Commit Graph

18544 Commits

Author SHA1 Message Date
ec069595f7 move compute orientorder/atom because compute coord/atom depends on it 2021-07-27 11:16:40 -04:00
2d488bab6b Merge branch 'master' into collected-small-changes 2021-07-27 11:15:00 -04:00
a4ffffad33 update some version strings for library and python APIs 2021-07-26 23:10:24 -04:00
044fe2e49d step version number strings for the next patch release 2021-07-26 23:09:18 -04:00
458253b452 add python interface with optional numpy support for lammps_gather_bonds()
unit tests are included
2021-07-26 22:40:21 -04:00
fdc75dcf35 add lammps_gather_bonds() function to the C library interface 2021-07-26 18:32:06 -04:00
f34f6b2a27 Merge branch 'master' of https://github.com/wmbrownIntel/lammps into intel-omp-simd 2021-07-26 12:10:37 -07:00
af359df042 Allowing nofdotr for Intel package with newton off. 2021-07-26 12:04:31 -07:00
fefcd0e2af Converting cilk vectorization directives to the openmp standard and changing some more depracated vector intrinsics. Data alignment directives for compiler vectorization are still mostly intel specific. 2021-07-26 11:22:21 -07:00
cca17feb27 silence compiler warnings, remove dead code 2021-07-26 12:31:09 -04:00
5a79429f03 fix up some more package designations and clean up some legacy formatting 2021-07-25 20:23:37 -04:00
18b1e10be8 Merge branch 'master' into package-reorganization2 2021-07-25 19:21:47 -04:00
9d162d865a move pimd to REPLICA 2021-07-25 09:59:56 -04:00
852f18525d complete moving packages and styles around 2021-07-23 18:11:25 -04:00
1bc0a5ca8a Merge branch 'master' of github.com:lammps/lammps into mpich 2021-07-23 10:28:28 -06:00
d2684a2370 Merge branch 'master' into package-reorganization2 2021-07-23 07:41:10 -04:00
c33bead8b1 silence static code analysis warning 2021-07-22 23:26:22 -04:00
ff7f2e78a1 Merge branch 'master' into fix-external-python-support 2021-07-22 23:09:54 -04:00
320f7da91a Merge pull request #2708 from akohlmey/refactor-reaxff-parser
Refactoring and improving REAXFF and QEQ packages
2021-07-22 23:04:09 -04:00
9066495d78 Merge pull request #2838 from kipbarrett/pair_rann
plugged memory leaks in ml-rann package. Resolves [2811]
2021-07-22 22:04:39 -04:00
bf8bde5b03 implement numpy wrapper for setting per-atom energy. virial not yet implemented 2021-07-22 16:59:04 -04:00
d0a654097f Merge branch 'collected-small-changes' into refactor-reaxff-parser 2021-07-22 16:46:07 -04:00
fbf3bcae70 correct automated substition mistake 2021-07-22 16:45:30 -04:00
74c306b32b whitespace 2021-07-22 16:37:06 -04:00
d3e19aa430 Merge branch 'info-create-atoms' of github.com:athomps/lammps into collected-small-changes 2021-07-22 15:00:21 -04:00
d211cea898 bugfix from Dan Bolintineanu. closes #2812 2021-07-22 14:58:33 -04:00
2d93edab1b Added one line of diagnostic output to create_atoms command 2021-07-22 12:22:34 -06:00
bb46dd7d1f update embedded documentation for the library interface functions for accessing fix external 2021-07-22 13:14:49 -04:00
fde6cae56d Add logic for GPU-enabled MPICH 2021-07-22 08:44:32 -06:00
d5ba7b2578 Propagate variable rename 2021-07-22 08:10:42 -06:00
f79b6ac373 recover compilation of KOKKOS package 2021-07-21 23:39:19 -04:00
c59dc079db correctly detect when to retrieve parameters from pair style reaxff 2021-07-21 22:53:18 -04:00
9cf50eb4db add allocation and reduction for per-atom stress with OpenMP 2021-07-21 22:44:18 -04:00
03249dec8b reformat 2021-07-21 22:00:27 -04:00
f8f4af471f general rename of files, styles, and keywords from "reax/c", "reax", or "reaxc" to "reaxff" 2021-07-21 21:52:25 -04:00
6d3a5a6eb9 Port custom changes to atom_kokkos 2021-07-21 17:05:56 -06:00
aa885a9d8d make virial processing use the total global virial 2021-07-21 17:06:21 -04:00
b20fcbd686 implement per-atom stress and nofdotr support for reax/c/omp 2021-07-21 16:00:28 -04:00
d16f751413 Merge branch 'master' into package-reorganization2 2021-07-21 10:23:04 -04:00
cf3bf374fa Merge branch 'master' into refactor-reaxff-parser 2021-07-21 00:30:53 -04:00
9615867600 make contribution to global virial compatible with pf/array mode 2021-07-21 00:25:32 -04:00
6604508b55 Merge branch 'master' into collected-small-changes 2021-07-20 19:39:10 -04:00
96389213ab Merge pull request #2788 from jtclemm/track-contacts
Track properties of pair interactions
2021-07-20 19:38:21 -04:00
2c77adaefb reformat with clang-format 2021-07-20 19:36:44 -04:00
de092206b9 support using LAMMPS_POTENTIALS expansion for (primary) QUIP file and echo file and units 2021-07-20 19:35:00 -04:00
c19d37990d reformat with clang-format 2021-07-20 18:31:52 -04:00
b9cc8c8d24 Merge branch 'master' into collected-small-changes 2021-07-20 18:14:02 -04:00
2718596d65 Merge pull request #2835 from ohenrich/cg-dna
Documentation: CG-DNA package
2021-07-20 18:03:34 -04:00
63794aa698 Merge branch 'master' into track-contacts
# Conflicts:
#	doc/src/Packages_details.rst
#	src/DIELECTRIC/pair_coul_cut_dielectric.h
#	src/MISC/fix_pair_tracker.cpp
#	src/MISC/fix_pair_tracker.h
#	src/MISC/pair_tracker.cpp
#	src/MISC/pair_tracker.h
#	src/pair_tracker.h
2021-07-20 16:19:38 -04:00
acfe590343 whitespace 2021-07-20 16:03:33 -04:00