Commit Graph

18544 Commits

Author SHA1 Message Date
91b98484ad modernize and simplify 2022-08-11 03:45:36 -04:00
aab62d5ed9 add get_dump_list() function 2022-08-11 03:14:59 -04:00
c574ed51b5 modernize and simplify 2022-08-11 03:04:58 -04:00
9bd45e70da simplify and modernize 2022-08-11 03:00:37 -04:00
e8e6beed50 find dump is no longer used 2022-08-11 01:52:42 -04:00
76123d3347 change hyper command to use get_dump_by_id() instead of find_dump() 2022-08-11 01:52:27 -04:00
af5eacfe8c Merge branch 'lammps:develop' into mliappy_unified 2022-08-10 21:58:37 -06:00
631f33feb5 remove redundant calls 2022-08-10 06:57:59 -04:00
5c589dbe20 add -nonbuf / -nb command line flag to disable buffering for screen and logfile 2022-08-09 15:52:47 -04:00
ba7507c9e5 small tweaks 2022-08-09 14:47:58 -04:00
247a2b12b3 use utils::inumeric() instead of atoi() (not for parsing environment variables yet) 2022-08-09 14:30:44 -04:00
3178f05bbf Merge branch 'develop' into collected-small-changes 2022-08-09 14:25:53 -04:00
6873ebb17a LAMMPS code clinic 2022 project 2: Replacing find_compute with get_compute_by_id where possible. 2022-08-09 14:01:49 -04:00
d5170a1703 one more env var for local rank 2022-08-09 17:35:22 +00:00
eb4ce25f03 finish rolling back multiple maps feature 2022-08-09 11:32:29 -04:00
d0ac9426e5 added proper neighbor list cutoff support and segment-segment flag to pair_styles 2022-08-09 14:08:55 +02:00
363b80f85c begin unfeaturing multiple label maps feature 2022-08-09 01:01:31 -04:00
8c8084a027 also remove error list from header file! 2022-08-08 23:23:08 -04:00
4703431768 fix merge commit take3
and actually test it
2022-08-08 23:18:54 -04:00
c005a3d30d fix merge take2 2022-08-08 17:58:58 -04:00
8ac7aac620 fix merge commit 2022-08-08 17:40:28 -04:00
899fa8166a Initial modifications LAMMPS code clinic 2022 2022-08-08 17:31:42 -04:00
f9717049b1 Merge branch 'develop' into type-labels 2022-08-08 17:16:50 -04:00
7e0cad7d9e import fix from upstream 2022-08-08 15:40:19 -04:00
f7b0cb3bd4 AMOEBA induce bugfixes 2022-08-08 15:31:45 -04:00
92dc854ed4 workaround for IBM's XLClang compiler 2022-08-08 15:27:52 -04:00
fb2dd26d45 Merge pull request #3383 from hammondkd/doc-fixes
Documentation fixes
2022-08-08 14:51:38 -04:00
4ac74a4153 add is_os() special function to the variable command 2022-08-06 21:44:03 -04:00
b465d3c86f silence compiler warnings about unused variables 2022-08-06 19:59:37 -04:00
322dc9a4de incorporate bugfixes and some suggestions from PR #3314 2022-08-06 17:43:40 -04:00
ba50889ad5 friction now acting only along segments 2022-08-06 12:14:16 +01:00
485b3e7885 Resolve conflicts with devel branch 2022-08-05 23:30:41 -05:00
5734cce9d8 Updates documentation files to make them more consistent and some typo fixes (round 1) 2022-08-05 23:03:09 -05:00
99582c0f28 Merge pull request #3381 from akohlmey/update-fmtlib
Update embedded fmtlib code to version 9.0.0
2022-08-05 19:51:51 -04:00
e502b9b4fe Merge branch 'update-fmtlib' into shake-with-minimize 2022-08-05 18:14:00 -04:00
dce72e7007 Merge branch 'develop' into shake-with-minimize 2022-08-05 18:13:22 -04:00
caf21d09b4 disallow using fix shake/rattle with KOKKOS during minimization (for now) 2022-08-05 18:12:29 -04:00
691004509a standarize use of static methods with MDI, also plugin args 2022-08-05 16:05:36 -06:00
b5c69e520d Merge pull request #3382 from akohlmey/coverity-fixes
Small updates and bugfixes from static code analysis
2022-08-05 17:55:13 -04:00
5b24e3aa3c Merge pull request #3379 from akohlmey/fix_store_global_peratom
Split internal fix STORE command into fix STORE/GLOBAL and fix STORE/PERATOM
2022-08-05 17:22:48 -04:00
1e099de59c fix initialization typo 2022-08-05 16:38:35 -04:00
7f46b54b79 make "verbose" a proper compile time flag and rename to VERBOSE 2022-08-05 07:45:32 -04:00
4f98e02ae7 avoid division by zero 2022-08-05 07:21:47 -04:00
62cfde2ed2 energy is not an array 2022-08-05 07:21:35 -04:00
3755ec7e35 fix typo 2022-08-05 07:21:11 -04:00
ca1d646b25 offset is not used (by construction of the potential) 2022-08-05 07:20:44 -04:00
18f0a89c85 changed friction model to sigmoid 2022-08-05 10:50:43 +01:00
f448fd4191 ensure liftime of temporary storage 2022-08-05 04:27:58 -04:00
7ebd65ddb7 must catch exceptions inside destructors 2022-08-05 04:27:49 -04:00
968cde7f41 protect against failed lookup of 4th atom 2022-08-05 04:23:06 -04:00