Commit Graph

34223 Commits

Author SHA1 Message Date
a155ef8695 add MEAM example to fire minimizer examples 2023-01-12 23:26:30 -05:00
0104824727 remove min style fire/old 2023-01-11 07:33:16 -05:00
f5a8a0c398 update examples. add abcfire variants 2023-01-10 16:28:18 -05:00
8800adf1cd fully integrate ABC-FIRE and make it a min_modify option 2023-01-10 16:20:00 -05:00
58097b2e5f fold abcfire code into MinFire class 2023-01-09 20:49:57 -05:00
b3396f109b Merge pull request #3589 from akohlmey/collected-small-fixes
Collected small fixes and changes
2023-01-09 19:07:03 -05:00
f3b14bc39c Merge pull request #3576 from ndtrung81/dielectric-updates
Updates to the DIELECTRIC package
2023-01-09 16:25:24 -05:00
f88bfbb6af use enumerators for symbolic constants to flag integrator and linesearch styles
also a small update to error, warning, and info output
2023-01-09 13:32:04 -05:00
d907baac83 sync docs with fire minimizer code features 2023-01-09 13:30:29 -05:00
36fbf05ac0 Merge pull request #3590 from akohlmey/lepton-zbl
Add a custom zbl() function to lepton pair styles
2023-01-09 11:30:38 -05:00
0d815a09a7 add unit test for custom zbl() function 2023-01-09 07:20:44 -05:00
8e2f2922d6 throw exception in case an unexpected derivative is requested 2023-01-09 07:16:16 -05:00
f34fd96185 Fixed typos in compute efield/atom and bug with set charge for atom_style dieletric 2023-01-09 00:26:30 -06:00
954f6ed1f3 fix double word 2023-01-08 15:51:22 -05:00
52b84c9776 use_qscaled must be initialized in the constructor 2023-01-08 14:07:46 -05:00
4ab1ce5d7d consistently use Kokkos:: namespace prefix when calling deep_copy() 2023-01-08 11:07:47 -05:00
caa7940b34 fix typo 2023-01-08 11:03:32 -05:00
f832a7ed46 Merge branch 'develop' into dielectric-updates 2023-01-08 10:52:30 -05:00
32a6b70b01 whitespace 2023-01-08 10:52:23 -05:00
5e837d23cc make sure member pointer is initialized and apply clang-format 2023-01-08 04:43:43 -05:00
3e06512418 plug small memory leak 2023-01-08 04:43:14 -05:00
6c914a7e37 add support for a custom zbl() function to lepton pair styles 2023-01-08 01:26:41 -05:00
d75e417a32 modernize error message creation 2023-01-07 16:39:28 -05:00
334643b300 avoid sprintf() 2023-01-07 16:13:27 -05:00
79820945f6 correct computation of number of packages for unit test 2023-01-07 15:55:04 -05:00
d572d8f051 avoid sprintf() through C++ features and libfmt 2023-01-07 15:47:46 -05:00
1556460b8f silence bogus warning about atom IDs with dump image/movie 2023-01-07 15:18:29 -05:00
141a6208a9 avoid sprintf 2023-01-07 07:45:11 -05:00
fb3180eae8 silence compiler warning 2023-01-07 07:18:25 -05:00
fc10c9d354 MESONT package needs explicit dependencies because mesocnt bond depends on harmonic 2023-01-06 22:18:50 -05:00
d4e2200c8c restore building of simple bundled libraries 2023-01-06 22:18:50 -05:00
f1471725e9 allow to always build the C++-only parts of the MESONT package 2023-01-06 22:18:50 -05:00
3036f8d4c6 Conditionally support the CONFIGURE_DEPENDS flag for globbing of CMake 3.12 and later.
# Conflicts:
#	cmake/Modules/Packages/COLVARS.cmake
2023-01-06 22:18:50 -05:00
a7ba11fee9 mliappy fixes for kokkos support 2023-01-06 22:18:49 -05:00
6a8df032b6 Merge pull request #3582 from athomps/sllod_variants
Implement sllod variants
2023-01-06 21:55:10 -05:00
be5cede69f Merge pull request #3551 from akohlmey/compute-efield-atom-wolf
Add new compute efield/wolf/atom command
2023-01-06 20:29:38 -05:00
aee93dbe69 Merge pull request #3571 from akohlmey/lepton-package
LEPTON package using the Lepton library to compute forces from expression strings
2023-01-06 18:41:18 -05:00
fbbe66c8bd Merge branch 'develop' into lepton-package 2023-01-06 17:53:23 -05:00
a218071b2b Merge pull request #3574 from akohlmey/collected-small-changes
Collected small changes and fixes
2023-01-06 16:24:19 -05:00
b2226f9c70 Merge pull request #3588 from srtee/electrode-intel
simplified intel suffix styles in ELECTRODE
2023-01-06 15:33:00 -05:00
7fd9086c65 whitespace 2023-01-06 14:44:18 -05:00
f007eaf946 Merge branch 'develop' into collected-small-changes 2023-01-06 14:41:22 -05:00
9a8455f546 Merge pull request #3577 from bathmatt/kokkos-mliap-pytorch
Have PyTorch interface for MLIAP working in Kokkos.  This uses cuPy a…
2023-01-06 14:24:10 -05:00
ddc8ed8c2d Merge branch 'develop' into collected-small-changes
# Conflicts:
#	src/dump.cpp
2023-01-06 13:09:22 -05:00
f6d8df5706 add unit tests for lepton/coul 2023-01-06 13:07:55 -05:00
3878cfa9b0 Merge pull request #3587 from akohlmey/collected-fixes
Collected fixes subset of pull request #3574
2023-01-06 12:57:19 -05:00
ce1e997de0 do now write out per-type pair cutoff with kspace enabled 2023-01-06 12:12:13 -05:00
af72a957f8 reorder lines, so syntax highlighting does not get messed up 2023-01-06 10:07:05 -05:00
909bbcfdbd a few more tweaks for consistency 2023-01-06 09:03:00 -05:00
92df9f1c71 update docs 2023-01-06 08:43:44 -05:00