Commit Graph

23688 Commits

Author SHA1 Message Date
461633e6f6 add unit tests for the suffix, thermo, and timestep commands 2020-07-06 00:11:13 -04:00
83d58ba57d we may not use "suffix on" before a suffix is defined. switching back to a non-hybrid suffix must set suffix2 to NULL 2020-07-06 00:10:43 -04:00
1df59c4b95 change lammps2pdb.pl to only ignore the first line of a data file. whitespace fixes 2020-07-05 23:36:00 -04:00
fe12ea2734 simplify compute creation 2020-07-05 22:46:48 -04:00
134a2e8dd6 use fmtlib and utils::logmesg() in fix msst 2020-07-05 22:37:59 -04:00
759797733d Generalized the variable and function names 2020-07-05 18:58:32 -06:00
a0157f8063 use fmtlib consistently when writing data files 2020-07-05 17:16:58 -04:00
443cc4445e have compute property/atom output shape parameters as diameters not radii consistent with the manual 2020-07-05 16:44:44 -04:00
e2a07acb71 add test for units command 2020-07-05 13:20:23 -04:00
ca24cd5006 simplify tests for failures with a varyadic macro 2020-07-05 12:48:52 -04:00
ebfe7f68af More cleanup 2020-07-05 00:20:28 -05:00
c488e6208d Similar bug fixes to vashishta/gpu 2020-07-04 23:52:32 -05:00
69052fa337 add test for lj/mdf 2020-07-05 00:28:02 -04:00
4dee43cc2d adjust accepted relative error for compiler optimization, make pppm/disp inputs 3x faster 2020-07-05 00:10:47 -04:00
84ded03e24 add tests for some core-shell package pair styles 2020-07-04 23:43:15 -04:00
8f6e454522 single functions for CORESHELL styles are not implemented 2020-07-04 23:40:28 -04:00
585466929f add tests for pppm/disp/tip4p and lj/long/tip4p/long 2020-07-04 23:21:57 -04:00
a314b40aa0 skip testing broken pppm/disp/intel style 2020-07-04 23:07:50 -04:00
6e580bbdb5 add tests for long-range dispersion styles 2020-07-04 22:55:59 -04:00
3f068f7671 partial reformat, fix bug in single function 2020-07-04 22:55:38 -04:00
adacc7f2a4 Similar bug fixes for tersoff/mod/gpu and tersoff/zbl/gpu; some cleanup for sw/gpu 2020-07-04 19:08:55 -05:00
11099bb3f7 silence compiler warnings 2020-07-04 19:23:06 -04:00
2eec6c7f65 exclude MSM tests when compiling with single precision 2020-07-04 18:26:00 -04:00
0461599d0a reduce base precision as required when running tests with pppm and FFT_SINGLE 2020-07-04 18:13:55 -04:00
37b2da637d fix KOKKOS bug for FFT_KISSFFT and FFT_SINGLE 2020-07-04 17:39:07 -04:00
df40ffddf3 add some more tests for pair styles 2020-07-04 17:24:28 -04:00
ffe8e1c0e9 add tests for kspace styles using the pair style tester tool 2020-07-04 17:22:27 -04:00
fcec94579c skip tests for single and extract when testing kspace styles (and pair styles are disabled) 2020-07-04 17:21:51 -04:00
75977367a1 fix memory leak 2020-07-04 17:21:19 -04:00
34cfe07f97 fix energy computation bug in pair style nm/cut/omp 2020-07-04 17:20:47 -04:00
37b2778d4b Remove debug output 2020-07-04 13:34:35 -04:00
cfaa3be898 reduce screen output precision 2020-07-04 08:26:00 -04:00
6f8b8c2f71 more application of fmtlib and utils::logmesg() 2020-07-04 08:25:24 -04:00
9de3077b19 change misleading source code formatting 2020-07-04 05:12:35 -04:00
de815ed6ba must not pass NULL pointer now that we use const std::string references 2020-07-04 04:48:16 -04:00
fac3c70d02 update style 2020-07-04 04:47:38 -04:00
9f733fb305 Removed unused variables 2020-07-04 00:23:34 -05:00
6de020805f Fixed a bug with tersoff/gpu with building the short neighbor list 2020-07-03 23:55:26 -05:00
c37b5e50b1 flag error when trying to compute an average of an empty vector 2020-07-03 22:35:53 -04:00
53415592d2 compute gyration/shape/chunk did not update the number of local array rows 2020-07-03 22:20:28 -04:00
14321d1fa0 add option to compute chunk/atom to access the number of chunks as a global scalar 2020-07-03 22:19:44 -04:00
c3f8644613 Merge branch 'master' into compute-mliap 2020-07-03 14:26:38 -06:00
7fe2df423f Added a package README 2020-07-03 14:22:43 -06:00
8dae5d5fc7 Added special_bonds command to input files 2020-07-03 21:03:24 +01:00
feec9673d8 Fixed html and spelling warnings 2020-07-03 14:03:00 -06:00
9d0aee7426 Added doc page for compute mliap and updated examples 2020-07-03 13:43:51 -06:00
def0cf8a7b Corrected typo 2020-07-03 17:54:31 +01:00
59aa8a5e12 Modified files according to PR 2020-07-03 17:48:49 +01:00
fadfb1b482 Allow changing CMAKE_CXX_EXTENSIONS option to resolve #2079 2020-07-03 12:41:49 -04:00
543371374a typo fix 2020-07-03 11:42:31 -04:00