Commit Graph

23688 Commits

Author SHA1 Message Date
a28db101cc add checks for atom style bond with newton off. add basic test for atom style angle 2020-07-10 17:44:05 -04:00
0825e71a5a whitespace fixes 2020-07-10 13:21:22 -04:00
9b3ffa5487 enables body style rounded/polygon to write to data files 2020-07-10 10:42:36 -06:00
a402de41b7 finalize atom style tester changes 2020-07-10 10:47:30 -04:00
772d75a63a update tester for renaming reset_ids to reset_atom_ids 2020-07-10 10:29:55 -04:00
df63d4147d Merge branch 'reset-molecules' into write-bonus-data 2020-07-10 10:25:08 -04:00
8102045fdb add initial implementation for atom style bond tester 2020-07-10 10:24:54 -04:00
9be30dcf61 add space for terminating NULL byte in MPIIO dump styles.
closes #2225
2020-07-10 09:22:44 -04:00
0c89b517a5 avoid segfaults if fewer than 10 atoms or bounding box length is zero 2020-07-10 08:25:37 -04:00
ab683a03ad start tester for atom style hybrid full ellipsoid 2020-07-10 00:12:57 -04:00
f0af7c686a more death tests to reach 100% coverage 2020-07-09 21:39:55 -04:00
e38f970676 Extended to handle gradgradflag 0/1 options 2020-07-09 19:23:57 -06:00
0d570f5577 Removed a lot of LAMMPS dependence from Descriptor and Model classes 2020-07-09 19:22:41 -06:00
d15264a668 update and expand tester code for reset_mol_ids changes 2020-07-09 21:18:58 -04:00
bade009b6c remove debug code 2020-07-09 20:58:39 -04:00
49780480a8 count total number of styles including aliases, suffixes, and undocumented 2020-07-09 20:52:57 -04:00
9ec77585ea make compress yes the default 2020-07-09 20:46:45 -04:00
9c97ca11fe adjust regex for removed styles to correctly handle command styles 2020-07-09 20:46:31 -04:00
e0e24799c2 simplify formulations a little bit. update example command lines 2020-07-09 19:52:49 -04:00
4a1acffde9 whitespace fixes 2020-07-09 19:36:58 -04:00
9e83279887 minor adjustments to new reset_mol_ids command 2020-07-09 15:40:24 -06:00
f71513f483 update for atom style ellipsoid tester 2020-07-09 11:56:07 -04:00
cc9df9a76d add test module for atom style line 2020-07-09 11:55:52 -04:00
71f13cee9d add missing aspherical particle info to restart files 2020-07-09 11:21:59 -04:00
d7efa8d523 don't do zero byte allocations 2020-07-09 09:26:25 -04:00
0679c01c4b add suppressions for googletest 2020-07-09 09:26:07 -04:00
2b1ca89b57 zero out additionally allocated struct Param storage 2020-07-09 00:31:08 -04:00
ea5015c630 more OpenMPI suppressions 2020-07-09 00:05:18 -04:00
d0cfb0ccae fix initialition issue 2020-07-08 23:49:18 -04:00
e18a11d6bd ewald_order needs to be saved in restart 2020-07-08 23:48:58 -04:00
bebd10712a fix memory leak in pair style sw/intel for good 2020-07-08 22:04:55 -04:00
909bc5a801 fix typo 2020-07-08 21:35:54 -04:00
7ee73e44ad will need ellipsoid field in restart file 2020-07-08 21:18:09 -04:00
4da8ec39de complete testing ellipsoids short of having restart support. 2020-07-08 21:13:28 -04:00
ecc5d3e353 must copy/multiply the numbers of ellipsoids,lines,tris,bodies 2020-07-08 21:12:29 -04:00
7071cff481 avoid memory leak in pair style sw/intel 2020-07-08 20:11:17 -04:00
240c33b503 some more OpenMPI suppressions 2020-07-08 20:10:52 -04:00
f59e391713 avoid leaking empty allocations 2020-07-08 20:10:40 -04:00
2016333cf0 use fmtlib for writing data file coefficients. use mixed coefficients for PairIJCoeffs 2020-07-08 20:09:23 -04:00
7591343702 several fixes to address issues detected by valgrind
- make sure g_ewald_6 is not accessed uninitialized
- fix memory leak
- do not override g_ewald_6 if it is explicitly set
2020-07-08 20:07:54 -04:00
5918d9e6c7 avoid googletest stalling on exit tests when using OpenMPI 2020-07-08 16:31:36 -04:00
bda245339e avoid illegal free() 2020-07-08 16:29:40 -04:00
6cd2c8d117 synchronize exception based and non-exception based code paths 2020-07-08 10:18:01 -04:00
d6665aba99 refactor tester 2020-07-08 10:08:00 -04:00
a98d21f002 Added gradgradflag option to compute mliap 2020-07-07 20:43:40 -06:00
a7369e76cd Added gradgradflag option to compute mliap 2020-07-07 20:42:03 -06:00
06a199f7d0 Added gradgradflag option to compute mliap 2020-07-07 20:28:18 -06:00
a43428fd1b use auto to simplify 2020-07-07 22:19:07 -04:00
cd739c2782 silence compiler warnings 2020-07-07 22:18:52 -04:00
1898fae3f6 simplify 2020-07-07 22:18:37 -04:00