Commit Graph

32822 Commits

Author SHA1 Message Date
a02ab6eaa1 avoid memory corruption when using mliap unified with ghostneigh_flag == 1 2022-09-24 15:32:25 -04:00
ef8090fdd1 flag *unified* keyword as newly added in the next patch release 2022-09-24 15:31:47 -04:00
bab115e993 apply C++11 virtual/override conventions 2022-09-24 14:48:31 -04:00
1885f7e42d delete redundant memory deallocation 2022-09-24 14:48:13 -04:00
1ad782c050 initialize and (conditionally) free cutghost pointer in base class 2022-09-24 14:47:41 -04:00
058e49696a Added "New in version TBD" to new functions 2022-09-24 12:12:24 -05:00
26e269aacd continued ork on extract_compute unit tests 2022-09-24 12:04:27 -05:00
b37c145352 convert URLs to https where possible, check URLs for bit rot and update or remove 2022-09-24 08:02:18 -04:00
a0caf34d71 update sjplimp's email and homepage 2022-09-24 05:02:53 -04:00
e469c98e9d apply clang-format 2022-09-24 04:39:02 -04:00
a31977ca4c fix typo 2022-09-24 04:24:43 -04:00
46820a90c5 modernize and improve error message handling 2022-09-24 04:12:54 -04:00
caa80ef344 use upper case LAMMPS as the name of the package consistently 2022-09-24 03:45:23 -04:00
5ddb0aeb16 cosmetic changes 2022-09-24 03:44:19 -04:00
f1756eeeee update unified LJ Ar example to include creating the pickle in the input 2022-09-24 03:33:19 -04:00
c7b24cb1e3 always accept "mliappy" and "unified" keywords, but print suitable error if not supported 2022-09-24 03:32:35 -04:00
c581fca39a Merge branch 'develop' into mliappy_unified 2022-09-24 03:07:31 -04:00
49a3be17cb c-library functions should be always present, documented, and lowercase 2022-09-24 03:07:24 -04:00
69627eee8d Merged with fortran-tinkering 2022-09-23 22:11:24 -05:00
8ad478697e Remove trailing whitespace 2022-09-23 17:20:27 -06:00
a3326841ad Add MLIAP NumPy Ta06A example 2022-09-23 17:01:59 -06:00
a94cfe175b add c/python unit tests for lammps_error() 2022-09-23 18:59:29 -04:00
597540dfb4 Merge branch 'mliappy_unified' of github.com:Boogie3D/lammps into mliappy_unified 2022-09-23 16:51:29 -06:00
5aad045686 Improve incompatible python interpreter warning 2022-09-23 16:51:20 -06:00
9eee1bbb5f Fix MLIAP Unified LJ example logs 2022-09-23 16:04:15 -06:00
cc0fc01d1c Implemented extract_compute and started writing unit test for it 2022-09-23 16:23:51 -05:00
86d1aacf7e add function to dispatch LAMMPS errors to library interfaces 2022-09-23 16:28:15 -04:00
0f2a7d3f33 Merge branch 'develop' into fortran-tinkering 2022-09-23 12:41:39 -04:00
d9e2be4b75 updates to the fortran module docs to make it more consistent, fix links, add example similar to C library docs 2022-09-23 12:41:31 -04:00
2a14397318 fix broken link 2022-09-23 11:10:06 -04:00
71c48762fb correct inconsistent spelling of name 2022-09-23 10:33:44 -04:00
6532640362 spelling 2022-09-23 10:23:32 -04:00
ac0080f2df Reintroduced some stashed doc edits 2022-09-23 07:20:49 -05:00
8183a4dfbb change logic to make coverity scan happy 2022-09-23 06:12:56 -04:00
c3e7f8f25a remove unused NEWTON_PAIR template argument 2022-09-23 06:01:25 -04:00
820fab454b style changes 2022-09-23 05:47:41 -04:00
5f5397f61b Added unit tests for x and v 2022-09-22 22:23:31 -05:00
ea8f08c295 update "make install" for cmake to correctly install LAMMPS python module. 2022-09-22 22:44:45 -04:00
ae4404201f Forgot to add the unit test files to the commit.... 2022-09-22 19:55:10 -05:00
43aabc7985 Update comments and documentation 2022-09-22 18:29:45 -06:00
aff5200ded Implemented extract_atom, updated docs, added some unit tests 2022-09-22 19:16:15 -05:00
e230a3bb5b Merge pull request #3450 from akohlmey/collected-small-changes
Collected small changes and fixes
2022-09-22 17:24:08 -04:00
3c5e446165 avoid null pointer dereference 2022-09-22 13:21:54 -04:00
24fd02725c make operator precedence explicit 2022-09-22 13:21:33 -04:00
96f04237c1 fix memory leak and avoid uninitialized data access 2022-09-22 13:16:38 -04:00
4f0caca9d8 make sure data is initialized 2022-09-22 13:05:32 -04:00
659ac90537 Merge branch 'develop' into collected-small-changes 2022-09-22 12:25:30 -04:00
422042bf66 Merge pull request #3455 from lammps/fix-pair-min-tweak
Adjust fix pair to work better with minimization
2022-09-22 12:25:04 -04:00
4a072d10db make sure array is initialized 2022-09-22 12:24:09 -04:00
e3729e51e8 remove unused method, modernize errors and access to molecule class, reformat 2022-09-22 12:23:52 -04:00