Commit Graph

18544 Commits

Author SHA1 Message Date
084761c665 Merge branch 'develop' into collected-small-changes 2022-08-23 11:53:30 -04:00
50591fae82 Added simple cubic
Added simple cubic as the reference structure
2022-08-23 10:52:41 -05:00
0fbc54a352 Merge branch 'lammps:develop' into fortran-tinkering 2022-08-23 10:15:28 -05:00
f7cf5b6751 Using NEIGHMASK bitmasking for array indices to improve vector gather performance with nextgen compiler. 2022-08-22 15:57:02 -07:00
4b842d52e6 Merge branch 'develop' into type-labels 2022-08-22 10:45:48 -04:00
a0ffcd9811 can use member variables directly 2022-08-21 23:13:25 -04:00
1d25379ad0 synchronize code between DIELECTRIC package and OPENMP versions 2022-08-19 22:30:49 -04:00
d02ff1d70e correct force and energy tally for using full neighbor lists and newton on/off 2022-08-19 16:33:55 -04:00
aa1762b815 bugfix for writing data files with atom style dielectric 2022-08-19 16:18:13 -04:00
7a35ec3527 Merge branch 'lammps:develop' into fortran-tinkering 2022-08-19 08:52:30 -05:00
3ec06dd2c2 improve some error messages in comm, domain and region.cpp 2022-08-19 21:06:00 +08:00
9b039ce00c port MEAM changes for sc lattice to KOKKOS 2022-08-18 23:05:11 -04:00
9e0e0ce310 add support for Bi to MEAM and sc lattices. taken from unfinished PR #3261 2022-08-18 22:50:03 -04:00
e37abc65fe fixed bug in neigh_common with missing self-inclusion of ghost bond atoms 2022-08-18 15:43:28 +02:00
9edb1ee928 improved error messages in input.cpp 2022-08-18 21:14:39 +08:00
93e9382006 Merge branch 'improve-errors' of github.com:crackboy88/lammps into improve-errors 2022-08-18 21:09:27 +08:00
ff9c02f053 improved error messages in pair and input.cpp 2022-08-18 21:08:36 +08:00
c6c8791aeb silence compiler warning 2022-08-18 06:35:01 -04:00
5ff56753da update unit tests for changed error messages 2022-08-17 23:56:22 -04:00
5a10b09005 Merge branch 'improve-errors' of github.com:crackboy88/lammps into improve-errors 2022-08-18 11:23:27 +08:00
9beb60c713 improve error messages in change_box,create_box,domain,input,lattice and neighbor.cpp 2022-08-18 11:22:36 +08:00
1b979be939 Merge pull request #3392 from akohlmey/minimize-neighbor-check
Update test for neighbor list settings during minimization
2022-08-17 20:55:23 -04:00
c3f57037e6 Merge pull request #3391 from akohlmey/refactor-find-xxx
Continued refactoring of internal APIs and their use
2022-08-17 19:37:20 -04:00
f199e45762 Merge pull request #3244 from akohlmey/shake-with-minimize
Enable use of fix shake or fix rattle during minimization
2022-08-17 18:02:40 -04:00
8e4b79dfa8 Merge branch 'refactor-find-xxx' of github.com:akohlmey/lammps into refactor-find-xxx
# Conflicts:
#	src/fix_temp_rescale.cpp
2022-08-17 15:52:02 -04:00
da0bc7e0e9 whitespace 2022-08-17 15:48:47 -04:00
92c9614429 Merge branch 'develop' into refactor-find-xxx
# Conflicts:
#	src/atom.h
#	src/compute_centroid_stress_atom.cpp
2022-08-17 15:48:26 -04:00
20b87d3cd4 Merge pull request #3398 from hammondkd/cite-reminders
Cite reminders
2022-08-17 15:40:35 -04:00
ca4f7b6579 Merge pull request #3399 from akohlmey/lookup-molecules
Refactor access to molecule templates
2022-08-17 15:29:11 -04:00
6e8db537c9 Merge pull request #3400 from vpalkar/unit-tests
Adding unit tests and improving errors in region commands
2022-08-17 13:19:27 -04:00
d8cb79da36 added neigh_mode toggle in mesocnt/viscous 2022-08-17 17:37:51 +02:00
6297d89382 use std::set_union for neigh_common, reduces complexity from o(n^2) to o(n log(n)) 2022-08-17 16:50:16 +02:00
60c9f62268 added input file toggle for neighbor list mode, changed order of arguments and made neighbor list + potential mode arguments optional 2022-08-17 14:52:25 +02:00
8d2fba9197 modernize fixes langevin, press/berendsen, temp/berendsen, temp/rescale 2022-08-17 06:57:38 -04:00
6228ca0a2a added old atom and mol id version of bond_neigh which is a lot faster than topology version 2022-08-17 12:56:28 +02:00
8dbe981a1a modernize fix vector 2022-08-16 22:56:29 -04:00
180e0125ce Improved fix wall/reflect changes 2022-08-17 08:38:43 +08:00
301d379db8 Merge branch 'develop' into refactor-find-xxx 2022-08-16 18:05:33 -04:00
0cac041ad4 avoid segfault when using a custom format with too many format specifiers 2022-08-16 18:03:07 -04:00
d8706ab0cb Merge branch 'unit-tests' of github.com:vpalkar/lammps into unit-tests 2022-08-16 17:03:11 -04:00
5cdc09d9c7 updated region_intersect and region_union to use utils missing cmd args 2022-08-16 16:59:12 -04:00
559ced9869 updated error messages and test for region.cpp 2022-08-16 16:52:19 -04:00
e14997c597 added gl_init in mesocnt/viscous 2022-08-16 16:07:37 +02:00
0b047ba22b improved error messages in fix_addforce,fix_indent,fix_setforce,fix_temp_rescale,fix_wall_reflect and thermo.cpp 2022-08-16 20:33:22 +08:00
0ba0a382c3 Merge branch 'mliappy_unified' of github.com:Boogie3D/lammps into mliappy_unified 2022-08-16 02:36:23 -06:00
7a76a6ee36 Implement python-side unified support, add example 2022-08-16 02:35:31 -06:00
9109ab17c4 Merge branch 'lammps:develop' into fortran-tinkering 2022-08-15 21:12:47 -05:00
3f9daa8608 whitespace fixes 2022-08-15 21:48:01 -04:00
bec86f3f04 added some death tests and more readable code for some error messages 2022-08-15 16:16:48 -04:00
43726c020a Merge pull request #3394 from crackboy88/improve-errors
Improve errors
2022-08-15 15:47:47 -04:00