Commit Graph

23688 Commits

Author SHA1 Message Date
5cef86d7b7 add missing MPI call 2020-07-07 21:37:33 -04:00
8fbc8a7148 make more use of fmtlib and replace fprintf with fputs where possible 2020-07-07 21:34:34 -04:00
c0f1472385 use parenthesis to correct precedence 2020-07-07 21:21:32 -04:00
6e3e13f2a8 remove unused variable 2020-07-07 20:53:50 -04:00
9a268da7de remove unneeded typecasts and use fmt::print() instead of fprintf() 2020-07-07 20:53:42 -04:00
4c67822e6b remove unneeded typecasts 2020-07-07 20:27:01 -04:00
e459ee8a58 whitespace fixes 2020-07-07 20:25:59 -04:00
61e3b41908 Merge pull request #2220 from lammps/doc-radians
clarify units for energy terms with angles
2020-07-07 20:13:56 -04:00
6239a579e8 clarify units for energy terms with angles 2020-07-07 15:19:17 -06:00
416467a154 update reset_mol_ids tests for the latest changes 2020-07-07 17:14:54 -04:00
fd95fc98c5 add support for auto offset and singlezero option 2020-07-07 17:14:29 -04:00
d3853af4be add singlezero keyword to compute fragment/atom to give all single non-bonded atoms an ID of 0 2020-07-07 17:13:43 -04:00
12f62583f9 whitespace cleanup 2020-07-07 13:56:50 -04:00
5c59f6af87 Merge branch 'reset-molecules' of github.com:lammps/lammps into reset-molecules 2020-07-07 13:48:25 -04:00
88fc9360c0 resolve conflicts 2020-07-07 11:46:05 -06:00
37d56a6bf6 small cleanup in "deprecated" styles 2020-07-07 13:40:15 -04:00
955bff7c4e add body support, change bonus buf to 1d so can be variable length 2020-07-07 11:34:30 -06:00
94e9b3bc82 rename reset_ids command to reset_atom_ids 2020-07-07 13:32:00 -04:00
7e140399db add (initial) testing for ellipsoid atom style 2020-07-07 12:36:17 -04:00
f16c6f40a7 shape is converted from diameter to radius, so we have to scale back on writing 2020-07-07 12:24:04 -04:00
94d98b6aea no typecasts needed when outputting ubuf integers with fmtlib auto format 2020-07-07 11:40:01 -04:00
bdac1ae3e7 add missing return statements 2020-07-07 11:14:52 -04:00
0944eda391 final details for offset keyword added to reset_mol_ids 2020-07-07 09:07:48 -06:00
7870a89133 added note to doc page 2020-07-07 08:48:24 -06:00
d6ebf3cd46 Merge branch 'reset-molecules' of github.com:lammps/lammps into reset-molecules 2020-07-07 08:38:03 -06:00
fcc6ed3a58 add offset option to reset_mol_ids command 2020-07-07 08:37:48 -06:00
169206790a small tweak 2020-07-07 10:29:43 -04:00
de7f02e48b fix typo 2020-07-07 09:54:16 -04:00
bb9ab025c1 avoid exception when having a command fail due to an empty string 2020-07-07 09:51:39 -04:00
0b1443ed23 add prototypes for exception handling functions 2020-07-07 09:51:02 -04:00
53d20c9ebc add missing symlink 2020-07-06 21:44:39 -04:00
960addcc2c simplify code string/fmtlib code some more 2020-07-06 21:26:49 -04:00
2351f99bef add (incomplete) tester for reset_mol_ids (with a little use of reset_ids, too) 2020-07-06 21:26:11 -04:00
89f0116eab fix communication data conversion bug corrupting bond list 2020-07-06 21:12:55 -04:00
7918919d30 enable write_data for atom styles with bonus data 2020-07-06 17:30:45 -06:00
91a8df1903 Modified files according to request 2020-07-06 20:20:28 +01:00
d37e943e8d refactor tester 2020-07-06 14:12:50 -04:00
836570ec26 update docs 2020-07-06 14:12:37 -04:00
58cd6a160c Merge branch 'master' into reset-molecules 2020-07-06 14:07:48 -04:00
6bf329098e Merge pull request #2216 from ndtrung81/tersoff-gpu
Cleanup and bugfixes for some 3-body pair styles in the GPU package
2020-07-06 13:35:12 -04:00
a1011b606e new reset_mol_ids command 2020-07-06 10:50:34 -06:00
9e96b71703 Merge pull request #2214 from akohlmey/kspace-tests
Add unit tests for some kspace styles and more pair styles
2020-07-06 12:48:09 -04:00
2977a8aa15 Merge pull request #2211 from athomps/compute-mliap
Add compute style mliap to MLIAP package
2020-07-06 12:47:41 -04:00
d1b5b0a168 Merge pull request #2210 from ohenrich/user-cgdna
Update of example input and log files
2020-07-06 12:47:09 -04:00
d768069cfe Merge pull request #2205 from akohlmey/collected-small-changes
Collected small changes for the next patch release
2020-07-06 12:46:16 -04:00
5d0800beef Merge pull request #2204 from rbberger/doc-changes
Documentation Changes: split pair_lj.rst
2020-07-06 12:19:06 -04:00
47d77530e2 updated as requested by @sjplimp 2020-07-06 11:45:16 -04:00
022252dde0 add a paragraph to the output howto explaining how ambiguity is resolved 2020-07-06 11:13:23 -04:00
9ec72d1406 add tests for unknown commands, quit, and reset_timestep 2020-07-06 10:26:04 -04:00
f1abfe2411 avoid segfault when calling the log command without arguments 2020-07-06 10:25:37 -04:00