Commit Graph

32844 Commits

Author SHA1 Message Date
8c5ebb3942 Edit to make auto-merging easier 2022-10-25 08:34:48 -05:00
dfaff2dc9a Pre-emptive edits to ease auto-merging 2022-10-25 08:30:21 -05:00
ffa0460ca0 Merge branch 'lammps:develop' into fortran-expansion 2022-10-24 11:53:19 -05:00
463ff1499c Added reminder to fortran/lammps.f90 in sync with tools/swig/lammps.i 2022-10-24 11:52:51 -05:00
43bd7cfaf4 Merge pull request #3498 from schererc/develop
Update pair_threebody_table.cpp
2022-10-24 10:24:45 -04:00
785b46e57b Implemented lmp_gather_bonds, lmp_find_*_neighlist, lmp_neighlist_num_elements, and their unit tests and documentation 2022-10-24 01:00:48 -05:00
cd621e74f5 it is safer to do a >= comparison instead of == for floating point numbers 2022-10-22 15:03:37 -04:00
94627b3ef7 remove redundant curly braces 2022-10-22 14:54:53 -04:00
b96028eaf2 Update pair_threebody_table.cpp
Correcting for hard coded ntheta = 79 in the extreme case that theta is exactly equal to 180.0 degrees.
2022-10-22 16:38:37 +02:00
2275281c2e Fixed double-colon "feature" in sphinx documetnation (theme.css) 2022-10-21 15:52:39 -05:00
a8670f1ce9 Fixed potential inconsistency in lmp_error 2022-10-21 13:44:39 -05:00
fe09f1209e Fixed spacing 2022-10-21 12:41:07 -05:00
3c936d5a2b Fixed extract_atom doc 2022-10-21 12:16:57 -05:00
3cef658789 Added ":to:" fields to Fortran.rst; edits to :r's for consistency 2022-10-21 12:10:00 -05:00
6bb3ae83fd Fixed typo in Manual.rst 2022-10-21 10:59:48 -05:00
337d3f0760 Made module references more uniform 2022-10-21 10:58:05 -05:00
ed7d608919 Fixed hyperlinks to LIBLAMMPS in Fortran.rst 2022-10-21 09:53:07 -05:00
b6287a0fe6 Tweaks to Fortran docs 2022-10-21 00:34:24 -05:00
7ce04c8fe1 Fixed spacing on type lammps fields 2022-10-21 00:09:17 -05:00
112d616e57 unit tests for has_style, style_count, and style_name; added them to docs 2022-10-20 23:22:43 -05:00
60318a5a26 Refactor Fortran properties test into configuration; implemented several configuration functions and wrote unit tests for them; implemented missing unit tests 2022-10-20 20:24:59 -05:00
34121e5545 Implemented decode_image_flags and its unit test; updated documentation 2022-10-20 00:27:57 -05:00
b51c50294e implemented create_atoms and encode_image_flags and unit tests for them; added IMGMASK and friends to extract_setting and unit tests for them; wrote documentation for them 2022-10-19 18:40:12 -05:00
9a732ba513 Fortran implementation of create_atoms + unittests 2022-10-19 09:56:54 -05:00
b44e353d4a Merge pull request #3489 from hammondkd/doc-fixes
Doc fixes (round 4)
2022-10-17 22:36:55 -04:00
7ac70cedd9 Merge pull request #3488 from weinbe2/feature/tersoff-tune
Improving stability of the performance of Tersoff/Kokkos across compiler and Kokkos versions
2022-10-17 21:26:55 -04:00
598e8cc488 Port changes to other Tersoff styles 2022-10-17 15:31:34 -06:00
ad048a20d7 Remove unused variables 2022-10-17 14:42:09 -06:00
637810515a make compute rigid/local consistent with other "possible attributes" docs 2022-10-17 14:51:10 -05:00
c03f5a42e6 Merge pull request #3490 from yury-lysogorskiy/upd/refactor-includes
ML-PACE: upd/refactor includes
2022-10-17 14:12:46 -04:00
57dad8dc39 Host path needs RangePolicy 2022-10-17 11:25:01 -06:00
fc8d9207c6 update Makefile.lammps, too. 2022-10-17 12:22:28 -04:00
a981843686 forgot updated Makefile 2022-10-17 11:51:50 -04:00
677997699d more consistency 2022-10-15 15:35:29 -04:00
9f20347375 update PACE library for conventional build 2022-10-15 15:10:01 -04:00
ed59ee6cad Merge branch 'ml-pace-include-refactor' into upd/refactor-includes 2022-10-15 15:07:55 -04:00
c8aea98b20 Merge branch 'develop' into ml-pace-include-refactor 2022-10-15 15:05:16 -04:00
4bf1339950 update pair_pace.cpp / pair_pace_extrapolation.cpp 2022-10-15 18:23:59 +02:00
2f60db4aba Merge remote-tracking branch 'upstream/develop' into upd/refactor-includes
# Conflicts:
#	cmake/Modules/Packages/ML-PACE.cmake
2022-10-15 18:07:07 +02:00
33681b5d84 WIP: update ML-PACE.cmake 2022-10-15 18:06:07 +02:00
9e43e9792c Fixed a couple more mathbf->boldsymbol errors in fix brownian doc 2022-10-15 10:47:33 -05:00
09a14d558d explicitly select Times New Roman for \textrm, Helvetica for \textsf and Times New Roman for math as well 2022-10-14 21:27:55 -04:00
2b18f6a3d3 replace tab 2022-10-14 21:27:00 -04:00
b586b72ddd removed an extra space 2022-10-14 18:27:21 -05:00
77958b5ef1 Missed one I->i edit 2022-10-14 18:04:49 -05:00
e346151271 Updated docs for fixes bond/break, bond/create, and bond/react for math/etc. 2022-10-14 17:40:22 -05:00
3d0a7d774a Updated docs for fix bocs to match source code and include math 2022-10-14 16:04:07 -05:00
7550fdc862 Sphinx conf edit so PDF ToC entries w/ subsections >= 100 work 2022-10-14 15:28:55 -05:00
adb93d92ec Merge branch 'lammps:develop' into feature/tersoff-tune 2022-10-14 10:47:08 -04:00
e37672e7de Abstracted Tersoff potential calculation into a stand-alone function; used it to create MDRangePolicy and TeamPolicy versions of Tersoff with more tunable -> higher performance 2022-10-14 10:45:59 -04:00