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lammps/src
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Axel Kohlmeyer f0b3b20653 add a write permission check before opening a pipe for compressed writes
2025-03-26 23:09:39 -04:00
..
ADIOS
flag some more compatible time and out-of-bounds errors with errorurl()s
2025-03-20 06:16:59 -04:00
AMOEBA
Merge pull request #4456 from akohlmey/add-error-explanations
2025-03-14 20:18:34 -04:00
ASPHERE
convert remaining errors to print coeff status
2025-03-16 06:03:23 -04:00
ATC
add package removal warnings and GNU make deprecation warnings
2024-09-18 15:43:56 -04:00
AWPMD
update all simple coeff messages
2025-02-03 12:13:52 -07:00
BOCS
consolidate errors #6 and #7 plus handle non-numeric box. add missing entries.
2025-03-17 11:40:36 -04:00
BODY
update all simple coeff messages
2025-02-03 12:13:52 -07:00
BPM
Merge branch 'develop' into errors-more-cleanup
2025-03-23 16:01:00 -04:00
BROWNIAN
fix minor issues
2025-01-16 21:22:41 -05:00
CG-DNA
add url to bond_coeff messages
2025-02-10 09:36:22 -07:00
CG-SPICA
add url to angle_coeff messages
2025-02-10 09:49:53 -07:00
CLASS2
add url to improper_coeff messages
2025-02-10 09:59:04 -07:00
COLLOID
update all simple coeff messages
2025-02-03 12:13:52 -07:00
COLVARS
Merge branch 'develop' into cmake-cpp-std-deprecation
2025-01-12 21:47:02 -05:00
COMPRESS
deprecate COMPRESS and VTK package from GNU build
2024-09-18 16:22:34 -04:00
CORESHELL
more constant cleanups
2024-02-06 00:28:58 -05:00
DEPEND
…
DIELECTRIC
add explanations for "before/after simulation box is defined" errors
2025-03-21 20:30:47 -04:00
DIFFRACTION
small corrections in the DIFFRACTION package, mostly cosmetic
2024-09-02 06:26:27 -04:00
DIPOLE
add url to angle_coeff messages
2025-02-10 09:49:53 -07:00
DPD-BASIC
Merge pull request #4501 from lammps/errors-more-cleanup
2025-03-25 17:52:08 -04:00
DPD-MESO
fix up uses of errorurl(21)
2025-03-20 23:12:21 -04:00
DPD-REACT
also print pair coeff setflag status when not all pair coeffs are set
2025-03-15 21:16:07 -04:00
DPD-SMOOTH
update all simple coeff messages
2025-02-03 12:13:52 -07:00
DRUDE
consolidate errors #6 and #7 plus handle non-numeric box. add missing entries.
2025-03-17 11:40:36 -04:00
EFF
update all simple coeff messages
2025-02-03 12:13:52 -07:00
ELECTRODE
replace fmt::print() with utils::print()
2025-01-23 00:11:31 -05:00
EXTRA-COMMAND
remove preliminary (and broken) code for creating planes and update docs, so the PR can be merged
2025-02-13 15:32:36 -05:00
EXTRA-COMPUTE
remove argument expansion since it would take only the first expanded argument only.
2025-03-26 04:11:51 -04:00
EXTRA-DUMP
replace fmt::print() with utils::print()
2025-01-23 00:11:31 -05:00
EXTRA-FIX
plug memory leaks
2025-03-26 04:16:54 -04:00
EXTRA-MOLECULE
fix up uses of errorurl(21)
2025-03-20 23:12:21 -04:00
EXTRA-PAIR
convert remaining errors to print coeff status
2025-03-16 06:03:23 -04:00
FEP
also print pair coeff setflag status when not all pair coeffs are set
2025-03-15 21:16:07 -04:00
fmt
Revert "apply workarounds for (probably bogus) warnings or errors from nvcc"
2025-01-23 12:19:24 -05:00
GPU
consolidate calls to utils::errorurl() with corresponding error class calls.
2025-03-19 02:23:10 -04:00
GRANULAR
Merge branch 'develop' into add-error-explanations
2025-03-12 11:39:13 -04:00
H5MD
replace atoi() with std::stoi()
2024-07-30 21:50:44 -04:00
INTEL
consolidate calls to utils::errorurl() with corresponding error class calls.
2025-03-19 02:23:10 -04:00
INTERLAYER
also print pair coeff setflag status when not all pair coeffs are set
2025-03-15 21:16:07 -04:00
KIM
add explanations for "before/after simulation box is defined" errors
2025-03-21 20:30:47 -04:00
KOKKOS
consolidate calls to utils::errorurl() with corresponding error class calls.
2025-03-19 02:23:10 -04:00
KSPACE
consolidate calls to utils::errorurl() with corresponding error class calls.
2025-03-19 02:23:10 -04:00
LATBOLTZ
replace fmt::print() with utils::print()
2025-01-23 00:11:31 -05:00
LEPTON
also print pair coeff setflag status when not all pair coeffs are set
2025-03-15 21:16:07 -04:00
MACHDYN
also print pair coeff setflag status when not all pair coeffs are set
2025-03-15 21:16:07 -04:00
MAKE
Merge branch 'develop' into cmake-cpp-std-deprecation
2025-01-12 21:47:02 -05:00
MANIFOLD
validate that a non-temperature compute has not been replaced without fix_modify
2024-12-23 20:24:24 -05:00
MANYBODY
also print pair coeff setflag status when not all pair coeffs are set
2025-03-15 21:16:07 -04:00
MC
update all simple coeff messages
2025-02-03 12:13:52 -07:00
MDI
make compatible with -DLAMMPS_BIGBIG
2024-08-21 22:32:29 -04:00
MEAM
update all simple coeff messages
2025-02-03 12:13:52 -07:00
MESONT
add extract() function to angle_mesocnt.cpp
2024-10-14 11:30:20 +02:00
MGPT
update all simple coeff messages
2025-02-03 12:13:52 -07:00
MISC
fix up uses of errorurl(21)
2025-03-20 23:12:21 -04:00
ML-HDNNP
update all simple coeff messages
2025-02-03 12:13:52 -07:00
ML-IAP
Merge remote-tracking branch 'github/develop' into collected-small-fixes
2025-03-25 17:53:23 -04:00
ML-PACE
also print pair coeff setflag status when not all pair coeffs are set
2025-03-15 21:16:07 -04:00
ML-POD
also print pair coeff setflag status when not all pair coeffs are set
2025-03-15 21:16:07 -04:00
ML-QUIP
update all simple coeff messages
2025-02-03 12:13:52 -07:00
ML-RANN
merge 'develop'
2025-02-13 17:13:28 -05:00
ML-SNAP
also print pair coeff setflag status when not all pair coeffs are set
2025-03-15 21:16:07 -04:00
ML-UF3
get rid of some non-ASCII characters
2024-09-25 22:01:42 -04:00
MOFFF
also print pair coeff setflag status when not all pair coeffs are set
2025-03-15 21:16:07 -04:00
MOLECULE
Merge pull request #4456 from akohlmey/add-error-explanations
2025-03-14 20:18:34 -04:00
MOLFILE
replace atoi() with std::stoi()
2024-07-30 21:50:44 -04:00
NETCDF
MPI bugfix for dump netcdf from Paul Coffman
2025-01-08 21:18:03 -05:00
OPENMP
update a bunch more error messages
2025-03-19 17:17:47 -04:00
OPT
Merge branch 'develop' into quick-regression
2024-08-31 23:16:27 -04:00
ORIENT
replace defines with static constexpr declarations
2024-01-21 15:53:35 -05:00
PERI
also print pair coeff setflag status when not all pair coeffs are set
2025-03-15 21:16:07 -04:00
PHONON
add explanations for "before/after simulation box is defined" errors
2025-03-21 20:30:47 -04:00
PLUGIN
…
PLUMED
Merge branch 'develop' into cmake-cpp-std-deprecation
2025-01-12 21:47:02 -05:00
POEMS
add package removal warnings and GNU make deprecation warnings
2024-09-18 15:43:56 -04:00
PTM
cstdbool header is deprecated and no longer needed with recent compilers
2025-01-31 22:01:06 -05:00
PYTHON
Merge branch 'develop' into add-error-explanations
2025-02-17 15:39:22 -05:00
QEQ
add explanations for "before/after simulation box is defined" errors
2025-03-21 20:30:47 -04:00
QMMM
…
QTB
replace fmt::print() with utils::print()
2025-01-23 00:11:31 -05:00
REACTION
revert changes requested by @akohlmey
2024-10-03 11:39:24 -04:00
REAXFF
add support for writing one file per timestep with '*' wildcard
2025-03-26 22:44:35 -04:00
REPLICA
add explanations for "before/after simulation box is defined" errors
2025-03-21 20:30:47 -04:00
RHEO
fix up uses of errorurl(21)
2025-03-20 23:12:21 -04:00
RIGID
consolidate calls to utils::errorurl() with corresponding error class calls.
2025-03-19 02:23:10 -04:00
SCAFACOS
…
SHOCK
make coverity scan happy
2025-01-18 11:54:48 -05:00
SMTBQ
also print pair coeff setflag status when not all pair coeffs are set
2025-03-15 21:16:07 -04:00
SPH
fix up uses of errorurl(21)
2025-03-20 23:12:21 -04:00
SPIN
add explanations for "before/after simulation box is defined" errors
2025-03-21 20:30:47 -04:00
SRD
replace fmt::print() with utils::print()
2025-01-23 00:11:31 -05:00
STUBS
fix typo
2025-03-07 12:05:38 -05:00
TALLY
add errorurl(11) with explanation to "Energy/Stess was not tallied by pair style"
2025-03-21 19:57:57 -04:00
UEF
add some calls to utils::errorurl(22)
2025-02-18 00:05:12 -05:00
VORONOI
fix some issues flagged by coverity scan
2025-01-14 22:23:24 -05:00
VTK
add some more missing errorurl() calls and error pointers
2025-03-20 22:45:01 -04:00
YAFF
add url to improper_coeff messages
2025-02-10 09:59:04 -07:00
.clang-format
…
.gitignore
update .gitignore
2025-03-13 03:57:41 -04:00
accelerator_kokkos.h
Fix issues in KOKKOS package
2024-12-03 16:20:34 -08:00
accelerator_omp.h
…
angle_deprecated.cpp
…
angle_deprecated.h
…
angle_hybrid.cpp
support angle style hybrid with fix adapt
2024-09-16 21:21:20 -04:00
angle_hybrid.h
support angle style hybrid with fix adapt
2024-09-16 21:21:20 -04:00
angle_write.cpp
add explanations for "before/after simulation box is defined" errors
2025-03-21 20:30:47 -04:00
angle_write.h
apply clang-format
2024-10-06 00:25:53 -04:00
angle_zero.cpp
add url to angle_coeff messages
2025-02-10 09:49:53 -07:00
angle_zero.h
…
angle.cpp
convert remaining errors to print coeff status
2025-03-16 06:03:23 -04:00
angle.h
apply clang-format
2024-10-06 00:25:53 -04:00
arg_info.cpp
…
arg_info.h
…
atom_map.cpp
some more define to static constexpr conversions
2024-01-24 21:14:19 -05:00
atom_map.h
…
atom_masks.h
…
atom_vec_atomic.cpp
…
atom_vec_atomic.h
…
atom_vec_body.cpp
…
atom_vec_body.h
add missing override keywords
2024-02-06 19:36:35 -05:00
atom_vec_charge.cpp
…
atom_vec_charge.h
…
atom_vec_ellipsoid.cpp
replace fmt::print() with utils::print()
2025-01-23 00:11:31 -05:00
atom_vec_ellipsoid.h
add missing override keywords
2024-02-06 19:36:35 -05:00
atom_vec_hybrid.cpp
…
atom_vec_hybrid.h
…
atom_vec_line.cpp
replace fmt::print() with utils::print()
2025-01-23 00:11:31 -05:00
atom_vec_line.h
…
atom_vec_sphere.cpp
include-what-you-use updates
2024-02-27 23:42:24 -05:00
atom_vec_sphere.h
…
atom_vec_tri.cpp
replace fmt::print() with utils::print()
2025-01-23 00:11:31 -05:00
atom_vec_tri.h
…
atom_vec.cpp
replace fmt::print() with utils::print()
2025-01-23 00:11:31 -05:00
atom_vec.h
apply clang-format
2024-07-22 23:58:10 -04:00
atom.cpp
Merge pull request #4501 from lammps/errors-more-cleanup
2025-03-25 17:52:08 -04:00
atom.h
first try at implementing lammps_extract_atom_size()
2024-08-30 22:50:42 -04:00
balance.cpp
add explanations for "before/after simulation box is defined" errors
2025-03-21 20:30:47 -04:00
balance.h
…
body.cpp
…
body.h
…
bond_deprecated.cpp
…
bond_deprecated.h
…
bond_hybrid.cpp
apply clang-format
2024-10-05 22:25:07 -04:00
bond_hybrid.h
add support for bond style hybrid to fix adapt
2024-09-16 20:49:44 -04:00
bond_zero.cpp
add url to bond_coeff messages
2025-02-10 09:36:22 -07:00
bond_zero.h
…
bond.cpp
convert remaining errors to print coeff status
2025-03-16 06:03:23 -04:00
bond.h
apply clang-format
2024-10-06 00:25:53 -04:00
change_box.cpp
Merge pull request #4501 from lammps/errors-more-cleanup
2025-03-25 17:52:08 -04:00
change_box.h
…
citeme.cpp
work around the requirement that fmt::format() needs a constexpr string as format
2025-01-23 00:13:27 -05:00
citeme.h
…
comm_brick.cpp
Merge branch 'develop' into rheo
2024-10-30 08:24:54 -06:00
comm_brick.h
Merge branch 'develop' into rheo
2024-10-30 08:24:54 -06:00
comm_tiled.cpp
Fix memory corruption in comm_tiled_kokkos
2024-12-18 15:59:42 -07:00
comm_tiled.h
Fix memory corruption in comm_tiled_kokkos
2024-12-18 15:59:42 -07:00
comm.cpp
expand deprecation warnings
2025-02-01 22:37:52 -05:00
comm.h
Merge branch 'develop' into rheo
2024-10-30 08:24:54 -06:00
command.h
must initialize copymode in base class
2024-11-15 06:24:29 -05:00
compute_aggregate_atom.cpp
simplify logic for checking whether occasional neight list needs to be rebuilt
2024-07-22 14:11:04 -06:00
compute_aggregate_atom.h
…
compute_angle_local.cpp
fix typos
2024-10-23 21:07:39 -04:00
compute_angle_local.h
…
compute_angle.cpp
add some calls to utils::errorurl(22)
2025-02-18 00:05:12 -05:00
compute_angle.h
…
compute_angmom_chunk.cpp
…
compute_angmom_chunk.h
…
compute_bond_local.cpp
fix typos
2024-10-23 21:07:39 -04:00
compute_bond_local.h
…
compute_bond.cpp
add some calls to utils::errorurl(22)
2025-02-18 00:05:12 -05:00
compute_bond.h
…
compute_centro_atom.cpp
…
compute_centro_atom.h
…
compute_centroid_stress_atom.cpp
add some calls to utils::errorurl(22)
2025-02-18 00:05:12 -05:00
compute_centroid_stress_atom.h
…
compute_chunk_atom.cpp
more error reporting updates
2025-03-20 12:31:08 -04:00
compute_chunk_atom.h
…
compute_chunk_spread_atom.cpp
plug memory leaks
2025-03-26 04:16:54 -04:00
compute_chunk_spread_atom.h
update a bunch more error messages
2025-03-19 17:17:47 -04:00
compute_chunk.cpp
…
compute_chunk.h
apply clang-format
2024-10-06 00:25:53 -04:00
compute_cluster_atom.cpp
simplify logic for checking whether occasional neight list needs to be rebuilt
2024-07-22 14:11:04 -06:00
compute_cluster_atom.h
…
compute_cna_atom.cpp
include-what-you-use updates
2024-02-27 23:42:24 -05:00
compute_cna_atom.h
…
compute_com_chunk.cpp
…
compute_com_chunk.h
…
compute_com.cpp
…
compute_com.h
…
compute_coord_atom.cpp
use new bitmap accessor function and simplify code
2024-06-01 17:57:31 -04:00
compute_coord_atom.h
use new bitmap accessor function and simplify code
2024-06-01 17:57:31 -04:00
compute_count_type.cpp
always return integers for counts
2024-04-18 11:00:02 -04:00
compute_count_type.h
…
compute_deprecated.cpp
…
compute_deprecated.h
…
compute_dihedral_local.cpp
fix typos
2024-10-23 21:07:39 -04:00
compute_dihedral_local.h
…
compute_dihedral.cpp
add some calls to utils::errorurl(22)
2025-02-18 00:05:12 -05:00
compute_dihedral.h
…
compute_dipole_chunk.cpp
…
compute_dipole_chunk.h
include-what-you-use updates
2024-02-27 23:42:24 -05:00
compute_dipole.cpp
…
compute_dipole.h
apply clang-format
2024-10-06 00:25:53 -04:00
compute_displace_atom.cpp
…
compute_displace_atom.h
…
compute_erotate_sphere_atom.cpp
include-what-you-use updates
2024-02-27 23:42:24 -05:00
compute_erotate_sphere_atom.h
…
compute_erotate_sphere.cpp
Merge branch 'develop' into consolidate-sphere-omega-flag
2024-01-25 17:57:53 -05:00
compute_erotate_sphere.h
…
compute_fragment_atom.cpp
…
compute_fragment_atom.h
…
compute_global_atom.cpp
plug memory leaks
2025-03-26 04:16:54 -04:00
compute_global_atom.h
update a bunch more error messages
2025-03-19 17:17:47 -04:00
compute_group_group.cpp
use new bitmap accessor function and simplify code
2024-06-01 17:57:31 -04:00
compute_group_group.h
use new bitmap accessor function and simplify code
2024-06-01 17:57:31 -04:00
compute_gyration_chunk.cpp
…
compute_gyration_chunk.h
…
compute_gyration.cpp
…
compute_gyration.h
…
compute_heat_flux.cpp
third and final round of include-what-you-use updates
2024-02-28 17:40:17 -05:00
compute_heat_flux.h
…
compute_improper_local.cpp
enabled and apply clang-format
2024-10-19 11:02:53 -04:00
compute_improper_local.h
…
compute_improper.cpp
add some calls to utils::errorurl(22)
2025-02-18 00:05:12 -05:00
compute_improper.h
…
compute_inertia_chunk.cpp
…
compute_inertia_chunk.h
…
compute_ke_atom.cpp
include-what-you-use updates
2024-02-27 23:42:24 -05:00
compute_ke_atom.h
…
compute_ke.cpp
…
compute_ke.h
…
compute_msd_chunk.cpp
add compute vacf/chunk command
2025-02-16 22:43:28 -05:00
compute_msd_chunk.h
store 'nchunk for msd' on first pass
2024-07-06 15:57:18 -04:00
compute_msd.cpp
…
compute_msd.h
…
compute_omega_chunk.cpp
replace defines with static constexpr declarations
2024-01-21 15:53:35 -05:00
compute_omega_chunk.h
…
compute_orientorder_atom.cpp
…
compute_orientorder_atom.h
…
compute_pair_local.cpp
small cleanup and modernization
2024-10-22 10:25:22 -04:00
compute_pair_local.h
…
compute_pair.cpp
add some calls to utils::errorurl(22)
2025-02-18 00:05:12 -05:00
compute_pair.h
…
compute_pe_atom.cpp
add some calls to utils::errorurl(22)
2025-02-18 00:05:12 -05:00
compute_pe_atom.h
…
compute_pe.cpp
Merge branch 'develop' into add-error-explanations
2025-03-12 11:39:13 -04:00
compute_pe.h
…
compute_pressure.cpp
consolidate calls to utils::errorurl() with corresponding error class calls.
2025-03-19 02:23:10 -04:00
compute_pressure.h
…
compute_property_atom.cpp
Moving temp/heat keywords out of dump to compute prop/atom
2024-02-23 14:31:40 -07:00
compute_property_atom.h
Moving temp/heat keywords out of dump to compute prop/atom
2024-02-23 14:31:40 -07:00
compute_property_chunk.cpp
…
compute_property_chunk.h
…
compute_property_grid.cpp
apply clang-format
2024-08-21 15:17:28 -04:00
compute_property_grid.h
apply clang-format
2024-07-22 23:58:10 -04:00
compute_property_local.cpp
small cleanup and modernization
2024-10-22 10:25:22 -04:00
compute_property_local.h
…
compute_rdf.cpp
modernize error messages
2025-03-06 13:15:24 -05:00
compute_rdf.h
reverse normalization between type pairs if the types were swapped on input
2025-03-06 13:15:09 -05:00
compute_reduce_chunk.cpp
plug memory leaks
2025-03-26 04:16:54 -04:00
compute_reduce_chunk.h
update a bunch more error messages
2025-03-19 17:17:47 -04:00
compute_reduce_region.cpp
more error reporting updates
2025-03-20 12:31:08 -04:00
compute_reduce_region.h
…
compute_reduce.cpp
plug memory leaks
2025-03-26 04:16:54 -04:00
compute_reduce.h
update a bunch more error messages
2025-03-19 17:17:47 -04:00
compute_slice.cpp
update a bunch more error messages
2025-03-19 17:17:47 -04:00
compute_slice.h
update a bunch more error messages
2025-03-19 17:17:47 -04:00
compute_stress_atom.cpp
add some calls to utils::errorurl(22)
2025-02-18 00:05:12 -05:00
compute_stress_atom.h
…
compute_temp_chunk.cpp
…
compute_temp_chunk.h
…
compute_temp_com.cpp
…
compute_temp_com.h
…
compute_temp_deform.cpp
…
compute_temp_deform.h
…
compute_temp_partial.cpp
…
compute_temp_partial.h
…
compute_temp_profile.cpp
…
compute_temp_profile.h
…
compute_temp_ramp.cpp
…
compute_temp_ramp.h
…
compute_temp_region.cpp
…
compute_temp_region.h
…
compute_temp_sphere.cpp
compute_temp_sphere does not modify positions
2024-10-04 16:16:02 -06:00
compute_temp_sphere.h
…
compute_temp.cpp
…
compute_temp.h
…
compute_torque_chunk.cpp
…
compute_torque_chunk.h
…
compute_vacf_chunk.cpp
add compute vacf/chunk command
2025-02-16 22:43:28 -05:00
compute_vacf_chunk.h
add compute vacf/chunk command
2025-02-16 22:43:28 -05:00
compute_vacf.cpp
correct compute argument count check, avoid segfault
2025-02-14 16:55:09 -05:00
compute_vacf.h
…
compute_vcm_chunk.cpp
…
compute_vcm_chunk.h
…
compute.cpp
Merge pull request #4182 from akohlmey/group-bitmap-accessor
2025-03-25 14:12:27 -04:00
compute.h
add post_constructor() method to computes for symmetry with fixes
2025-03-24 22:59:36 -04:00
create_atoms.cpp
add explanations for "before/after simulation box is defined" errors
2025-03-21 20:30:47 -04:00
create_atoms.h
…
create_bonds.cpp
Merge pull request #4501 from lammps/errors-more-cleanup
2025-03-25 17:52:08 -04:00
create_bonds.h
use new bitmap accessor function and simplify code
2024-06-01 17:57:31 -04:00
create_box.cpp
add explanations for "before/after simulation box is defined" errors
2025-03-21 20:30:47 -04:00
create_box.h
…
delete_atoms.cpp
Merge pull request #4501 from lammps/errors-more-cleanup
2025-03-25 17:52:08 -04:00
delete_atoms.h
restore original delete_atoms implementation. new version spun off as PR #4492
2025-03-08 17:52:26 -05:00
delete_bonds.cpp
Merge pull request #4501 from lammps/errors-more-cleanup
2025-03-25 17:52:08 -04:00
delete_bonds.h
…
Depend.sh
Update GNU Make for new file
2024-11-08 14:42:59 -08:00
deprecated.cpp
…
deprecated.h
apply clang-format
2024-10-06 00:25:53 -04:00
dihedral_deprecated.cpp
…
dihedral_deprecated.h
…
dihedral_hybrid.cpp
update deallocate, suffix flags
2024-06-27 22:36:15 -06:00
dihedral_hybrid.h
update deallocate, suffix flags
2024-06-27 22:36:15 -06:00
dihedral_write.cpp
add explanations for "before/after simulation box is defined" errors
2025-03-21 20:30:47 -04:00
dihedral_write.h
apply clang-format
2024-10-06 00:25:53 -04:00
dihedral_zero.cpp
add url to dihedral_coeff messages
2025-02-10 09:57:04 -07:00
dihedral_zero.h
…
dihedral.cpp
convert remaining errors to print coeff status
2025-03-16 06:03:23 -04:00
dihedral.h
apply clang-format
2024-10-06 00:25:53 -04:00
displace_atoms.cpp
error out or ignore on displacements in z-direction with 2d system
2025-03-26 04:57:01 -04:00
displace_atoms.h
…
domain.cpp
explain image flag related errors and warnings
2025-03-13 09:36:58 -04:00
domain.h
apply clang-format
2024-10-06 00:25:53 -04:00
dump_atom.cpp
replace fmt::print() with utils::print()
2025-01-23 00:11:31 -05:00
dump_atom.h
apply clang-format
2024-10-06 00:25:53 -04:00
dump_cfg.cpp
replace fmt::print() with utils::print()
2025-01-23 00:11:31 -05:00
dump_cfg.h
…
dump_custom.cpp
update a bunch more error messages
2025-03-19 17:17:47 -04:00
dump_custom.h
apply clang-format
2024-10-06 00:25:53 -04:00
dump_deprecated.cpp
…
dump_deprecated.h
…
dump_grid_vtk.cpp
…
dump_grid_vtk.h
…
dump_grid.cpp
replace fmt::print() with utils::print()
2025-01-23 00:11:31 -05:00
dump_grid.h
…
dump_image.cpp
more error reporting updates
2025-03-20 12:31:08 -04:00
dump_image.h
apply clang-format
2024-10-06 00:25:53 -04:00
dump_local.cpp
update a bunch more error messages
2025-03-19 17:17:47 -04:00
dump_local.h
…
dump_movie.cpp
…
dump_movie.h
…
dump_xyz.cpp
replace fmt::print() with utils::print()
2025-01-23 00:11:31 -05:00
dump_xyz.h
…
dump.cpp
Merge pull request #4501 from lammps/errors-more-cleanup
2025-03-25 17:52:08 -04:00
dump.h
dump custom, 'typelabel' attribute
2024-05-27 23:58:58 -04:00
error.cpp
sync new library interface function across all interfaced derived packages
2025-03-24 04:33:27 -04:00
error.h
have Error::set_show_error() return the previous setting
2025-03-24 04:13:24 -04:00
ewald_const.h
move ewald_const.h to src and apply it to a few more files
2024-02-13 08:02:32 -05:00
exceptions.h
…
Fetch.sh
…
file_writer.h
…
finish.cpp
use mutex to avoid race condition when accessing thermo data during run
2025-01-12 23:27:17 -05:00
finish.h
…
fix_adapt.cpp
update error messages to use new Error class APIs
2025-02-09 10:53:03 -05:00
fix_adapt.h
…
fix_addforce.cpp
some more fixes to address coverity scan warnings.
2025-01-15 23:12:39 -05:00
fix_addforce.h
…
fix_ave_atom.cpp
update a bunch more error messages
2025-03-19 17:17:47 -04:00
fix_ave_atom.h
update fix ave/atom and fix ave/chunk to have errors with position indicator
2025-01-31 04:33:24 -05:00
fix_ave_chunk.cpp
plug memory leaks
2025-03-26 04:16:54 -04:00
fix_ave_chunk.h
update fix ave/atom and fix ave/chunk to have errors with position indicator
2025-01-31 04:33:24 -05:00
fix_ave_correlate.cpp
plug memory leaks
2025-03-26 04:16:54 -04:00
fix_ave_correlate.h
update fix ave/correlate for new error message features
2025-01-31 07:32:05 -05:00
fix_ave_grid.cpp
add some more missing errorurl() calls and error pointers
2025-03-20 22:45:01 -04:00
fix_ave_grid.h
convert fix ave/correlate/long and fix ave/grid to new error APIs
2025-02-01 09:03:56 -05:00
fix_ave_histo_weight.cpp
convert fix ave/correlate/long and fix ave/grid to new error APIs
2025-02-01 09:03:56 -05:00
fix_ave_histo_weight.h
…
fix_ave_histo.cpp
flag some more compatible time and out-of-bounds errors with errorurl()s
2025-03-20 06:16:59 -04:00
fix_ave_histo.h
convert fix ave/histo to have improved error messages
2025-01-23 22:29:56 -05:00
fix_ave_time.cpp
flag some more compatible time and out-of-bounds errors with errorurl()s
2025-03-20 06:16:59 -04:00
fix_ave_time.h
simplify custom format processing
2025-01-31 07:22:22 -05:00
fix_aveforce.cpp
…
fix_aveforce.h
…
fix_balance.cpp
improve error messages for fix balance
2025-02-23 18:33:32 -05:00
fix_balance.h
apply clang-format
2024-10-04 19:41:59 -04:00
fix_bond_history.cpp
Adding BPM contribution statements
2025-02-04 15:49:01 -07:00
fix_bond_history.h
apply clang-format
2024-10-04 19:41:59 -04:00
fix_box_relax.cpp
consolidate errors #6 and #7 plus handle non-numeric box. add missing entries.
2025-03-17 11:40:36 -04:00
fix_box_relax.h
convert a few more defines to static constexpr
2024-02-05 23:57:41 -05:00
fix_deform.cpp
remove whitespaces
2024-08-06 01:21:02 -04:00
fix_deform.h
Improvements & bug fixes to fix def/press
2024-04-19 15:14:42 -06:00
fix_deposit.cpp
adapt to LAMMPS programming style
2025-01-11 18:05:16 -05:00
fix_deposit.h
apply clang-format
2024-07-22 23:58:10 -04:00
fix_deprecated.cpp
…
fix_deprecated.h
…
fix_dt_reset.cpp
replace defines with static constexpr declarations
2024-01-21 15:53:35 -05:00
fix_dt_reset.h
…
fix_dummy.cpp
…
fix_dummy.h
…
fix_efield.cpp
apply clang-format
2024-09-25 18:48:47 -04:00
fix_efield.h
Update fix_efield.h
2024-09-04 16:11:17 -04:00
fix_enforce2d.cpp
include-what-you-use updates
2024-02-27 23:42:24 -05:00
fix_enforce2d.h
…
fix_evaporate.cpp
…
fix_evaporate.h
…
fix_external.cpp
get access to the applied external force from the fix
2024-11-24 22:25:38 -05:00
fix_external.h
…
fix_gravity.cpp
…
fix_gravity.h
…
fix_group.cpp
…
fix_group.h
…
fix_halt.cpp
address issues flagged by coverity scan
2025-03-15 21:38:18 -04:00
fix_halt.h
add option to synchronize fix halt stop requests across multi-partition runs
2025-03-07 11:40:27 -05:00
fix_heat.cpp
…
fix_heat.h
…
fix_indent.cpp
remove pointless check
2024-07-06 09:55:41 -04:00
fix_indent.h
apply clang-format
2024-10-06 00:25:53 -04:00
fix_langevin.cpp
Fix small memory leak, add debug RNG
2025-01-20 17:37:32 -07:00
fix_langevin.h
…
fix_lineforce.cpp
…
fix_lineforce.h
…
fix_minimize.cpp
…
fix_minimize.h
…
fix_momentum.cpp
…
fix_momentum.h
…
fix_move.cpp
modernize error messages
2025-03-06 11:07:34 -05:00
fix_move.h
Add checks, update flags
2025-03-05 00:19:27 -05:00
fix_neigh_history.cpp
…
fix_neigh_history.h
Accessor for history, ensure saved bonds processed in update/special/bonds
2024-07-19 13:58:16 -06:00
fix_nh_sphere.cpp
more fix::init() checks and some clang-formatting for NH style classes
2024-12-27 08:44:02 -05:00
fix_nh_sphere.h
…
fix_nh.cpp
Merge pull request #4501 from lammps/errors-more-cleanup
2025-03-25 17:52:08 -04:00
fix_nh.h
…
fix_nph_sphere.cpp
…
fix_nph_sphere.h
…
fix_nph.cpp
…
fix_nph.h
…
fix_npt_sphere.cpp
…
fix_npt_sphere.h
…
fix_npt.cpp
…
fix_npt.h
…
fix_nve_limit.cpp
…
fix_nve_limit.h
added fix nve/limit/kk
2024-08-19 20:58:41 -04:00
fix_nve_noforce.cpp
…
fix_nve_noforce.h
…
fix_nve_sphere.cpp
remove sphere_flag and replace with radius_flag and omega_flag as needed
2024-01-19 12:50:31 -05:00
fix_nve_sphere.h
…
fix_nve.cpp
improve and modernize error messages
2025-02-14 15:23:16 -05:00
fix_nve.h
…
fix_nvt_sllod.cpp
…
fix_nvt_sllod.h
apply clang-format
2024-07-22 23:58:10 -04:00
fix_nvt_sphere.cpp
…
fix_nvt_sphere.h
…
fix_nvt.cpp
…
fix_nvt.h
…
fix_pair.cpp
third and final round of include-what-you-use updates
2024-02-28 17:40:17 -05:00
fix_pair.h
…
fix_planeforce.cpp
…
fix_planeforce.h
…
fix_press_berendsen.cpp
more fix::init() checks and some clang-formatting for NH style classes
2024-12-27 08:44:02 -05:00
fix_press_berendsen.h
…
fix_press_langevin.cpp
more fix::init() checks and some clang-formatting for NH style classes
2024-12-27 08:44:02 -05:00
fix_press_langevin.h
…
fix_print.cpp
replace fmt::print() with utils::print()
2025-01-23 00:11:31 -05:00
fix_print.h
modernize and enable clang-format
2024-03-17 00:04:06 -04:00
fix_property_atom.cpp
replace fmt::print() with utils::print()
2025-01-23 00:11:31 -05:00
fix_property_atom.h
Revert "add extract function to fix_property_atom"
2023-12-15 10:58:06 +10:00
fix_read_restart.cpp
…
fix_read_restart.h
…
fix_recenter.cpp
three more
2025-01-09 21:23:56 -05:00
fix_recenter.h
first draft fix recenter/kk and unit test
2024-07-30 03:30:38 -04:00
fix_respa.cpp
…
fix_respa.h
…
fix_restrain.cpp
replace fmt::print() with utils::print()
2025-01-23 00:11:31 -05:00
fix_restrain.h
…
fix_setforce.cpp
…
fix_setforce.h
…
fix_spring_chunk.cpp
replace defines with static constexpr declarations
2024-01-21 15:53:35 -05:00
fix_spring_chunk.h
…
fix_spring_self.cpp
avoid memory leaks
2024-11-17 12:14:28 -05:00
fix_spring_self.h
error out in fix spring/self/kk with variable spring constant
2024-11-15 14:33:25 -05:00
fix_spring.cpp
error out on non-existing groups and improve error messages
2025-03-26 04:45:13 -04:00
fix_spring.h
…
fix_store_atom.cpp
…
fix_store_atom.h
apply clang-format
2024-07-22 23:58:10 -04:00
fix_store_force.cpp
…
fix_store_force.h
…
fix_store_global.cpp
whitespace
2024-08-10 10:13:36 -04:00
fix_store_global.h
…
fix_store_local.cpp
replace defines with static constexpr declarations
2024-01-21 15:53:35 -05:00
fix_store_local.h
…
fix_store_state.cpp
flag some more compatible time and out-of-bounds errors with errorurl()s
2025-03-20 06:16:59 -04:00
fix_store_state.h
apply clang-format
2024-07-22 23:58:10 -04:00
fix_temp_berendsen.cpp
more checking on temperature and pressure computes plus bugfixes
2024-12-24 16:06:17 -05:00
fix_temp_berendsen.h
…
fix_temp_rescale.cpp
validate that a non-temperature compute has not been replaced without fix_modify
2024-12-23 20:24:24 -05:00
fix_temp_rescale.h
…
fix_thermal_conductivity.cpp
replace defines with static constexpr declarations
2024-01-21 15:53:35 -05:00
fix_thermal_conductivity.h
…
fix_vector.cpp
flag some more compatible time and out-of-bounds errors with errorurl()s
2025-03-20 06:16:59 -04:00
fix_vector.h
…
fix_viscous.cpp
…
fix_viscous.h
…
fix_wall_harmonic.cpp
…
fix_wall_harmonic.h
…
fix_wall_lj93.cpp
include-what-you-use updates
2024-02-27 23:42:24 -05:00
fix_wall_lj93.h
…
fix_wall_lj126.cpp
include-what-you-use updates
2024-02-27 23:42:24 -05:00
fix_wall_lj126.h
…
fix_wall_lj1043.cpp
…
fix_wall_lj1043.h
…
fix_wall_morse.cpp
…
fix_wall_morse.h
…
fix_wall_reflect.cpp
fix uninitialized data bug when using a child class
2024-02-01 20:15:04 -05:00
fix_wall_reflect.h
…
fix_wall_region.cpp
Update fix_wall_region.cpp
2024-10-05 12:02:00 -04:00
fix_wall_region.h
Update fix_wall_region.h
2024-10-05 12:01:34 -04:00
fix_wall_table.cpp
…
fix_wall_table.h
…
fix_wall.cpp
bugfix for gpu and simplify by replacing functor with operator()
2024-08-06 00:43:07 -04:00
fix_wall.h
remove whitespaces
2024-08-06 01:21:02 -04:00
fix.cpp
a couple more updates to use the new API
2025-01-09 19:30:34 -05:00
fix.h
Fix small memory leak, add debug RNG
2025-01-20 17:37:32 -07:00
fmtlib_format.cpp
Revert "import code for fmtlib 11.1.0"
2025-01-23 00:17:01 -05:00
fmtlib_os.cpp
Revert "import libfmt 11.0.1"
2025-01-23 03:41:29 -05:00
force.cpp
…
force.h
…
grid2d.cpp
2 bug fixes
2024-08-21 10:28:24 -06:00
grid2d.h
2 bug fixes
2024-08-21 10:28:24 -06:00
grid3d.cpp
2 bug fixes
2024-08-21 10:28:24 -06:00
grid3d.h
2 bug fixes
2024-08-21 10:28:24 -06:00
group.cpp
Merge pull request #4501 from lammps/errors-more-cleanup
2025-03-25 17:52:08 -04:00
group.h
add get_bitmask_by_id() accessor to Group class
2024-02-27 10:16:34 -05:00
hashlittle.cpp
…
hashlittle.h
…
image.cpp
precompute random numbers to avoid memory corruption with multi-threading
2024-08-15 00:25:28 -04:00
image.h
…
imbalance_group.cpp
…
imbalance_group.h
…
imbalance_neigh.cpp
third and final round of include-what-you-use updates
2024-02-28 17:40:17 -05:00
imbalance_neigh.h
…
imbalance_store.cpp
…
imbalance_store.h
…
imbalance_time.cpp
replace defines with static constexpr declarations
2024-01-21 15:53:35 -05:00
imbalance_time.h
…
imbalance_var.cpp
…
imbalance_var.h
…
imbalance.cpp
…
imbalance.h
apply clang-format
2024-10-06 00:25:53 -04:00
improper_deprecated.cpp
…
improper_deprecated.h
…
improper_hybrid.cpp
update deallocate, suffix flags
2024-06-27 22:36:15 -06:00
improper_hybrid.h
update deallocate, suffix flags
2024-06-27 22:36:15 -06:00
improper_zero.cpp
add url to improper_coeff messages
2025-02-10 09:59:04 -07:00
improper_zero.h
…
improper.cpp
convert remaining errors to print coeff status
2025-03-16 06:03:23 -04:00
improper.h
apply clang-format
2024-10-06 00:25:53 -04:00
info.cpp
Merge remote-tracking branch 'github/develop' into errors-more-cleanup
2025-03-19 01:39:22 -04:00
info.h
refactor info code so coeffs status can be appended to error
2025-03-15 20:11:33 -04:00
input.cpp
add explanations for "before/after simulation box is defined" errors
2025-03-21 20:30:47 -04:00
input.h
refactor how error output is created and only print input and parsed line if they differ in text
2025-01-17 18:06:31 -05:00
Install.sh
…
integrate.cpp
fix refactoring bug
2024-01-21 14:22:41 -05:00
integrate.h
include-what-you-use updates
2024-02-27 23:42:24 -05:00
irregular.cpp
Revert "use memory create/destroy for allocating MPI objects which prefer 16 byte alignment"
2024-08-19 00:16:50 -04:00
irregular.h
…
kspace_deprecated.cpp
…
kspace_deprecated.h
…
kspace.cpp
add explanations for "before/after simulation box is defined" errors
2025-03-21 20:30:47 -04:00
kspace.h
add missing constants to enumerators
2024-10-10 08:00:38 -04:00
label_map.cpp
add explanations for "before/after simulation box is defined" errors
2025-03-21 20:30:47 -04:00
label_map.h
dump custom, 'typelabel' attribute
2024-05-27 23:58:58 -04:00
lammps.cpp
Merge branch 'develop' into remove-smallsmall
2025-03-15 02:11:02 -04:00
lammps.h
use command-line consistently where applicable and drop "line" where not
2024-12-27 04:03:41 -05:00
lammpsplugin.h
…
lattice.cpp
remove whitespace
2024-04-08 10:49:53 -06:00
lattice.h
…
library.cpp
Merge branch 'develop' into collected-small-fixes
2025-03-26 20:10:20 -04:00
library.h
sync new library interface function across all interfaced derived packages
2025-03-24 04:33:27 -04:00
lmpfftsettings.h
cleanup
2024-08-29 18:20:41 +00:00
lmppython.cpp
…
lmppython.h
…
lmprestart.h
…
lmptype.h
remove references to -DLAMMPS_SMALLSMALL and trigger error when used
2025-03-14 10:20:31 -04:00
main.cpp
provide URL to explain fmt::format_error
2025-02-17 23:05:42 -05:00
Make.sh
…
Makefile
Add check that Python 3 is required
2025-02-07 21:52:17 -05:00
Makefile.list
…
Makefile.package.empty
…
Makefile.package.settings.empty
…
Makefile.print
…
math_const.h
…
math_eigen_impl.h
…
math_eigen.cpp
more debugging
2024-04-03 11:11:16 -06:00
math_eigen.h
add optional argument to enable overriding sort order or eigenvalues/vectors
2024-04-02 23:28:14 -04:00
math_extra.cpp
…
math_extra.h
…
math_special.cpp
get rid of some non-ASCII characters
2024-09-25 22:01:42 -04:00
math_special.h
…
memory.cpp
…
memory.h
…
min_cg.cpp
convert a few more defines to static constexpr
2024-02-05 23:57:41 -05:00
min_cg.h
…
min_deprecated.cpp
…
min_deprecated.h
…
min_fire.cpp
get rid of some non-ASCII characters
2024-09-25 22:01:42 -04:00
min_fire.h
…
min_hftn.cpp
…
min_hftn.h
…
min_linesearch.cpp
Changed alpha_init initialization to avoid infinite loop with 0 starting
2024-04-26 14:46:30 +02:00
min_linesearch.h
…
min_quickmin.cpp
convert a few more defines to static constexpr
2024-02-05 23:57:41 -05:00
min_quickmin.h
…
min_sd.cpp
convert a few more defines to static constexpr
2024-02-05 23:57:41 -05:00
min_sd.h
…
min.cpp
replace fmt::print() with utils::print()
2025-01-23 00:11:31 -05:00
min.h
apply clang-format
2024-07-22 23:58:10 -04:00
minimize.cpp
add explanations for "before/after simulation box is defined" errors
2025-03-21 20:30:47 -04:00
minimize.h
…
modify.cpp
Merge remote-tracking branch 'github/develop' into collected-small-fixes
2025-03-25 17:53:23 -04:00
modify.h
apply clang-format
2024-07-22 23:58:10 -04:00
molecule.cpp
provide error information for two more cases
2025-03-13 05:31:41 -04:00
molecule.h
modernize error messages for processing molecule files
2025-01-31 20:33:47 -05:00
my_page.cpp
Edits to devleoper doc files 2
2024-08-15 17:12:39 -06:00
my_page.h
Edits to devleoper doc files 2
2024-08-15 17:12:39 -06:00
my_pool_chunk.cpp
Edits to devleoper doc files 2
2024-08-15 17:12:39 -06:00
my_pool_chunk.h
add missing header
2024-07-05 16:23:02 -04:00
nbin_multi.cpp
reassign error URL numbers to match list in pull request
2025-01-31 17:49:24 -05:00
nbin_multi.h
…
nbin_standard.cpp
reassign error URL numbers to match list in pull request
2025-01-31 17:49:24 -05:00
nbin_standard.h
…
nbin.cpp
remove leading 0 in single-digit url codes
2025-03-12 07:39:45 -06:00
nbin.h
…
neigh_list.cpp
initial version of pair style hybrid/molecular
2024-06-09 07:02:18 -04:00
neigh_list.h
initial version of pair style hybrid/molecular
2024-06-09 07:02:18 -04:00
neigh_request.cpp
small tweaks
2024-06-09 12:03:40 -04:00
neigh_request.h
initial version of pair style hybrid/molecular
2024-06-09 07:02:18 -04:00
neighbor.cpp
move update to cutneighmin from neighbor lists requests with explicit cutoff to a better location
2025-02-14 19:11:07 -05:00
neighbor.h
apply clang-format
2024-07-31 06:49:55 -04:00
npair_bin_ghost.cpp
…
npair_bin_ghost.h
…
npair_bin.cpp
include-what-you-use updates
2024-02-27 23:42:24 -05:00
npair_bin.h
…
npair_copy.cpp
…
npair_copy.h
…
npair_halffull.cpp
use pairwise cutoff for trimming unless a custom cutoff if given
2025-03-05 04:23:07 -05:00
npair_halffull.h
remove redundant and problem causing NP_INTRA flag
2024-06-10 06:46:22 -04:00
npair_multi_old.cpp
second round of include-what-you-use updates
2024-02-28 15:37:13 -05:00
npair_multi_old.h
…
npair_multi.cpp
second round of include-what-you-use updates
2024-02-28 15:37:13 -05:00
npair_multi.h
…
npair_nsq_ghost.cpp
…
npair_nsq_ghost.h
…
npair_nsq.cpp
second round of include-what-you-use updates
2024-02-28 15:37:13 -05:00
npair_nsq.h
…
npair_respa_bin.cpp
second round of include-what-you-use updates
2024-02-28 15:37:13 -05:00
npair_respa_bin.h
…
npair_respa_nsq.cpp
second round of include-what-you-use updates
2024-02-28 15:37:13 -05:00
npair_respa_nsq.h
…
npair_skip_respa.cpp
use pairwise cutoff for trimming unless a custom cutoff if given
2025-03-05 04:23:07 -05:00
npair_skip_respa.h
remove redundant and problem causing NP_INTRA flag
2024-06-10 06:46:22 -04:00
npair_skip_size_off2on_oneside.cpp
only trim if neighbor list request has a custom cutoff
2025-03-05 04:16:13 -05:00
npair_skip_size_off2on_oneside.h
…
npair_skip_size_off2on.cpp
only trim if neighbor list request has a custom cutoff
2025-03-05 04:16:13 -05:00
npair_skip_size_off2on.h
…
npair_skip.cpp
use pairwise cutoff for trimming unless a custom cutoff if given
2025-03-05 04:23:07 -05:00
npair_skip.h
remove redundant and problem causing NP_INTRA flag
2024-06-10 06:46:22 -04:00
npair_trim.cpp
use pairwise cutoff for trimming unless a custom cutoff if given
2025-03-05 04:23:07 -05:00
npair_trim.h
…
npair.cpp
consolidate errors #6 and #7 plus handle non-numeric box. add missing entries.
2025-03-17 11:40:36 -04:00
npair.h
…
nstencil_bin.cpp
improvements from clang-tidy
2023-12-21 14:25:31 -05:00
nstencil_bin.h
…
nstencil_ghost_bin.cpp
…
nstencil_ghost_bin.h
…
nstencil_multi_old.cpp
improvements from clang-tidy
2023-12-21 14:25:31 -05:00
nstencil_multi_old.h
…
nstencil_multi.cpp
improvements from clang-tidy
2023-12-21 14:25:31 -05:00
nstencil_multi.h
…
nstencil.cpp
Adding clarifying comment
2024-11-04 13:24:27 -07:00
nstencil.h
…
ntopo_angle_all.cpp
renumber error 30 to 5 to match list of errors. Update error calls
2025-02-18 00:26:15 -05:00
ntopo_angle_all.h
…
ntopo_angle_partial.cpp
renumber error 30 to 5 to match list of errors. Update error calls
2025-02-18 00:26:15 -05:00
ntopo_angle_partial.h
…
ntopo_angle_template.cpp
renumber error 30 to 5 to match list of errors. Update error calls
2025-02-18 00:26:15 -05:00
ntopo_angle_template.h
…
ntopo_bond_all.cpp
renumber error 30 to 5 to match list of errors. Update error calls
2025-02-18 00:26:15 -05:00
ntopo_bond_all.h
…
ntopo_bond_partial.cpp
renumber error 30 to 5 to match list of errors. Update error calls
2025-02-18 00:26:15 -05:00
ntopo_bond_partial.h
…
ntopo_bond_template.cpp
renumber error 30 to 5 to match list of errors. Update error calls
2025-02-18 00:26:15 -05:00
ntopo_bond_template.h
…
ntopo_dihedral_all.cpp
renumber error 30 to 5 to match list of errors. Update error calls
2025-02-18 00:26:15 -05:00
ntopo_dihedral_all.h
…
ntopo_dihedral_partial.cpp
renumber error 30 to 5 to match list of errors. Update error calls
2025-02-18 00:26:15 -05:00
ntopo_dihedral_partial.h
…
ntopo_dihedral_template.cpp
renumber error 30 to 5 to match list of errors. Update error calls
2025-02-18 00:26:15 -05:00
ntopo_dihedral_template.h
…
ntopo_improper_all.cpp
renumber error 30 to 5 to match list of errors. Update error calls
2025-02-18 00:26:15 -05:00
ntopo_improper_all.h
…
ntopo_improper_partial.cpp
renumber error 30 to 5 to match list of errors. Update error calls
2025-02-18 00:26:15 -05:00
ntopo_improper_partial.h
…
ntopo_improper_template.cpp
renumber error 30 to 5 to match list of errors. Update error calls
2025-02-18 00:26:15 -05:00
ntopo_improper_template.h
…
ntopo.cpp
replace defines with static constexpr declarations
2024-01-21 15:53:35 -05:00
ntopo.h
…
omp_compat.h
…
output.cpp
add explanations for "before/after simulation box is defined" errors
2025-03-21 20:30:47 -04:00
output.h
…
pack.h
…
Package.sh
…
pair_born.cpp
also print pair coeff setflag status when not all pair coeffs are set
2025-03-15 21:16:07 -04:00
pair_born.h
…
pair_buck_coul_cut.cpp
also print pair coeff setflag status when not all pair coeffs are set
2025-03-15 21:16:07 -04:00
pair_buck_coul_cut.h
…
pair_buck.cpp
also print pair coeff setflag status when not all pair coeffs are set
2025-03-15 21:16:07 -04:00
pair_buck.h
…
pair_coul_cut.cpp
update all simple coeff messages
2025-02-03 12:13:52 -07:00
pair_coul_cut.h
…
pair_coul_debye.cpp
…
pair_coul_debye.h
…
pair_coul_dsf.cpp
update all simple coeff messages
2025-02-03 12:13:52 -07:00
pair_coul_dsf.h
…
pair_coul_wolf.cpp
update all simple coeff messages
2025-02-03 12:13:52 -07:00
pair_coul_wolf.h
…
pair_deprecated.cpp
meam/c is no longer an alias for meam
2024-04-28 08:43:24 -04:00
pair_deprecated.h
meam/c is no longer an alias for meam
2024-04-28 08:43:24 -04:00
pair_hybrid_molecular.cpp
also print pair coeff setflag status when not all pair coeffs are set
2025-03-15 21:16:07 -04:00
pair_hybrid_molecular.h
add /omp aliases to hybrid pair styles for consistency and added tests
2024-06-10 07:33:17 -04:00
pair_hybrid_overlay.cpp
update all simple coeff messages
2025-02-03 12:13:52 -07:00
pair_hybrid_overlay.h
add /omp aliases to hybrid pair styles for consistency and added tests
2024-06-10 07:33:17 -04:00
pair_hybrid_scaled.cpp
merge 'develop'
2025-02-13 17:13:28 -05:00
pair_hybrid_scaled.h
Fixed merge conflict
2025-01-15 14:14:51 -07:00
pair_hybrid.cpp
also print pair coeff setflag status when not all pair coeffs are set
2025-03-15 21:16:07 -04:00
pair_hybrid.h
add check to allow only valid swaps between hybrid sub-styles and document it
2024-10-18 21:49:55 -04:00
pair_lj_cut_coul_cut.cpp
update all simple coeff messages
2025-02-03 12:13:52 -07:00
pair_lj_cut_coul_cut.h
…
pair_lj_cut.cpp
update all simple coeff messages
2025-02-03 12:13:52 -07:00
pair_lj_cut.h
…
pair_lj_expand.cpp
update all simple coeff messages
2025-02-03 12:13:52 -07:00
pair_lj_expand.h
…
pair_morse.cpp
also print pair coeff setflag status when not all pair coeffs are set
2025-03-15 21:16:07 -04:00
pair_morse.h
…
pair_soft.cpp
update all simple coeff messages
2025-02-03 12:13:52 -07:00
pair_soft.h
Add Kokkos version of pair_style soft
2024-06-04 13:57:51 -06:00
pair_table.cpp
also print pair coeff setflag status when not all pair coeffs are set
2025-03-15 21:16:07 -04:00
pair_table.h
…
pair_yukawa.cpp
Merge pull request #4456 from akohlmey/add-error-explanations
2025-03-14 20:18:34 -04:00
pair_yukawa.h
define extract() in pair_yukawa.h
2025-03-14 09:16:57 +01:00
pair_zbl_const.h
…
pair_zbl.cpp
update all simple coeff messages
2025-02-03 12:13:52 -07:00
pair_zbl.h
…
pair_zero.cpp
update all simple coeff messages
2025-02-03 12:13:52 -07:00
pair_zero.h
…
pair.cpp
also print pair coeff setflag status when not all pair coeffs are set
2025-03-15 21:16:07 -04:00
pair.h
apply clang-format
2024-07-22 23:58:10 -04:00
platform.cpp
add a write permission check before opening a pipe for compressed writes
2025-03-26 23:09:39 -04:00
platform.h
add a write permission check before opening a pipe for compressed writes
2025-03-26 23:09:39 -04:00
pointers.h
…
potential_file_reader.cpp
Edits to devleoper doc files 2
2024-08-15 17:12:39 -06:00
potential_file_reader.h
…
procmap.cpp
Add option to specify # of numa domains for processors grid numa style, simplify numa mapping with more agressive optimization to reduce comm between numa domains.
2024-03-07 07:07:16 -08:00
procmap.h
Add option to specify # of numa domains for processors grid numa style, simplify numa mapping with more agressive optimization to reduce comm between numa domains.
2024-03-07 07:07:16 -08:00
Purge.list
Fix issues in KOKKOS package
2024-12-03 16:20:34 -08:00
random_mars.cpp
…
random_mars.h
…
random_park.cpp
…
random_park.h
…
rcb.cpp
even more define to static constexpr conversions
2024-01-25 02:17:28 -05:00
rcb.h
…
read_data.cpp
add explanations for "before/after simulation box is defined" errors
2025-03-21 20:30:47 -04:00
read_data.h
…
read_dump.cpp
add explanations for "before/after simulation box is defined" errors
2025-03-21 20:30:47 -04:00
read_dump.h
…
read_restart.cpp
add explanations for "before/after simulation box is defined" errors
2025-03-21 20:30:47 -04:00
read_restart.h
…
reader_native.cpp
try to make coverity happy
2024-08-22 23:55:59 -04:00
reader_native.h
…
reader_xyz.cpp
improve error message and labelmap detection
2024-09-21 22:20:24 -04:00
reader_xyz.h
…
reader.cpp
…
reader.h
…
region_block.cpp
whitespace
2024-10-24 09:43:36 -06:00
region_block.h
give Region2VMD class access to protected members of region style classes
2025-02-08 18:05:57 -05:00
region_cone.cpp
improve error messages
2025-02-12 16:31:51 -05:00
region_cone.h
give Region2VMD class access to protected members of region style classes
2025-02-08 18:05:57 -05:00
region_cylinder.cpp
consolidate replicated enum to base class header and inside the class definition
2024-08-31 02:00:30 -04:00
region_cylinder.h
give Region2VMD class access to protected members of region style classes
2025-02-08 18:05:57 -05:00
region_deprecated.cpp
…
region_deprecated.h
…
region_ellipsoid.cpp
make certain variable indices are initialized
2025-02-28 03:43:58 -05:00
region_ellipsoid.h
add support for ellipsoid regions
2025-02-10 00:05:42 -05:00
region_intersect.cpp
…
region_intersect.h
…
region_plane.cpp
make certain that nstyle is always initialized and detect partial variable setups
2025-02-27 23:28:19 -05:00
region_plane.h
Merge branch 'develop' into patch-4
2025-02-26 10:40:41 -05:00
region_prism.cpp
remove whitespace from region_prism.cpp
2024-12-16 19:57:41 +02:00
region_prism.h
add support to prism regions to be exported to VMD
2025-02-09 10:16:30 -05:00
region_sphere.cpp
whitespace
2024-10-24 09:43:36 -06:00
region_sphere.h
give Region2VMD class access to protected members of region style classes
2025-02-08 18:05:57 -05:00
region_union.cpp
…
region_union.h
…
region.cpp
improve error messages
2025-02-12 16:31:51 -05:00
region.h
make certain that nstyle is always initialized and detect partial variable setups
2025-02-27 23:28:19 -05:00
replicate.cpp
add explanations for "before/after simulation box is defined" errors
2025-03-21 20:30:47 -04:00
replicate.h
apply clang-format
2024-07-22 23:58:10 -04:00
rerun.cpp
add explanations for "before/after simulation box is defined" errors
2025-03-21 20:30:47 -04:00
rerun.h
…
reset_atoms_id.cpp
add explanations for "before/after simulation box is defined" errors
2025-03-21 20:30:47 -04:00
reset_atoms_id.h
…
reset_atoms_image.cpp
add explanations for "before/after simulation box is defined" errors
2025-03-21 20:30:47 -04:00
reset_atoms_image.h
…
reset_atoms_mol.cpp
add explanations for "before/after simulation box is defined" errors
2025-03-21 20:30:47 -04:00
reset_atoms_mol.h
…
respa.cpp
fix some issues flagged by coverity scan
2025-01-14 22:23:24 -05:00
respa.h
…
run.cpp
add explanations for "before/after simulation box is defined" errors
2025-03-21 20:30:47 -04:00
run.h
…
safe_pointers.h
make C++11 compatible
2025-02-13 20:39:18 -05:00
set.cpp
remove misplaced excess error call
2025-03-26 04:17:36 -04:00
set.h
apply clang-format
2024-10-06 00:25:53 -04:00
special.cpp
even more define to static constexpr conversions
2024-01-25 02:17:28 -05:00
special.h
…
suffix.h
…
table_file_reader.cpp
…
table_file_reader.h
…
tabular_function.cpp
…
tabular_function.h
…
text_file_reader.cpp
be more paranoid about cleaning up
2024-08-20 04:10:15 -04:00
text_file_reader.h
clarify
2025-02-12 21:47:11 -05:00
thermo.cpp
flag some more compatible time and out-of-bounds errors with errorurl()s
2025-03-20 06:16:59 -04:00
thermo.h
macOS does not like forward declarations for standard C++ classes
2025-01-12 23:50:33 -05:00
timer.cpp
properly tally the SYNC time contributions to the ALL time entry
2025-03-10 12:16:51 -04:00
timer.h
Timer::_timeout should be double and it should be allowed to have fractions.
2024-06-29 03:43:26 -04:00
tokenizer.cpp
reimplement using C++11
2024-07-30 00:33:44 -04:00
tokenizer.h
small doxygen updates
2024-12-14 21:40:47 -05:00
universe.cpp
use std::stoX() functions
2024-07-30 03:57:23 -04:00
universe.h
…
update.cpp
improve error messages
2025-01-02 19:38:10 -05:00
update.h
…
utils.cpp
Merge branch 'develop' into errors-more-cleanup
2025-03-23 16:01:00 -04:00
utils.h
make utils::errorurl() point to generic page with error code 0
2025-03-20 22:45:41 -04:00
variable.cpp
flag some more compatible time and out-of-bounds errors with errorurl()s
2025-03-20 06:16:59 -04:00
variable.h
apply clang-format
2024-10-06 00:25:53 -04:00
velocity.cpp
add explanations for "before/after simulation box is defined" errors
2025-03-21 20:30:47 -04:00
velocity.h
…
verlet.cpp
add url for warning 28
2025-03-12 07:28:58 -06:00
verlet.h
…
version.h
flag development version
2025-02-08 09:08:43 -05:00
write_coeff.cpp
add explanations for "before/after simulation box is defined" errors
2025-03-21 20:30:47 -04:00
write_coeff.h
apply clang-format
2024-10-06 00:25:53 -04:00
write_data.cpp
add explanations for "before/after simulation box is defined" errors
2025-03-21 20:30:47 -04:00
write_data.h
when using "write_data" with "noinit" and "pair ij" generate missing pair coeffs by calling Pair::init_one()
2024-08-06 06:17:44 -04:00
write_dump.cpp
use command-line consistently where applicable and drop "line" where not
2024-12-27 04:03:41 -05:00
write_dump.h
apply clang-format
2024-10-06 00:25:53 -04:00
write_restart.cpp
add explanations for "before/after simulation box is defined" errors
2025-03-21 20:30:47 -04:00
write_restart.h
…