Commit Graph

762 Commits

Author SHA1 Message Date
bc6e42a610 add more extensive whitespace checking for fortran and unittests 2022-10-04 04:11:39 -04:00
f474b67c7c update swig interface file for recent changes to the library interface 2022-10-03 09:22:02 -04:00
7238a29cb7 improve version tag regexp to match cases with leading blanks 2022-09-26 20:39:46 -04:00
51624fa78d whitespace 2022-09-25 03:55:45 -04:00
3a95a7b973 add utility to detect pending version tags in .. versionadded/changed:: 2022-09-25 03:51:54 -04:00
c235cbee71 sync with lammps-testing and update plumed version consistently. 2022-09-11 01:07:22 -04:00
e9f0f371b8 update prompt variable 2022-09-10 21:05:02 -04:00
b86232ac5b add container definition for almalinux 9 2022-09-10 21:00:14 -04:00
f6dc6ca6e2 make certain there is a blank between Dihedral Coeffs an the type hint 2022-09-06 22:23:38 -04:00
04224e2b53 use sys.path.insert() instead of sys.path.append() to avoid conflicts with other python packages 2022-08-25 07:25:13 -04:00
f5870fdd7d fix syntax error 2022-08-23 09:41:56 -04:00
f18b96e517 handle dump files with extra UNITS or TIME info 2022-08-21 14:01:41 -04:00
1f37087156 python 2/3 portability changes for log class from Pizza.py 2022-08-20 22:03:30 -04:00
057dff375c add unit test for Pizza.py modules 2022-08-20 21:59:24 -04:00
d3101898f1 more python 2/3 porting for using compile()/eval()/exec() 2022-08-20 11:06:02 -04:00
bd5dea0d07 allow selecting a list of timesteps. avoid redundant code 2022-08-20 10:26:48 -04:00
77ad9719b3 apply suggestions from @rbberger for more readable code 2022-08-20 10:25:35 -04:00
20f7e8dcb5 add change suggested by @hammondkd 2022-08-19 11:26:45 -04:00
cec1a197a4 Merge branch 'develop' into collected-small-changes 2022-08-19 11:24:58 -04:00
1e5ca42dfa small update 2022-08-18 21:48:09 -04:00
7b9b056c98 make dump.py files consistent and improve python 2/3 portability 2022-08-18 06:34:49 -04:00
93c7dab931 Fixed filetype.vim 2022-08-17 14:08:38 -07:00
7879a4f837 Fix vim syntax to handle switching color themes
- filetype.vim includes *.in files as lammps input files
- syntax.vim defines the syntax links rather than just creating them
  once
2022-08-17 12:03:10 -07:00
c869a7aac2 update OpenMP suppressions for gcc-12 2022-08-11 23:36:25 -04:00
c8b6b052fc port sorting by time to python 3 while retaining compatibility with 2.7 2022-08-09 16:51:48 -04:00
111caac960 remove references to Numeric module. we only support numpy. 2022-08-09 16:11:09 -04:00
a9829b1e5f enforce null termination of read string 2022-08-05 04:27:58 -04:00
2b126a00b1 update Pizza.py URLs 2022-07-29 19:23:23 -04:00
0dc9b31620 import updated version of tinker2lmp from @sjplimp. fix whitespace. 2022-07-29 19:11:25 -04:00
a393569083 Merge pull request #3343 from yskmiyazaki/style-sdk-update
Change package name CG-SDK to CG-SPICA and add a function type LJ12-5 to the package
2022-07-15 14:54:41 -04:00
c817a495e7 tweak README files 2022-07-11 09:44:23 -06:00
b5e70ebc81 added a FF name SPICA to tools/kate/lammps.xml and tools/moltemplate/README.txt 2022-07-08 18:23:10 +09:00
212048d4cc modernize tinker2lmp scripts so they run with both python2.7 and python3.x 2022-07-05 08:09:24 -04:00
1817b12332 Merge branch 'develop' into amoeba 2022-06-24 17:01:46 -06:00
ad20e54638 fix typos 2022-06-20 23:19:00 -04:00
68a9db0950 fix typos 2022-06-08 17:07:08 -04:00
7769a8e0de update ROCm to version 5.1.3 consistently 2022-06-08 12:18:17 -04:00
55fdb7f12a update GPU container definitions for CUDA 11.7 and singularity -> apptainer 2022-06-08 08:19:54 -04:00
dcbc5256fa additional OpenMP suppressions for newer GCC 2022-06-05 12:37:03 -04:00
f29c45f09a Merge branch 'amoeba' of github.com:lammps/lammps into amoeba 2022-06-01 13:19:59 -06:00
ea3467ab32 benchmarking of replicated systems 2022-06-01 13:19:47 -06:00
97fab45f7e Merge branch 'develop' into amoeba-ak 2022-05-28 05:24:02 -04:00
3ee209d031 update singularity definition for ubuntu22.04LTS
This now has the changes required to include the openkim-api package
2022-05-25 06:35:08 -04:00
e94275391c Merge branch 'develop' into collected-small-changes 2022-05-17 22:10:15 -04:00
44f3ad5620 update singularity image descriptions for newer versions of cuda and rocm 2022-05-15 08:11:50 -04:00
d4ea5ca49e more clang-tidy fixes after re-running it with added settings 2022-05-14 07:18:05 -04:00
6722d3fb00 add simple STL binary to ASCII converter (based on Wikipedia specs) 2022-05-07 16:26:25 -04:00
929734ce45 Merge remote-tracking branch 'github/develop' into amoeba-ak
# Conflicts:
#	doc/src/Commands_pair.rst
#	src/memory.h
2022-04-28 20:08:18 -04:00
8679266db8 add container definitions for Fedora 36 and Ubuntu 22.04LTS 2022-04-25 13:05:43 -04:00
4d1bdb4741 add python tool to detect and remove (if desired) error docs from headers
also document the tools in the manual.
2022-04-23 13:52:12 -04:00