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501ef071c5
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revert to original pitorsion code
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2022-04-21 10:06:53 -06:00 |
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b7a3af7bd1
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update plumed version in containers and install python3-venv
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2022-04-21 12:01:49 -04:00 |
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ee74d9761c
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reorder pitorsion atoms
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2022-04-20 09:41:06 -06:00 |
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f8f2b9542e
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sync with current develop
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2022-04-18 17:29:23 -06:00 |
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353ebb11f1
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add README for tinker2lmp.py
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2022-04-18 16:52:34 -06:00 |
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74f2b67b1a
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no if statement required before delete[]
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2022-04-10 19:55:24 -04:00 |
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39b316729b
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use auto type when assigning from cast or using new
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2022-04-10 18:16:36 -04:00 |
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c54fe7d97d
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small update
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2022-04-10 08:00:47 -04:00 |
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d0af0fa456
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turn off terms for both amoeba and hippo
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2022-04-08 16:51:08 -06:00 |
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fb8074d294
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renormalize line endings. add .gitattributes to configure them explicitly
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2022-03-17 18:21:31 -04:00 |
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4be3da727a
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include tools/python in whitespace check
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2022-03-16 13:22:39 -04:00 |
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bb4268518b
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make python 2 compatible
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2022-03-16 12:56:19 -04:00 |
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72425f1874
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add '#' to make the list of headers a comment
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2022-03-16 12:55:53 -04:00 |
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b774464156
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whitespace
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2022-03-16 12:55:25 -04:00 |
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0fd02ffd10
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Merge pull request #3153 from aliehlen/log-pizza-updates
Log pizza updates
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2022-03-16 11:50:31 -04:00 |
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7a32832b88
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bug fixes
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2022-03-15 09:35:42 -06:00 |
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1dda3055c2
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enable tinker2lmp.py to generate bitorsions
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2022-03-14 14:31:03 -06:00 |
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7343f6e5b8
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writing column names is optional
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2022-03-10 15:23:21 -06:00 |
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bbe065e649
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initial version of fix pitorsion
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2022-03-09 15:37:19 -07:00 |
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844ea0ab8e
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UB testing
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2022-03-08 15:37:16 -07:00 |
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64becd5642
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move UB bonds to angle amoeba
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2022-03-08 13:28:11 -07:00 |
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7087dfc019
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bug fix for enumerating Urey-Bradley bonds
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2022-03-07 11:02:44 -07:00 |
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60b7da84db
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add comment of something to check
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2022-03-04 13:56:55 -07:00 |
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85d4312703
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add pitorsions to tinker2lmp.py
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2022-03-04 13:52:04 -07:00 |
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1f456a447c
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add support for Urey-Bradley H-H bonds
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2022-03-03 09:23:33 -07:00 |
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3e01fa49dd
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emulate using '-i' command line flag
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2022-02-25 18:34:45 -05:00 |
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257805d325
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make prompt name consistent
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2022-02-25 09:32:41 -05:00 |
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59e2b819e0
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need python3-venv package for updated make install-python
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2022-02-25 08:44:15 -05:00 |
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2d7375798f
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more python 3 compatibility
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2022-02-23 13:27:33 -05:00 |
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5594868ef2
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retain compatibility with python2
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2022-02-23 10:18:02 -05:00 |
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035a16d6d8
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remove interactive mode for log plotting
this doesn't work in linux
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2022-02-22 10:51:58 -06:00 |
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7d8f7855d5
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add writing column names in logfile
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2022-02-22 10:51:58 -06:00 |
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5c297fa4d1
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update log pizza.py files to python 3
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2022-02-22 10:51:58 -06:00 |
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e3222a4bd0
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Merge pull request #3126 from Bibobu/EAM_alloy_python_script
Added Python version of Zhou04_create_v2.f in eam_database
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2022-02-14 19:48:51 -05:00 |
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9a200c9b79
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small tweaks
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2022-02-14 18:07:29 -05:00 |
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c46dd3675a
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add Cr parameters to python database file
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2022-02-14 18:06:48 -05:00 |
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b0c0251154
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delete unwanted files
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2022-02-14 18:06:24 -05:00 |
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c65dbd338b
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change create_eam.py so it can be called as a function from another script
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2022-02-14 17:44:33 -05:00 |
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8431d72d75
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Added a test directory to tools/eam_database
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2022-02-14 21:29:51 +01:00 |
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3bc91386a0
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apply include statement updates suggested by running IWYU
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2022-02-13 19:39:15 -05:00 |
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4343e8194c
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update README file
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2022-02-12 10:20:49 -05:00 |
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096ea21dd9
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correct potential file output header (must have 3 comment lines)
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2022-02-12 10:14:09 -05:00 |
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8808b11d26
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must write out 3 lines of comment in fortran code. sync output style with python
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2022-02-12 10:04:24 -05:00 |
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2fdadcfeb6
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include UNITS: metadata tag
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2022-02-12 10:01:20 -05:00 |
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0113346e54
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apply some pylint recommendations
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2022-02-12 10:01:01 -05:00 |
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3cca41b72e
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print help without arguments. clarify help message and argument names text
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2022-02-12 09:38:05 -05:00 |
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69d3b1ebf3
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output files are now named .eam.alloy
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2022-02-12 09:37:23 -05:00 |
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0f5fbf1c42
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update citation info format
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2022-02-12 09:36:53 -05:00 |
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06d4bb3faf
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set date dynamically
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2022-02-12 09:33:37 -05:00 |
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e9b11e3673
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Added Python version of Zhou04_create_v2.f: create_eam.py and eamDatabase.py in tools/eam_database
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2022-02-12 12:42:54 +01:00 |
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