_style snap and zbl
2018-01-09 17:03:49 -07:00
pair_zero.cpp
replace C-style include files with their C++ equivalents
2018-04-27 18:00:24 -04:00
pair_zero.h
add placeholders to include files for error messges
2018-04-03 17:48:31 -06:00
pair.cpp
replace C-style include files with their C++ equivalents
2018-04-27 18:00:24 -04:00
pair.h
add placeholders to include files for error messges
2018-04-03 17:48:31 -06:00
pointers.h
Make memory_kokkos its own class
2017-12-01 09:13:31 -07:00
procmap.cpp
move enum{SINGLE,MULTI} and enum{MULTIPLE} to Comm in comm.h
2018-05-09 23:57:24 -04:00
procmap.h
…
Purge.list
purge deleted file in KIM package
2018-04-04 13:24:05 -04:00
python.cpp
implement functions to execute arbitrary python code from strings or files and recast the python source keyword through using them.
2017-05-11 22:39:08 -04:00
python.h
add placeholders to include files for error messges
2018-04-03 17:48:31 -06:00
random_mars.cpp
replace C-style include files with their C++ equivalents
2018-04-27 18:00:24 -04:00
random_mars.h
…
random_park.cpp
replace C-style include files with their C++ equivalents
2018-04-27 18:00:24 -04:00
random_park.h
…
rcb.cpp
replace C-style include files with their C++ equivalents
2018-04-27 18:00:24 -04:00
rcb.h
whitespace cleanup
2018-03-15 21:57:45 -04:00
read_data.cpp
replace C-style include files with their C++ equivalents
2018-04-27 18:00:24 -04:00
read_data.h
replace C-style include files with their C++ equivalents
2018-04-27 18:00:24 -04:00
read_dump.cpp
replace C-style include files with their C++ equivalents
2018-04-27 18:00:24 -04:00
read_dump.h
replace C-style include files with their C++ equivalents
2018-04-27 18:00:24 -04:00
read_restart.cpp
replace C-style include files with their C++ equivalents
2018-04-27 18:00:24 -04:00
read_restart.h
replace C-style include files with their C++ equivalents
2018-04-27 18:00:24 -04:00
reader_native.cpp
replace C-style include files with their C++ equivalents
2018-04-27 18:00:24 -04:00
reader_native.h
…
reader_xyz.cpp
replace C-style include files with their C++ equivalents
2018-04-27 18:00:24 -04:00
reader_xyz.h
…
reader.cpp
replace C-style include files with their C++ equivalents
2018-04-27 18:00:24 -04:00
reader.h
…
region_block.cpp
replace C-style include files with their C++ equivalents
2018-04-27 18:00:24 -04:00
region_block.h
…
region_cone.cpp
replace C-style include files with their C++ equivalents
2018-04-27 18:00:24 -04:00
region_cone.h
add placeholders to include files for error messges
2018-04-03 17:48:31 -06:00
region_cylinder.cpp
replace C-style include files with their C++ equivalents
2018-04-27 18:00:24 -04:00
region_cylinder.h
add placeholders to include files for error messges
2018-04-03 17:48:31 -06:00
region_intersect.cpp
replace C-style include files with their C++ equivalents
2018-04-27 18:00:24 -04:00
region_intersect.h
…
region_plane.cpp
replace C-style include files with their C++ equivalents
2018-04-27 18:00:24 -04:00
region_plane.h
…
region_prism.cpp
replace C-style include files with their C++ equivalents
2018-04-27 18:00:24 -04:00
region_prism.h
…
region_sphere.cpp
replace C-style include files with their C++ equivalents
2018-04-27 18:00:24 -04:00
region_sphere.h
Spelling fixes in source files
2017-03-05 18:30:39 -05:00
region_union.cpp
replace C-style include files with their C++ equivalents
2018-04-27 18:00:24 -04:00
region_union.h
…
region.cpp
replace C-style include files with their C++ equivalents
2018-04-27 18:00:24 -04:00
region.h
cleanup embedded or trailing tabs
2018-03-16 13:21:54 -04:00
replicate.cpp
replace C-style include files with their C++ equivalents
2018-04-27 18:00:24 -04:00
replicate.h
…
rerun.cpp
replace C-style include files with their C++ equivalents
2018-04-27 18:00:24 -04:00
rerun.h
…
reset_ids.cpp
new reset_ids command and dump_modify delay option
2018-03-28 11:31:35 -06:00
reset_ids.h
add placeholders to include files for error messges
2018-04-03 17:48:31 -06:00
respa.cpp
replace C-style include files with their C++ equivalents
2018-04-27 18:00:24 -04:00
respa.h
default arguments on polymorph/pure methods can lead to unexpected overloading in derived classes
2018-02-22 07:53:58 -05:00
run.cpp
replace C-style include files with their C++ equivalents
2018-04-27 18:00:24 -04:00
run.h
add placeholders to include files for error messges
2018-04-03 17:48:31 -06:00
set.cpp
replace C-style include files with their C++ equivalents
2018-04-27 18:00:24 -04:00
set.h
add placeholders to include files for error messges
2018-04-03 17:48:31 -06:00
special.cpp
replace C-style include files with their C++ equivalents
2018-04-27 18:00:24 -04:00
special.h
change ring communication API to no longer require a static variable pointing to 'this' of the caller
2017-06-14 17:01:06 -04:00
suffix.h
…
thermo.cpp
move enum{IGNORE,WARN,ERROR) into Thermo class and use Thermo:: namespace to reference it
2018-05-09 18:11:31 -04:00
thermo.h
move enum{IGNORE,WARN,ERROR) into Thermo class and use Thermo:: namespace to reference it
2018-05-09 18:11:31 -04:00
timer.cpp
revert <cstdint> back to <stdint.h> as the former seems to require C++-11
2018-04-27 18:25:30 -04:00
timer.h
add placeholders to include files for error messges
2018-04-03 17:48:31 -06:00
universe.cpp
replace C-style include files with their C++ equivalents
2018-04-27 18:00:24 -04:00
universe.h
replace C-style include files with their C++ equivalents
2018-04-27 18:00:24 -04:00
update.cpp
replace C-style include files with their C++ equivalents
2018-04-27 18:00:24 -04:00
update.h
…
variable.cpp
replace C-style include files with their C++ equivalents
2018-04-27 18:00:24 -04:00
variable.h
replace C-style include files with their C++ equivalents
2018-04-27 18:00:24 -04:00
velocity.cpp
replace C-style include files with their C++ equivalents
2018-04-27 18:00:24 -04:00
velocity.h
add placeholders to include files for error messges
2018-04-03 17:48:31 -06:00
verlet.cpp
replace C-style include files with their C++ equivalents
2018-04-27 18:00:24 -04:00
verlet.h
default arguments on polymorph/pure methods can lead to unexpected overloading in derived classes
2018-02-22 07:53:58 -05:00
version.h
patch 20Apr18
2018-04-20 17:22:38 -06:00
write_coeff.cpp
replace C-style include files with their C++ equivalents
2018-04-27 18:00:24 -04:00
write_coeff.h
replace C-style include files with their C++ equivalents
2018-04-27 18:00:24 -04:00
write_data.cpp
move enum{IGNORE,WARN,ERROR) into Thermo class and use Thermo:: namespace to reference it
2018-05-09 18:11:31 -04:00
write_data.h
replace C-style include files with their C++ equivalents
2018-04-27 18:00:24 -04:00
write_dump.cpp
replace C-style include files with their C++ equivalents
2018-04-27 18:00:24 -04:00
write_dump.h
…
write_restart.cpp
move enum{IGNORE,WARN,ERROR) into Thermo class and use Thermo:: namespace to reference it
2018-05-09 18:11:31 -04:00
write_restart.h
replace C-style include files with their C++ equivalents
2018-04-27 18:00:24 -04:00