Commit Graph

34393 Commits

Author SHA1 Message Date
c9ae41246d Ran the four make commands in the src folder: make fix-whitespace; make fix-homepage; make fix-errordocs; make fix-permissions 2023-01-15 16:05:36 -06:00
d5b878d047 Updated the doc page of amoeba/hippo styles to indicate that their gpu versions are supported 2023-01-15 15:56:40 -06:00
67574601ed Cleaned up commented-out and debugging stuffs, removed irrelevant changes to lj/cut/dipole/cut, reverted unwanted changes in the PPPMGPU destructor, fixed unresolved conflicts in tinker.py, updated the userbinsize==0 case in atom.cpp and using Force::pair_match() as suggested. Internal timing stuffs need work. 2023-01-15 15:41:54 -06:00
c21f2faa1f Cleaned up debug statements and unused sections in the amoeba and hippo gpu styles 2023-01-14 20:02:36 -06:00
03e48f2658 Fixed memory leak in hippo/gpu 2023-01-14 19:51:42 -06:00
212da7f109 Merge branch 'develop' into amoeba-gpu 2023-01-14 18:36:26 -06:00
24fec6bdbd Merge pull request #3592 from akohlmey/collected-small-changes
Collected small changes and fixes for the next patch release
2023-01-14 00:44:48 -05:00
c415385ab4 Merge pull request #3594 from akohlmey/abc-fire-alternative
Alternative implementation of ABC-FIRE
2023-01-13 21:28:25 -05:00
acb59c8b74 Merge pull request #3597 from lammps/dump-grid-dimension
Add ITEM: DIMENSION to dump grid output
2023-01-13 17:42:35 -05:00
882f155d94 whitespace 2023-01-13 14:51:40 -05:00
50cc866081 sync with stable branch 2023-01-13 14:47:51 -05:00
651e95654c more details on dump snapshot header values 2023-01-13 12:34:05 -07:00
652a8804e2 enable and apply clang-format 2023-01-13 12:31:47 -05:00
9169d88090 add ITEM: DIMENSION to dump grid src/doc 2023-01-13 09:42:11 -07:00
8e138161af add more thorough checks on Fortran and MPI support for Fortran.
also works around issue with GNU Fortran 12 and later
2023-01-13 11:02:24 -05:00
a1f5d8420a compile test for coupling to the LAMMPS library via fortran, check if it runs 2023-01-13 06:26:06 -05:00
aa2d2509d8 plug memory leaks in coupling examples 2023-01-13 05:40:28 -05:00
b03e9609ce synchronize API with library.h, zero struct on allocation, determine exception support at runtime. 2023-01-13 05:30:49 -05:00
59a9161435 add bugfix for plugin wrapper of library interface from Stan 2023-01-13 03:54:22 -05:00
a155ef8695 add MEAM example to fire minimizer examples 2023-01-12 23:26:30 -05:00
692bdaea37 reorder 2023-01-12 18:28:01 -05:00
a68fca43e5 make error message consistent with name of executable 2023-01-12 12:09:59 -05:00
8d42212f38 remove bogus tags 2023-01-12 05:33:51 -05:00
34e54dbfc9 grammar 2023-01-11 22:30:06 -05:00
27961907ad small doc tweaks 2023-01-11 21:23:57 -05:00
00908fef17 gather Kokkos device/arch settings and print in summary 2023-01-11 18:14:58 -05:00
0104824727 remove min style fire/old 2023-01-11 07:33:16 -05:00
ee77055e49 make consistent 2023-01-11 06:46:02 -05:00
91cfe90aa3 add missing tracking of updated file lists from globbing in the LEPTON package 2023-01-11 01:09:54 -05:00
5dd8a33abe improve error message 2023-01-10 21:07:45 -05:00
f5a8a0c398 update examples. add abcfire variants 2023-01-10 16:28:18 -05:00
8800adf1cd fully integrate ABC-FIRE and make it a min_modify option 2023-01-10 16:20:00 -05:00
f42fa9c565 remove references to long obsolete .d dependency files 2023-01-10 12:32:01 -05:00
58097b2e5f fold abcfire code into MinFire class 2023-01-09 20:49:57 -05:00
49792fd984 improve error checking and error messages when a pair style was use multiple times 2023-01-09 19:55:43 -05:00
b3396f109b Merge pull request #3589 from akohlmey/collected-small-fixes
Collected small fixes and changes
2023-01-09 19:07:03 -05:00
f3b14bc39c Merge pull request #3576 from ndtrung81/dielectric-updates
Updates to the DIELECTRIC package
2023-01-09 16:25:24 -05:00
f88bfbb6af use enumerators for symbolic constants to flag integrator and linesearch styles
also a small update to error, warning, and info output
2023-01-09 13:32:04 -05:00
d907baac83 sync docs with fire minimizer code features 2023-01-09 13:30:29 -05:00
36fbf05ac0 Merge pull request #3590 from akohlmey/lepton-zbl
Add a custom zbl() function to lepton pair styles
2023-01-09 11:30:38 -05:00
0d815a09a7 add unit test for custom zbl() function 2023-01-09 07:20:44 -05:00
8e2f2922d6 throw exception in case an unexpected derivative is requested 2023-01-09 07:16:16 -05:00
f34fd96185 Fixed typos in compute efield/atom and bug with set charge for atom_style dieletric 2023-01-09 00:26:30 -06:00
954f6ed1f3 fix double word 2023-01-08 15:51:22 -05:00
52b84c9776 use_qscaled must be initialized in the constructor 2023-01-08 14:07:46 -05:00
4ab1ce5d7d consistently use Kokkos:: namespace prefix when calling deep_copy() 2023-01-08 11:07:47 -05:00
caa7940b34 fix typo 2023-01-08 11:03:32 -05:00
f832a7ed46 Merge branch 'develop' into dielectric-updates 2023-01-08 10:52:30 -05:00
32a6b70b01 whitespace 2023-01-08 10:52:23 -05:00
5e837d23cc make sure member pointer is initialized and apply clang-format 2023-01-08 04:43:43 -05:00