Commit Graph

41715 Commits

Author SHA1 Message Date
a50343077d Merge remote-tracking branch 'github/develop' into python_computes 2025-01-14 00:53:19 -05:00
31d1addfad Merge pull request #4434 from akohlmey/collected-small-changes
Collected small changes and fixes
2025-01-14 00:41:10 -05:00
7c8c8c9d01 update patch for WHAM code 2025-01-13 22:07:44 -05:00
c2868c448e Merge remote-tracking branch 'github/develop' into collected-small-changes 2025-01-13 20:34:14 -05:00
754517dcf6 Merge branch 'collected-small-changes' of github.com:akohlmey/lammps into collected-small-changes 2025-01-13 20:32:01 -05:00
6d7926a026 add missing lammps_expand() function 2025-01-13 19:13:34 -05:00
663f812799 fix inconsistent backquotes 2025-01-13 19:05:04 -05:00
be048fc636 cosmetic changes 2025-01-13 16:01:18 -05:00
ddff545a4c Merge pull request #4431 from Becksteinlab/imd-v3-integration
Interactive Molecular Dynamics [IMD] Version 3 implementation
2025-01-13 15:59:41 -05:00
1d1320f648 Merge remote-tracking branch 'origin/develop' into python_computes 2025-01-13 10:51:33 -07:00
83a73ba0b9 library: add API for compute clearstep and addstep 2025-01-13 10:51:19 -07:00
62aa803d53 order list of removed commands and packages in reverse order of their removal date
also add an (automatic) table of contents simplify finding something
2025-01-13 12:03:31 -05:00
a22c58cd47 add missing update to invoked_bonds in ComputeReaxFFAtomKokkos 2025-01-13 00:17:05 -07:00
686326a999 Merge remote-tracking branch 'github/develop' into collected-small-changes 2025-01-13 01:05:48 -05:00
528770f07d Merge pull request #4344 from lammps/cmake-cpp-std-deprecation
Prepare development branch for requiring C++17 and deprecating GNU make support for some packages
2025-01-13 01:05:07 -05:00
d692a99e4d print PyLammps deprecation warning only once and only from MPI rank 0 2025-01-13 00:04:14 -05:00
dd6fea3fcd Merge branch 'develop' into cmake-cpp-std-deprecation 2025-01-12 23:54:50 -05:00
e20f3ec874 macOS does not like forward declarations for standard C++ classes 2025-01-12 23:50:33 -05:00
f50edb5a38 Merge pull request #4369 from rbberger/deprecate_pylammps
Python interface updates
2025-01-12 23:30:22 -05:00
0aadc4cf46 use mutex to avoid race condition when accessing thermo data during run 2025-01-12 23:27:17 -05:00
78850efaed also warn that KOKKOS will end support for legacy builds in Summer 2025 2025-01-12 21:57:25 -05:00
7c990f8b0e improve wording 2025-01-12 21:56:54 -05:00
2df402c4ff Merge branch 'develop' into cmake-cpp-std-deprecation 2025-01-12 21:47:02 -05:00
a5c3305c42 sync with lammps tutorials paper description 2025-01-12 15:09:42 -05:00
85dec585a6 add tests for lammps_eval() and its python counterpart 2025-01-12 14:49:07 -05:00
dce1231052 add a lammps_eval() function to the C library interface and all derived wrappers 2025-01-12 00:39:18 -05:00
be596cca0c revert setting to run flatpak builder test action only after merges 2025-01-11 19:31:31 -05:00
cf2e800aaa extract bundle from local flatpak repo and try to install it 2025-01-11 19:20:06 -05:00
672faf9fe5 operate on "develop" branch 2025-01-11 19:06:49 -05:00
fb1c090f19 revert to lammps repo 2025-01-11 18:59:22 -05:00
cb2acb633b update workflow 2025-01-11 18:56:59 -05:00
61c541ff92 add github action to build LAMMPS-GUI as flatpak 2025-01-11 18:47:35 -05:00
91dfa41494 Merge remote-tracking branch 'github/develop' into collected-small-changes 2025-01-11 18:17:04 -05:00
a443fe4142 Merge pull request #4433 from farrelljd-iop/angle-mwlc
Angle style MWLC (meltable wormlike chain)
2025-01-11 18:07:36 -05:00
b508229bd2 adapt to LAMMPS programming style 2025-01-11 18:05:16 -05:00
8b2c852121 correct and update the Python Howto 2025-01-11 17:54:44 -05:00
994a631150 add "post no" for single-shot runs 2025-01-11 17:43:05 -05:00
be62d7e04b Merge pull request #4 from akohlmey/imd-v3-updates
Add separator comments
2025-01-11 11:51:08 -07:00
0d85c5c704 add separators 2025-01-11 11:13:47 -05:00
e3f930b33f Merge pull request #1 from akohlmey/angle-mwlc
Small updates to PR #4433
2025-01-11 10:04:12 +08:00
3126482c48 update variable command tests to include whitespace 2025-01-10 20:53:24 -05:00
c4a5906382 stop checking ML-PACE with coverity scan as recent CMake changes break it 2025-01-10 20:12:09 -05:00
4f6c3d12f7 avoid variable definition error: expected 3 arguments but found N 2025-01-10 20:10:53 -05:00
dbc6f77e53 Merge branch 'develop' into deprecate_pylammps 2025-01-10 16:01:06 -07:00
6732013935 apply clang-format 2025-01-10 12:17:29 -05:00
5a0222153a small doc updates and corrections 2025-01-10 12:15:24 -05:00
e858c8a78d Merge branch 'develop' into angle-mwlc 2025-01-10 14:33:50 +08:00
4af328cba1 added contributing author email 2025-01-10 14:08:34 +08:00
5490336543 added a unit test 2025-01-10 14:06:00 +08:00
6bdc58baaf improved the documentation 2025-01-10 14:05:19 +08:00