ENH: limit output to 25 cell types per line for readability
- makes it easier to trace potential format errors etc
STYLE: downgrade warning about polyhedrals to a simple info message
- can assume that polyhedral support is widespread enough to not
warrant a warning.
- the problem arises when output fields are missing on some
processors.
When the information is combined, the resulting HashTables can have
different insertion orders. This poses an issue when there are hash
key collisions and thus different chaining.
- Use sorted order.
- bin/tools/create-mpi-config to query/write values for system openmpi.
In some cases this can be used to avoid an mpicc requirement at runtime.
- adjust openfoam session to latest version,
including -test-tutorial forwarding.
- adjust foamConfigurePaths to latest version
- removal of gperftools default config, as per develop
- the foamConfigurePaths script is quite simplistic and aggressive in
what it changes. This was particularly evident when using it to
change gcc/clang versions.
Restructured the corresponding compiler settings to define default
versions (eg, "default_gcc_version") that limits the scope of
changes performed by foamConfigurePaths and makes it easier to
understand if changing manually.
- indexing error in the output of values resulted in uniform output in
most cases.
- allocation error for on-the-fly triangulation
ENH: changed decomposed storage from DynamicList to plain faceList for
clearer allocation control and better overhead
ENH: downgrade error on type-mismatch to a warning
- Ensight data files generated by OpenFOAM will start with the name of
the data type (Eg, "scalar", "vector" etc), but this convention may
fail for data files that have been generated elsewhere.
- foamExec was removed as part of commit f308aa6174554096 but
overlooked the fact that it is partly still needed by foamJob.
When running in parallel, it is used to source the etc/bashrc env.
Reinstated a stripped down form, which has been relocated to
bin/tools directory (it should not be directly called by the user).
The previous version switching functionality has nonetheless be
dropped since it only worked only when a rigid naming convention for
OpenFOAM installations was followed.
ENH: add foamJob log=, -log-app, -no-log options, improved coding quality
- synchronization, reduction only makes sense on processor-coupled
patches. Since cyclic baffles are within a single processor domain,
they are not reduced. So need to skip the sanity test for these.
- the use of 'paraview --version' can be fail if the build host
doesn't have the necessary graphics. For this case, try to obtain
the ParaView API number from the associated include directory.
- the read offset missed the tag_ member entirely and thus the entire
particle information would be corrupt (incorrectly interpreted) as
well as potential violation of adjacent (trailing) memory locations.
- used fallback of 0 instead of the results time.
This discrepancy caused the case file to have two timesets that
only differed by the first (incorrect) entry.
- when running in serial but within a processor directory,
argList::globalPath() is to be used instead of Time.globalPath()
For other cases there is no difference.
- with -mcpu=native for automatic detection and -armpl for linking in
the performance libraries
STYLE: relocate -mcpu into compiler instead of compiler-flags (#1225)
pointNormals calculation gets triggered through processorfvPatches
so on processors that don't have these bypass this. This leads
to the global reduction hanging.
- in addition to managing different vendors and versions, it may also
be necessary or desirable to have a particular variant
(eg, profiling, release, etc).
Devise a new meaningful name for the variant and create a
corresponding wmake rule.
Eg, SYSTEMOPENMPI-profiling with a corresponding
"wmake/rules/linux64Gcc/mplibSYSTEMOPENMPI-profiling" file
that has suitable content for your system.
CONFIG: intel-mpi use intel64/ paths only for config and wmake rules (#1153)
- previously adjusted the config files, but missed the changes
required for the wmake rules too.
Now simply migrate to using "intel64/{include,bin,lib}"
instead of the older naming "{include,bin,lib}64"
These changes work since at least intel-mpi 2015 (5.x), but possibly
earlier as well
- was WM_PROJECT_API in the environment and FOAM_API in dictionaries.
Make these both consistently FOAM_API.
This is a non-breaking change, since the value of WM_PROJECT_API
(added in 1812) and/or FOAM_API is purely informative.
For the current correct values, always use
* foamEtcFile -show-api
* wmakeBuildInfo -show-api
- If using a non-clang compiler suite (gcc, intel, etc) the additional
lbraries required for mesa with llvm pipelines may not be found.
Provide a mesa_llvm configuration with in the 'vtk' config file.
Can use the usual types of settings
* mesa_llvm=llvm-4.0.1
* mesa_llvm=none
* mesa_llvm=system
- looks slightly messier without associative arrays, but improves
portability. Should now also work with dash.
STYLE: support wmakeBuildInfo -cmp and -check options as equivalent
Averages columns of cells for layered meshes.
For each patch face, calculates the average value of all cells attached in
the patch face normal direction, and then pushes the average value back
to all cells in the column.
Useful for channel-like cases where we want to average fields in the
spanwise direction.
Example of function object specification:
columnAverage1
{
type columnAverage;
libs ("libfieldFunctionObjects.so");
...
patches (front side);
fields (U p);
}
Where the entries comprise:
\table
Property | Description | Required | Default value
type | type name: fieldMinMax | yes |
patches | list of patches to collapse onto | yes |
fields | list of fields to process | yes |
\endtable
- this corresponds to 'never match', which may be useful in combination
with -constant selection.
Eg,
surfaceMeshTriangulate -constant -time none
selects only the constant entry and suppresses any automatic time loop
STYLE: adjust help for the standard -times option
- indicate that times can be comma or space separated, since this is
otherwise not apparent. Don't mention semicolon separators in the help
since that just adds even more clutter.
- support .vtp format for geometry, surface, line, cloud.
- use native reader for handling vtk, vtp, obj, stl surface files.
For other formats, use the MeshedSurface (the surfMesh lib) to
handle reading and Foam::vtk::Tools::Patch to handle the
conversion to vtkPolyData. This combination is more memory efficient.
- update tutorial case to include vtp surface geometry
- note that it does not actually triangulate unless necessary, should
probably receive a new name.
- use newer constructs for handling processor/non-processor patch
selection etc.
- for quantities such as face area/normals etc, it can be useful to
calculate directly and avoid the overhead of caching all the values.
STYLE: comments, use HashTable lookup() method in whichPoint()
- this allows more use of the runTimePostProcessing functionObject
that will fail more gracefully if the proper version could not be
built.
The dummy functionObject simply emits a message that it is not available.
- this is identical to either of these solutions:
* getEnv("FOAM_CASE")
* stringOps::expand("<case>")
but with a closer resemblance to argList or Time globalPath(),
which makes the intent clearer.
Avoids using raw strings in the caller, which improves compile-time checks.
Used in situations where a class has no derivation path or other
access to a time registry or command args.
- provide relativePath() for argList and for Time.
These are relative to the case globalPath().
Eg,
Info<< "output: " << runTime.relativePath(outputFile) << nl;
- partial solution for issue #1091
This generates file properties that are case-relative,
Eg,
plane0
{
p
{
file "<case>/postProcessing/plane0/1/p_plane0.vtk";
}
U
{
file "<case>/postProcessing/plane0/1/U_plane0.vtk";
}
}
This allows the case to be moved elsewhere and still find its files.
This functionality was previously added for vtkCloud, but now also
applies to streamLine, sampledSets and sampledSurfaces
- it is sufficient to provide the total number of times that findBinary()
failed instead of flooding the screen with messages
Full verbose warnings still emitted when debugging is on.
- now use findEtcEntry() instead to handle file or directory.
Added findEtcEntries(), which provides provides a common code basis
for findEtcDirs(), findEtcFiles() ...
- this simplifies use of a unified test for directory or file.
fileName::Type what = myfile.type(true, true);
if (what == FILE) ...
if (what == DIRECTORY) ...
- Use distinct bit values for fileName::Type, for possible use in
the future.
- related to issue #1121, since we need a more flexible way of
expanding file or directory.
An alternative would be to add checkGzip to Foam::exists() and
Foam::type() functions, but that would make the code there more
confusing and in the fileHandler classes.
- for some special cases we wish to mark command-line arguments as
being optional, in order to do our own treatment. For example,
when an arbitrary number of arguments should be allowed.
Now tag this situation with argList::noMandatoryArgs().
The argList::argsMandatory() query can then be used in any further
logic, including the standard default argument checking.
- with the new default check, can consolidate the special-purpose
"setRootCaseNonMandatoryArgs.H"
into the regular
"setRootCase.H"
- revert to a simple "setRootCase.H" and move all the listing related
bits to a "setRootCaseLists.H" file. This leaves the information
available for solvers, or whoever else wishes, without being
introduced everywhere.
- add include guards and scoping to the listing files and rename to
something less generic.
listOptions.H -> setRootCaseListOptions.H
listOutput.H -> setRootCaseListOutput.H
- Now also responds to the contents of the trigger file,
processing action= contents similar to used with external coupling.
Previously it only handled an action that was defined in the
dictionary. With this update, the user can chose a diferent action
simply by echoing the appropriate action string into the trigger
file.
- similar to the foamEtcFile script -mode=... option, the specific
search location (user/group/other) can now also specified for
string expansions and as a numerical value for etcFile()
For example, if searching for group or other (project) controlDict,
but not wishing to see the user controlDict:
1. foamEtcFile -mode=go controlDict
2. fileName dictFile("<etc:go>/controlDict");
dictFile.expand();
3. etcFile(controlDict, false, 0077);
The default behaviour for searching all contexts is unchanged.
1. foamEtcFile controlDict
2. fileName dictFile("<etc>/controlDict");
dictFile.expand();
3. etcFile(controlDict);
- the local third-party headers are to be searched before any MPI
include directories. This stops the situation where an mpi-specific
version of ptscotch.h is installed into the MPI directories.
This "system" version may well have a different SCOTCH_Num size
(32 bit vs 64 bit) from the third-party library etc.
- change previous default (convert all faceZones unless -noFaceZones
specified) with the default behaviour to only convert face zones on
request.
- uses the '-faceZones' option as per foamToEnsight
- the result of lsof, which is used in the etc/cshrc to locate the
installation, may contain trailing information about host and mount
point.
There is also a moderate concern with people sourcing the
file indirectly with their own version in the same directory.
For example, a 'etc/cshrc-site' that actually sources 'etc/cshrc'.
This leads to multiple matches in the lsof output, so we only take
the first one, stop there and hope they didn't do something even
trickier.
- the counterpart to floatVector, doubleTensor, which can be useful
for connecting to programs that always expect double precision for
the arguments, when using single-precision for OpenFOAM itself.
Eg,
doubleVector pos = ...;
vtkcamera->SetPosition(pos.v_);
- prefer this to using the OPENFOAM define since this improves the
internal consistency with the build information.
The API information could change between builds without the
etcFiles.C being recompiled whereas the value of
Foam::foamVersion::api is force updated during the build (triggers
recompilation of globals.Cver)
Reports the min|max|average AMI weights to text file and optionally
writes VTK surfaces of the sum of the weights, and mask field for
ACMI patches.
Example usage:
AMIWeights
{
type AMIWeights;
libs ("libfieldFunctionObjects.so");
writeControl writeTime;
writeFields yes;
}
Reference:
Comte-Bellot, G., and Corrsin, S., "Simple Eulerian Time Correlation of
Full- and Narrow-Band Velocity Signals in Grid-Generated, 'Isotropic'
Turbulence," Journal of Fluid Mechanics, Vol. 48, No. 2, 1971,
pp. 273–337.
- now placed under postProcessing/checkMesh and postProcessing/checkAMI,
respectively.
Output files are now also tagged with the id of the patch, in case
there are multiple AMI patches in use.
- the problem occurred when running the writers in a parallel solver
or utility but requesting output on the master only.
Adjusted the logic to avoid globalIndex for these cases.
Previously the if (parallel_) checks were happening later, after the
globalIndex had already been created.
- use cellCentres() instead of volField equivalent for vtk conversion
- make looping variables more consistent
- centralize the transcription of OpenFOAM -> vtk tuples
The freestreamFvPatchField previously employed a fixed value when supplying
the inlet values. This commit extends the BC so that users can use another
patch to supply the values via the new freestreamBC entry, e.g. to set the
velocity to an atmospheric boundary layer profile:
inlet
{
type freestream;
freestreamBC
{
type atmBoundaryLayerInletVelocity;
flowDir (1 0 0);
zDir (0 0 1);
Uref 20;
Zref 20;
z0 uniform 0.1;
zGround uniform 935;
}
}
The earlier specification is also maintained for backwards compatibility, e.g.
inlet
{
type freestream;
freestreamValue uniform (300 0 0);
}
- provide default WM_DIR if not already set, to improve robustness if a
reduced environment is used
- add etc/ to WM_PROJECT_SITE search. This makes the site directory
structure consistent with the OpenFOAM structure.
Eg,
WM_PROJECT_SITE/etc/..
WM_PROJECT_SITE/bin/..
WM_PROJECT_SITE/platforms/..
- Don't set/export WM_OSTYPE. The default is POSIX and is properly
defaulted throughout, including in CMakeLists-OpenFOAM.txt (also for
Catalyst)
- Use the OPENFOAM define (eg, 1806, 1812), which normally corresponds
to a major release, to define an API level. This remains consistent
within a release cycle and means that it is possible to manage
several sub-versions and continue to have a consistent lookup.
The current API value is updated automatically during the build
and cached as meta data for later use, even when the wmake/ directory
is missing or OpenFOAM has not yet be initialized.
The version information reported on program start or with -help
usage adjusted to reflect this. The build tag from git now also
carries the date as being more meaningful to trace than a hash
value.
- Update etc/bashrc and etc/cshrc to obtain the project directory
directly instead of via its prefix directory. The value obtained
corresponds to an absolute path, from which the prefix directory
can be obtained.
The combination of these changes removes the reliance on any
particular directory naming convention.
For example,
With an 1812 version (API level):
WM_PROJECT_VERSION=myVersion
installed as /some/path/somewhere/openfoam-mySandbox
This makes the -prefix, -foamInstall, -projectVersion, -version
values of foamEtcFiles, and similar entries for foamConfigurePaths
superfluous.
WM_PROJECT_INST_DIR is no longer required or used
ENH: improve handling and discovery of ThirdParty
- improve the flexibility and reusability of ThirdParty packs to cover
various standard use cases:
1. Unpacking initial release tar files with two parallel directories
- OpenFOAM-v1812/
- ThirdParty-v1812/
2. With an adjusted OpenFOAM directory name, for whatever reason
- OpenFOAM-v1812-myCustom/
- openfoam-1812-other-info/
3. Operating with/without ThirdParty directory
To handle these use cases, the following discovery is used.
Note PROJECT = the OpenFOAM directory `$WM_PROJECT_DIR`
PREFIX = the parent directory
VERSION = `$WM_PROJECT_VERSION`
API = `$WM_PROJECT_API`, as per `foamEtcFiles -show-api`
0. PROJECT/ThirdParty
- for single-directory installations
1. PREFIX/ThirdParty-VERSION
- this corresponds to the traditional approach
2. PREFIX/ThirdParty-vAPI
- allows for an updated value of VERSION (eg, v1812-myCustom)
without requiring a renamed ThirdParty. The API value
would still be '1812' and the original ThirdParty-v1812/
would be found.
3. PREFIX/ThirdParty-API
- this is the same as the previous example, but using an unadorned
API value. This also makes sense if the chosen version name also
uses the unadorned API value in its naming
(eg, 1812-patch190131, 1812.19W03)
4. PREFIX/ThirdParty-common
- permits maximum reuse for various versions, but only for
experienced user who are aware of potential version
incompatibilities
Directory existence is checked as is the presence of an Allwmake file
or a platforms/ directory. This reduces the potential of false positive
matches and limits the selection to directories that are either
with sources (has the Allwmake file), or pre-compiled binaries (has
the platforms/ directory).
If none of the explored directories are found to be suitable,
it reverts to using a PROJECT/ThirdParty dummy location since
this is within the project source tree and can be trusted to
have no negative side-effects.
ENH: add csh support to foamConfigurePaths
- this removes the previously experienced inconsistence in config file
contents.
REMOVED: foamExec
- was previously used when switching versions and before the
bashrc/cshrc discovery logic was added. It is now obsolete.
- Uses the user-specified value for outputTemperature:
{
type externalCoupledTemperature;
outputTemperture fluid; // or wall;
}
Otherwises uses 'wall' as a default (for compatibility) and emits a
warning.
The T.out header now reflects the type of output. Eg,
# Values: area Tfluid qDot htc
- tutorials based on squareBend used Default_Boundary_Region explicitly
defined since they predated the defaultPatch renaming (2008).
The name 'Default_Boundary_Region' was for convenience as the default
name when converting to PROSTAR or CCM formation, but can now be
changed to something more generic.
- define wall boundary conditions for squareBend using a general regex
to allow future splitting of wall types by name.
- check if the first argument corresponds to an OpenFOAM value for
'true' (as per Switch).
True == 't', 'y', 'true', 'yes', 'on'. Everything else is not true.
- when the first argument is '-dict', it initializes the value
with a query via foamDictionary.
Eg,
isTrue -dict mydict -entry parallel
==> value=$(foamDictionary mydict -entry parallel -value)
isTrue $value
a missing entry is silently treated as false.
ENH: add getNumberOfPatchFaces function in RunFunctions
- simple extraction of nFaces from boundary file for given patch/region
- append the commit hash value with the commit date when creating
the build string information and drop the version prefix.
This provides an immediate overview of when the code was last
changed. The prefixed version information can be dropped from
the build string, since it is readily available in other forms.
- was PREFIX/site, now PROJECT/site
This avoids several issues when installing OpenFOAM in clusters
without an intermediate OpenFOAM-specific installation prefix.
The 'site' directory may have a reserved meaning in these situations
and it is undesirable to 'leak' upwards into the parent directory to
look for configuration files.
Placing the default within the project directory avoids this.
Alternative locations can be given via the WM_PROJECT_SITE variable.
- removed reliance on ParaView_INCLUDE_DIR variable for conveying the
major.minor version information when compiling. This can be somewhat
fragile and also adds variable that is an unnecessary when running
(only used when compiling).
Instead use `have_pvplugin_support` function in paraviewFunctions
wmake script to determine the maj.min from the PV_PLUGIN_PATH
since we have already defined the output path there with paraview
maj.min numbering.
Can now build with paraview from the operating system,
provided that it has develop headers available.
ParaView_VERSION=system
In the etc/config.sh/paraview setup, the maj.min is taken from
the corresponding `paraview --version` output and used when
defining the PV_PLUGIN_PATH.
During the build, the include path taken from `paraview-config`
for a system installation, from the guess installation root
of the paraview binary, or ParaView_DIR otherwise.
NB: using a system ParaView for building runTimePostProcessing is unsupported.
- these types of builds appear to have various library resolution issues
(eg, libexpat not being loaded). Additionally, the build logic does
not yet cover this type of use case.
- cfindObject() for const pointer access.
- getObject() for mutable non-const pointer access, similar to the
objectRegistry::getObjectPtr()
- cfindObject(), findObject(), getObject() with template type access
to also check the headerClassName.
For example,
cfindObject("U") -> good
cfindObject<volVectorField>("U") -> good
cfindObject<volScalarField>("U") -> nullptr
This allows inversion of looping logic.
1) Obtain the names for a particular Type
for (const word& objName : objs.sortedNames<Type>())
{
const IOobject* io = objs[objName];
...
}
2) Use previously obtained names and apply to a particular Type
for (const word& objName : someListOfNames)
{
const IOobject* io = objs.cfindObject<Type>(objName);
if (io)
{
...
}
}
- if FOAM_EXT_LIBBIN is unset and some scripts set this to /usr/lib*
as a fallback (eg, to avoid an undefined value) this will cause a
system library to be found before appropriate *_ARCH_PATH entry.
This was noticed during a scotch compilation without third-party:
resulting in the system library (/usr/lib64/libscotch.so) to be found
instead of the SCOTCH_ARCH_PATH location
(/usr/lib64/mpi/gcc/openmpi/lib64/).
Simply changing the search order doesn't work for use, since we wish
to retain a preference for any dynamic libraries discovered in a
real FOAM_EXT_LIBBIN.
Circumvent these issues by only taking libraries from
FOAM_EXT_LIBBIN if it also points to a location within ThirdParty.
- can now things like ref(), boundaryFieldRef(), primitiveFieldRef()
with an optional argument that avoids triggering any update events
Instead of
Field<Type>& iF = const_cast<Field<Type>&>(fld.primitiveField());
can now write
Field<Type>& iF = fld.primitiveFieldRef(false);
or simply
auto& iF = fld.primitiveFieldRef(false);
- can be used, for example, to visualize all wall cells - for quality
or other purposes - without requiring an intermediate faceSet for
the selection. Request arising from pending merge !213.
- now supports a parcel selection mechanism like vtkCloud,
giving the ability to select a subset of parcels.
For example, a given stride, or removal of parcels with a small
diameter.
Eg,
dataCloud output Time: 3.2
Applying parcel filtering to 994 parcels
- add stride 4
- subtract field U : (less 0.2)
After filtering using 214/994 parcels
- add output precision control for dataCloud
- vtkWrite with moving mesh was not updated the subsets properly,
which caused it to crash.
- foamToVTK -overwrite ignored for single region cases,
was working for multi-region cases
- minor documentation changes
Description
Calculates the energy spectrum for a structured IJK mesh
Usage
Example of function object specification:
energySpectrum1
{
type energySpectrum;
libs ("libfieldFunctionObjects.so");
}
Where the entries comprise:
\table
Property | Description | Required | Default value
type | type name: energySpectrum | yes |
log | write info to standard output | no | yes
\endtable
Output data is written to the file \<timeDir\>/energySpectrum.dat
- Added quoting to handle spaces in environment values in commit 50852b33
(#1007, #1008). However, quoting is only needed for eval mode.
In regular mode, quoting should not be part of the output, instead it
should be done on the caller side.
- provide edit for adjusting the ThirdParty and fallback site variables.
This is useful when packaging into a single directory, and possibly
without any ThirdParty dependencies.
- support '-prefix' (similar to auotconfig) as an alternative to
'-foamInstall'. Use this prefix to set the prefix directly.
Bypasses and disables the bash sourcing magic.
- Within strings it is preferable to use the "<etc>" instead.
Most use cases for the old "~OpenFOAM" expansion have been obsoleted
by the #includeEtc directive.
- use std::string instead of c-string for the string constants
- centralize some definitions of resources into foamVersion.H
Now expose some of the hard-coded values used in foamEtcFiles()
so that they can be known or even overridden as required.
Relocate to src/OpenFOAM/include as a constant location.
- uses wmake, without OpenFOAM libraries.
The application and libray serve as a minimal test case for wmake,
but can also be used to generate a minimal library/executable pair
target for testing of packaging etc.
- For compatibility, access to the old global names is provided via
macros
#define FOAMversion foamVersion::version
#define FOAMbuild foamVersion::build
#define FOAMbuildArch foamVersion::buildArch
- this isolation makes it easier to provide additional scoped methods
for dealing with version related information. Eg, printBuildInfo()
- foamVersion.H now includes stdFoam.H for consistent use
of compatibility compiler defines.
- move forward declaration of Detail, Module namespaces to stdFoam.H
- doxygen documentation of Foam namespace in stdFoam.H
- generalize output text wrapping, use for usage notes
- add -help-man option for generating manpage content for any OpenFOAM
application or solver.
bin/tools/foamCreateManpage as helper
- The changes in foamCleanPath introduced for issues (#1007, #1008)
include quoted output of the cleaned environment variable.
When used in foamCreateModuleInclude, the quotes make their way
into the final environment. Avoid this by using the -sh-env
eval format instead.
- add environment extraction of MANPATH changes
- 'unfriend' operators on dimensionSet, since they operate without
requiring access to non-public members.
- add missing invTransform() function for dimensionSet.
- make inv(const dimensionSet&) available as
operator~(const dimensionSet&), which can be used instead
of (dimless/ds).
- writing of dictionary entry with the name of the dimensionedType
suppressed if it is identical to the keyword.
This corresponds to the input requirements.
- deprecate dimensionedType constructors using an Istream in favour of
versions accepting a keyword and a dictionary.
Dictionary entries are almost the exclusive means of read
constructing a dimensionedType. By construct from the dictionary
entry instead of doing a lookup() first, we can detect possible
input errors such as too many tokens as a result of a input syntax
error.
Constructing a dimensionedType from a dictionary entry now has
two forms.
1. dimensionedType(key, dims, dict);
This is the constructor that will normally be used.
It accepts entries with optional leading names and/or
dimensions. If the entry contains dimensions, they are
verified against the expected dimensions and an IOError is
raised if they do not correspond. On conclusion, checks the
token stream for any trailing rubbish.
2. dimensionedType(key, dict);
This constructor is used less frequently.
Similar to the previous description, except that it is initially
dimensionless. If entry contains dimensions, they are used
without further verification. The constructor also includes a
token stream check.
This constructor is useful when the dimensions are entirely
defined from the dictionary input, but also when handling
transition code where the input dimensions are not obvious from
the source.
This constructor can also be handy when obtaining values from
a dictionary without needing to worry about the input dimensions.
For example,
Info<< "rho: " << dimensionedScalar("rho", dict).value() << nl;
This will accept a large range of inputs without hassle.
ENH: consistent handling of dimensionedType for inputs (#1083)
BUG: incorrect Omega dimensions (fixes#2084)
- use forwarding templates for the factory method
- avoid double use of dynamic_cast.
Don't need implicit use in isA<>, can use result directly
STYLE: updated iteration over HashTable of mesh objects
- was using coordinate-system and transform() which is the
local-to-global mapping, whereas it should be invTransform() which
is the global-to-local mapping
- this seems to be the only reliable means of obtaining the values.
Using typeName_() yields the wrong value.
Using the typeName causes initialization issues
(segfault when executing on some systems).
- support name filtering by class based on <Type> or predicates.
Eg,
objects.sortedNames<volScalarField>(namePattern);
vs objects.sortedNames(volScalarField::typeName, namePattern);
These can also be used directly for untyped name matching.
Eg,
objects.sortedNames<void>(namePattern);
Can also use a predicate:
objects.sortedNames(wordRe("vol.*Field"), namePattern);
objects.sortedNames
(
[](const word& clsName){ return clsName.startsWith("vol"); },
namePattern
);
- add IOobjectList::count() methods
- lookupClass<Type>() to use types instead of class variables.
- additional helpers for parallel: allNames(), checkNames()
- provide filterClasses() and filterObjects(), prune_0() method
forwarding to HashTable methods for easier access.
- in parameter form, check if it headerClassName() corresponds to the
specified class name
- in templated form, check if headerClassName() corresponds to the
Type:typeName value.
Specialization for <void> always returns true (ie, no checks)
- replace explicit use of word, wordRe, wordRes, wordHashSet as filters
with a MatchPredicate, since they all satisfy the requirements for
use a predicate. This change reduces code duplication, allows other
matcher types (eg, keyType) as well as lambda functions.
- add special treatment for a 'const char*' parameter
for lookupClass() and the now-deprecated single item lookup() method
to promote these parameters to 'word'.
- naming similar to objectRegistry, with unambiguous resolution.
The lookup() methods have different return types depending on the
calling parameter.
STYLE: use IOobjectListTemplates.C for implementations
- previously included as local definition within IOobjectList.C,
but will be adding more templated methods soon.
- adjust parameters (eg, matchName instead of matcher) to show their
function
ENH: handle objectRegistry::names<void>(...)
- this is equivalent to no Type restriction, and can be used when
filtering names. Eg,
obr.names<void>(wordRe..);
- Start brief descriptions with 'Deprecated(YYYY-MM)' so that it is
readily visible in the short method description. Consistent date
format (YYYY-MM), placed immediately after the \deprecated tag.
commit 3f9c7bf411
commit 3cf177e759
====
ENH: add geometric decomposition constraint (issue #921)
- geometric decomposition constraints may be used to prevent the
decomposition of regions of the mesh.
The geometric constraint is applied according to the face centres,
which define the connectivity between cells.
Specified in decomposeParDict
constraints
{
geometric
{
type geometric;
geometry
{
box1
{
type box;
min (-10 -10 -10);
max (1 1 1);
}
ball1
{
type sphere;
origin (-2 -2 1);
radius 1;
}
}
}
}
ENH: add 'grow' option for geometric decomposition constraint (issue #921)
- the 'grow' option includes an additional check to include cell faces
for any cell that already has two or more of its faces "unblocked".
This could indicate a connection over a corner, but does not distinguish
between connectivity introduced by the constraint and the connectivity
defined by other constraints.
ENH: geometric decomposition constraint using topoSetFaceSource (issue #921)
- replaced use of searchableSurface with a more general and
more efficient topoSetFaceSource instead.
Since searchableSurface is also available as a topoSetFaceSource,
there is no loss in functionality, but using topoSetFaceSource allow
directly looping over the faces without creating of an additional
List of volumeTypes.
This fixes the static-initialisation order problem - fieldTypes.C
referes to labelIOField etc. which are after it in Make/files and
hence the link order.
- now takes a const UList<T> as input and returns a List<T>
instead of trying to use the same ListType for both.
This avoids previously encountered issues when a UList was passed in.
- add specialized bitSet handling within subset(), where we can benefit
from faster traversal of sparse selections and have a better estimate
of the final output size.
- local token shifting was missing when getting the next file chunk
(while in the middle of parsing that text).
As well as adding the correct shifting, also tag the local buffer
with nullptr when it is done. Be extra paranoid and check the
raw buffer range before passing off to std::string.
- Default format is now XML binary (base64) instead of legacy format.
The old -xml option is redundant and ignored.
The new -legacy option can be used to force legacy output instead.
- Polyhedral decomposition is now off by default (old -poly is ignored).
The option -poly-decomp forces decomposition of polyhedrals into
primitive shapes.
- reduced memory footprint by reading and converting fields
successively.
- Creation of symlinks to processor files is no longer required or
desired. The old -noLinks option is ignored.
- Ignore -useTimeName option. Always number according to timeIndex.
- align input parameters and some of the behaviour with vtkWrite
The output is now postProcessing/<name> for similar reasoning as
mentioned in #866 - better alignment with other function objects, no
data collision with foamToEnsight output.
- separate controls for internal and boundary meshes
- can restrict conversion based on zone names, enclosing volumes,
bounding box.
- parallel output.
The output is now postProcessing/<name> for similar reasoning as
mentioned in #866 - better alignment with other function objects, no
collision with foamToVTK output.
- align the input parameters with those of vtkCloud so that we can
specify the ASCII precision and the padding width for the output
file names as well.
- emit TimeValue field, support file series generation
- support internal or boundary meshes, combining the result into a vtm
file.
- can restrict conversion based on zone names, enclosing volumes,
bounding box
- handle tmp fields in interpolate methods
- special method interpolateInternal() for creating a volume field
with zero-gradient treatment for patches from an internal field.
This method was previously also called interpolate(), but that
masked the ability to subset the internal field only.
Ensight output needs the volume field:
uses interpolateInternal().
VTK output has separate handling of internal and patch fields:
uses interpolate().
ENH: added fvMeshSubset mesh() method for baseMesh or subMesh.
- simplies coding when the fvMeshSubset may or may not be in active use.
ENH: update foamToEnsight to use newer methods in wrapped form
- static interpolate functions with renaming for manual use with
fvMeshSubset (when fvMeshSubsetProxy may be too limiting in
functionality)
- helps reduce clutter in the topoSetDict files.
Caveats when using this.
The older specification styles using "name" will conflict with the
set name. Eg,
{
name f0
type faceSet;
action add;
source patchToFace;
sourceInfo
{
name inlet;
}
}
would flattened to the following
{
name f0
type faceSet;
action add;
source patchToFace;
name inlet;
}
which overwrites the "name" used for the faceSet.
The solution is to use the updated syntax:
{
name f0
type faceSet;
action add;
source patchToFace;
patch inlet;
}
- faceBitSet, pointBitSet and faceBoolSet (similar to cellBitSet)
* allows topo sources in a wider variety of places.
* With copy or move constructors.
- cylinderToPoint, searchableSurfaceToFace, searchableSurfaceToPoint,
sphereToFace, sphereToPoint sources
- optional innerRadius for sphere and cylinder sources to treat as hollow.
- support "sets" as well as "set" for cellToCell, faceToFace... sources.
* convenience and avoids writing the set during processing.
- now applicable to labelLists.
Note:
in some situations it will be more efficient to use
Foam::identity() directly. Eg,
globalIndex globalCells(mesh.nCells());
...
labelList cellIds
(
identity(globalCells.localSize(), globalCells.localStart())
);
- previously simply read files until the input stream went bad and no
more lines could be read. With the more stringent checking of
values read (commit 0ce7e364a4) this approach causes problems.
Use the underlying tokenizer instead to decide about termination.
- for space-savings the VTK fields are normally written as 'float'
rather than double. When a double field contains very large values,
these can result in a overflow when converted to float.
Now trap these with the appropriate numeric limits.
No warning when these values are clipped: it should be readily
apparent from the output.
ENH: handle symmTensor component swapping directly on VTK output.
- use VTK output routines in vtkSurfaceWriter to benefit from the
above changes
- a failed attempt to read a value (eg, word, label, scalar) from a
stream now always provokes a FatalIOError.
This helps avoid some difficult to trace input errors.
- old 'DELETE' enum was easily confused with 'REMOVE', which removes
the set, not the elements from the set.
- provide corresponding subtractSet() method
STYLE: HashSet set/unset instead of insert/erase methods in topoSetSource
- simplifies switching to/from bitSet storage
- make hasFaceId a top-level virtual method and remove keepIds
equivalent from sampledTriSurfaceMesh. This makes the property
available without casting.
- New sampling type 'none'.
Can be used to temporarily disable a sampling surface definition,
or to provide boilerplate for overwriting later.
- as part of the cleanup of dictionary access methods (c6520033c9)
made the dictionary class single inheritance from IDLList<entry>.
This eliminates any ambiguities for iterators and allows
for simple use of range-for looping.
Eg,
for (const entry& e : topDict))
{
Info<< "entry:" << e.keyword() << " is dict:" << e.isDict() << nl;
}
vs
forAllConstIter(dictionary, topDict, iter))
{
Info<< "entry:" << iter().keyword()
<< " is dict:" << iter().isDict() << nl;
}
- more dictionary-like methods, enforce keyType::LITERAL for all
lookups to avoid any spurious keyword matching.
- new readEntry, readIfPresent methods
- The get() method replaces the now deprecate lookup() method.
- Deprecate lookupOrFailsafe()
Failsafe behaviour is now an optional parameter for lookupOrDefault,
which makes it easier to tailor behaviour at runtime.
- output of the names is now always flatted without line-breaks.
Thus,
os << flatOutput(someEnumNames.names()) << nl;
os << someEnumNames << nl;
both generate the same output.
- Constructor now uses C-string (const char*) directly instead of
Foam::word in its initializer_list.
- Remove special enum + initializer_list constructor form since
it can create unbounded lookup indices.
- Removd old hasEnum, hasName forms that were provided during initial
transition from NamedEnum.
- Added static_assert on Enum contents to restrict to enum or
integral values. Should not likely be using this class to enumerate
other things since it internally uses an 'int' for its values.
Changed volumeType accordingly to enumerate on its type (enum),
not the class itself.
- this helps for many cases outlined in issue #1007, but can also be
useful when simply using symlinks for shorter or reorganized
directory structures.
Update of overRhoPimpleDyMFoam and overInterDyMFoam solvers.
Adding corresponding tutorials with best possible settings
The main effort was put on reducing pressure spikes as the
stencil change with hole cells on the background mesh.
- writes positions and a single field (eg, diameter) in plain ASCII files,
suitable for importing in a spreadsheet or manipulation with
scripting tools.
- code integrated from
https://develop.openfoam.com/Community/OpenFOAM-addOns
New name: findObject(), cfindObject()
Old name: lookupObjectPtr()
Return a const pointer or nullptr on failure.
New name: findObject()
Old name: --
Return a non-const pointer or nullptr on failure.
New name: getObjectPtr()
Old name: lookupObjectRefPtr()
Return a non-const pointer or nullptr on failure.
Can be called on a const object and it will perform a
const_cast.
- use these updated names and functionality in more places
NB: The older methods names are deprecated, but continue to be defined.
- these currently only with bool parameters, but the return value should
nonetheless always be a bool value:
andOp(), orOp(), lessOp(), lessEqOp(), greaterOp(), greaterEqOp()
- renamed the unused eqEqOp() to equalOp() for naming consistency with
the equal() global function.
ENH: equalOp() specialization for scalars
- function object version of the equal() function.
The default constructor uses the same tolerance (VSMALL),
but can also supply an alternative tolerance on construction.
Description
Calculates the spatial minimum and maximum extents of a field
The extents are derived from the bound box limits after identifying
the locations where field values exceed the user-supplied threshold
value.
Usage
Example of function object specification:
fieldExtents1
{
type fieldExtents;
libs ("libfieldFunctionObjects.so");
...
writeToFile yes;
log yes;
fields (alpha);
threshold 0.5;
patches ();
}
Where the entries comprise:
Property | Description | Required | Default
type | type name: fieldExtents | yes |
writeToFile | write extents data to file | no | yes
log | write extents data to standard output | no | yes
internalField | Process the internal field | no | yes
threshold | Field value to identify extents boundary | yes |
referencePosition | Reference position | no | (0 0 0)
fields | list of fields to process | yes |
patches | list of patches to process | no | <all>
Output data is written to the file \<timeDir\>/fieldExtents.dat
Note
For non-scalar fields, the magnitude of the field is employed and
compared to the threshold value.
- with the 'cwd' optimization switch it is possible to select the
preferred behaviour for the cwd() function.
A value of 0 causes cwd() to return the physical directory,
which is what getcwd() and `pwd -P` return.
Until now, this was always the standard behaviour.
With a value of 1, cwd() instead returns the logical directory,
which what $PWD contains and `pwd -L` returns.
If any of the sanity checks fail (eg, PWD points to something other
than ".", etc), a warning is emitted and the physical cwd() is
returned instead.
Apart from the optical difference in the output, this additional
control helps workaround file systems with whitespace or other
characters in the directory that normally cause OpenFOAM to balk.
Using a cleaner symlink elsewhere should skirt this issue.
Eg,
cd $HOME
ln -s "/mounted volume/user/workdir" workdir
cd workdir
# start working with OpenFOAM
- foamCleanPath now only splits the environment variable on ':', which
allows other directories with spaces or '(..)' etc to pass through
without major issue.
- The filter arguments are split on whitespace, colons or semi-colons.
- use keyType::option enum to consolidate searching options.
These enumeration names should be more intuitive to use
and improve code readability.
Eg, lookupEntry(key, keyType::REGEX);
vs lookupEntry(key, false, true);
or
Eg, lookupEntry(key, keyType::LITERAL_RECURSIVE);
vs lookupEntry(key, true, false);
- new findEntry(), findDict(), findScoped() methods with consolidated
search options for shorter naming and access names more closely
aligned with other components. Behave simliarly to the
methods lookupEntryPtr(), subDictPtr(), lookupScopedEntryPtr(),
respectively. Default search parameters consistent with lookupEntry().
Eg, const entry* e = dict.findEntry(key);
vs const entry* e = dict.lookupEntryPtr(key, false, true);
- added '*' and '->' dereference operators to dictionary searchers.
- use the dictionary 'get' methods instead of readScalar for
additional checking
Unchecked: readScalar(dict.lookup("key"));
Checked: dict.get<scalar>("key");
- In templated classes that also inherit from a dictionary, an additional
'template' keyword will be required. Eg,
this->coeffsDict().template get<scalar>("key");
For this common use case, the predefined getXXX shortcuts may be
useful. Eg,
this->coeffsDict().getScalar("key");
- not used by the ISstream parser, but suitable for other parsing
methods where true/false concept should be distinguishable from
integer values.
Only constructed via the token::boolean() static method, not
directly assignable.
This avoids any potential ambiguities with label.
- this also removes the '-newTimes' option cruft from appearing
everywhere. reconstructPar and redistributePar are unaffected by this
since they define their own -newTimes option independently.
- same as !isPattern(), but can be more readable.
- add wordRe enum state 'UNKNOWN', which has the identical value as
'DETECT' but used for a return value.
- makes an easier overview of the rotation matrix coefficients
(issue #863).
Provided as a distinct commit for easier examination of the lines changed.
Previously the coordinate system functionality was split between
coordinateSystem and coordinateRotation. The coordinateRotation stored
the rotation tensor and handled all tensor transformations.
The functionality has now been revised and consolidated into the
coordinateSystem classes. The sole purpose of coordinateRotation
is now just to provide a selectable mechanism of how to define the
rotation tensor (eg, axis-angle, euler angles, local axes) for user
input, but after providing the appropriate rotation tensor it has
no further influence on the transformations.
--
The coordinateSystem class now contains an origin and a base rotation
tensor directly and various transformation methods.
- The origin represents the "shift" for a local coordinate system.
- The base rotation tensor represents the "tilt" or orientation
of the local coordinate system in general (eg, for mapping
positions), but may require position-dependent tensors when
transforming vectors and tensors.
For some coordinate systems (currently the cylindrical coordinate system),
the rotation tensor required for rotating a vector or tensor is
position-dependent.
The new coordinateSystem and its derivates (cartesian, cylindrical,
indirect) now provide a uniform() method to define if the rotation
tensor is position dependent/independent.
The coordinateSystem transform and invTransform methods are now
available in two-parameter forms for obtaining position-dependent
rotation tensors. Eg,
... = cs.transform(globalPt, someVector);
In some cases it can be useful to use query uniform() to avoid
storage of redundant values.
if (cs.uniform())
{
vector xx = cs.transform(someVector);
}
else
{
List<vector> xx = cs.transform(manyPoints, someVector);
}
Support transform/invTransform for common data types:
(scalar, vector, sphericalTensor, symmTensor, tensor).
====================
Breaking Changes
====================
- These changes to coordinate systems and rotations may represent
a breaking change for existing user coding.
- Relocating the rotation tensor into coordinateSystem itself means
that the coordinate system 'R()' method now returns the rotation
directly instead of the coordinateRotation. The method name 'R()'
was chosen for consistency with other low-level entities (eg,
quaternion).
The following changes will be needed in coding:
Old: tensor rot = cs.R().R();
New: tensor rot = cs.R();
Old: cs.R().transform(...);
New: cs.transform(...);
Accessing the runTime selectable coordinateRotation
has moved to the rotation() method:
Old: Info<< "Rotation input: " << cs.R() << nl;
New: Info<< "Rotation input: " << cs.rotation() << nl;
- Naming consistency changes may also cause code to break.
Old: transformVector()
New: transformPrincipal()
The old method name transformTensor() now simply becomes transform().
====================
New methods
====================
For operations requiring caching of the coordinate rotations, the
'R()' method can be used with multiple input points:
tensorField rots(cs.R(somePoints));
and later
Foam::transformList(rots, someVectors);
The rotation() method can also be used to change the rotation tensor
via a new coordinateRotation definition (issue #879).
The new methods transformPoint/invTransformPoint provide
transformations with an origin offset using Cartesian for both local
and global points. These can be used to determine the local position
based on the origin/rotation without interpreting it as a r-theta-z
value, for example.
================
Input format
================
- Streamline dictionary input requirements
* The default type is cartesian.
* The default rotation type is the commonly used axes rotation
specification (with e1/e2/3), which is assumed if the 'rotation'
sub-dictionary does not exist.
Example,
Compact specification:
coordinateSystem
{
origin (0 0 0);
e2 (0 1 0);
e3 (0.5 0 0.866025);
}
Full specification (also accepts the longer 'coordinateRotation'
sub-dictionary name):
coordinateSystem
{
type cartesian;
origin (0 0 0);
rotation
{
type axes;
e2 (0 1 0);
e3 (0.5 0 0.866025);
}
}
This simplifies the input for many cases.
- Additional rotation specification 'none' (an identity rotation):
coordinateSystem
{
origin (0 0 0);
rotation { type none; }
}
- Additional rotation specification 'axisAngle', which is similar
to the -rotate-angle option for transforming points (issue #660).
For some cases this can be more intuitive.
For example,
rotation
{
type axisAngle;
axis (0 1 0);
angle 30;
}
vs.
rotation
{
type axes;
e2 (0 1 0);
e3 (0.5 0 0.866025);
}
- shorter names (or older longer names) for the coordinate rotation
specification.
euler EulerRotation
starcd STARCDRotation
axes axesRotation
================
Coding Style
================
- use Foam::coordSystem namespace for categories of coordinate systems
(cartesian, cylindrical, indirect). This reduces potential name
clashes and makes a clearer declaration. Eg,
coordSystem::cartesian csys_;
The older names (eg, cartesianCS, etc) remain available via typedefs.
- added coordinateRotations namespace for better organization and
reduce potential name clashes.
This fix changes how the intersections loop ignores previously
intersected faces. It now marks them by their index so that subsequent
iterations ignore them.
Before this change, after an intersection was found the start point was
advanced by a small amount to move the past the intersection. The
problem with this was if multiple boundary faces or the end point were
in close proximity to the intersection then the move forward might span
them. This could lead to intersections being missed or counted multiple
times, in some cases indefinitely.
Based on a patch contributed by Mattijs Janssens
Resolves bug report https://bugs.openfoam.org/view.php?id=1147
- Can now retrieve or set a column/row of a tensor.
Either compile-time or run-time checks.
Get
t.col<1>(); t.col(1);
t.row<1>(); t.row(1);
Set
t.col<1>(vec); t.col(1,vec);
t.row<1>(vec); t.row(1,vec);
The templated versions are compile-time checked
t.col<3>();
t.col<3>(vec);
The parameter versions are run-time checked
t.col(3);
t.col(3,vec);
ENH: provide named access to tensor/tensor inner product as inner()
Helper function to calculate the current face area vs the area returned
from the current point locations. Useful for ACMI-type baffles where we
scale the face areas without moving points.
- nBoundaryFaces() is often used and is identical to
(nFaces() - nInternalFaces()).
- forward the mesh nInternalFaces() and nBoundaryFaces() to
polyBoundaryMesh as nFaces() and start() respectively,
for use when operating on a polyBoundaryMesh.
STYLE:
- use identity() function with starting offset when creating boundary maps.
labelList map
(
identity(mesh.nBoundaryFaces(), mesh.nInternalFaces())
);
vs.
labelList map(mesh.nBoundaryFaces());
forAll(map, i)
{
map[i] = mesh.nInternalFaces() + i;
}
- this provides internal consistency and allows direct use of the
coordinate angle with sin(), cos() functions.
It eliminates potential issues that could otherwise arise from
alternative user input.
Eg, in mixerFvMesh it would have previously been possible to specify
the coordinate system to use degrees or radians, but these units were
not checked when determining the tangential sweep positions.
NOTE: this may represent a breaking change if user coding has been
relying on cylindrical coordinate system in degrees.
Previously had 3 possibilities for handling exposed internal faces
1. use default "oldInternalFaces"
2. specify -patch, to use the specified (existing) patch
3. specify -patches, to use the geometrically closest patches
Now relaxed the restriction on -patch to allow specification of a new
(not yet existing) patch name. This improves flexibility, but won't
catch typing mistakes.
Harmonize behaviour of -patches and -patch. When -patches is used to
specify a single, non-regex patch name, it now behaves identically to
-patch. Since the getList handling for options already allows special
treatment for single parameter lists, the following will work
identically:
subsetMesh -patch patch0
subsetMesh -patches patch0
subsetMesh -patches '( patch0 )'
In the future it might be reasonable to fully combine the behaviour of
'-patch' and '-patches' and treat them as aliases for each other.
ENH: support subsetMesh on a cellZone.
- when the '-zone' option is specified, the command argument is treated
as the name (or names) of cellZones to be selected instead of as the
name of the cellSet.
The command argument can be a single word, regex, or list of
word/regex.
Eg,
subsetMesh -zone -patch mypatch mixer
subsetMesh -zone -patch mypatch '(mixer "moving.*" )'
STYLE: simplify set handling and other code cleanup in subsetMesh
Using: OpenFOAM-plus (see www.OpenFOAM.com)
Build: plus-7ab57cc5d014 (OPENFOAM=1807)
Arch: LSB;label=32;scalar=64
- This can be useful for development versions, or when the version
at build time uses some other naming scheme (#1010)
- 'signed' input parameter only mandatory for distance > 0.
A distance <= 0 is always signed and the input parameter is ignored.
- Use normal distance when distance == 0. This has no effect when
the surface has no open edges, but improves on rounding issues
around the zero crossing when the surface has open edges.
This may still need future revisiting.
- use parallel list writing, beginDataArray methods.
- use static_assert to restrict conversion of non-label integral types
- cache .vtp.series information by fileName instead of by cloud name.
This issues if the output directory changes, and simplifies code.
ENH: emit TimeValue in files generated by vtkCloud
- additional information for passing to ParaView
ENH: vtkCloud output to postProcessing/ (issue #866)
- better alignment with other function objects, no collision with
foamToVTK output.
- avoid duplicate code by relocating cellZone selection and bounding box
sub-selection into cuttingPlane and cuttingSurfaceBaseSelection.
Allows reuse by inherited classes (sampledPlane, surfMeshSamplePlane).
- takes two general actions:
1. orient edge in canonical direction (positive gradient) and detect
any edge intersection.
2. edge intersection alpha (0-1)
- refactor into a cuttingSurfaceBase intermediate class with the
actions as templated parameters rather than function pointers. This
allows the use of lambda functions with captures from the caller.
- The test condition
[ -n "$cur" -a ... ]
fails if $cur starts with '-le', which bash interprets as a further
test op. Splitting the test condition solves the problem:
[ -n "$cur" ] && [ ... ]
- Since the local edges are oriented according to the gradient,
they can also be used to determine the correct face orientation.
This generalizes the algorithm for future reuse.
- Provides a means of accumulating file entries for generating vtm
by accumulate blocks, datasets and writing them later.
Only a single block depth is currently supported and the methods
are kept fairly simple.
- Output formats such as vtp, vtu follow a particular internal data
structure (HEAD, FIELD_DATA, PIECE, CELL_DATA/POINT_DATA) and other
output conventions. This writer base tracks these expected output
states internally to help avoid logic errors in the callers.
- parallel list output for foamVtkOutput
- simplified '.series' file output
- beginDataArray() method instead of openDataArray() + closeTag()
since this seems to be the most common use anyhow.
With an optional argument for leaving the tag open, this works the
same as openDataArray() which may be deprecated in the future.
- begin/end methods for CellData, PointData, FieldData (commonly used)
- templating parameters for file headers, content version,
legacy fields. This improves coding robustness and convenience of use.
- use formatter and higher-level methods for legacy output
- attribute quoting character now part of the formatter itself
instead of as an argument for xmlAttr().
Toggle with quoting() method.
- pair-wise processing of xml attributes, which also allows them to be
passed as optional entries when creating an xml tag.
- xmlComment with multiple arguments
- allows cell point labels will use global numbering, but only for
unmerged points. We'd ideally like to avoid point merging per se,
and instead use VTK point blanking instead (as required).
This approach allows parallel collation of the output into a single
piece directly.
- there were previously no hashing mechanisms for lists so they
would fall back to the definition for primitives and hash the
memory location of the allocated List object.
- provide a UList::Hash<> sub-class for inheritance, and also a global
specialization for UList<T>, List<T> such that the hash value for
List<List<T>> cascades properly.
- provide similar function in triFace to ensure that it remains
similar in behaviour to face.
- added SymmHash to Pair, for use when order is unimportant.
STYLE: use string::hash() more consistently
- no particular reason to use Hash<word>() which forwards to
string::hash() anyhow
- With argList::noFunctionObjects() we use the logic added in
4b93333292 (issue #352)
By removing the '-noFunctionObjects' option, we automatically
suppress the creation of function-objects via Time (with argList
as a parameter).
There is generally no need in these cases for an additional
runTime.functionObjects().off() statement
Use the argList::noFunctionObjects() for more direct configuration
and reduce unnecessary clutter in the -help information.
In previous versions, the -noFunctionObjects would have been redundant
anyhow, so we can also just ignore it now instead.
- allows use with any container with begin(), end() and where the
"*iterator" dereference returns a label, which is used for indexing
into the list of points.
This container could be labelUList, bitSet, labelHashSet, etc
- takes a direct approach of determining which cells are cut and walks
the cell faces directly to build the resulting surface.
- better handling of corner cases.
* Avoids redundant points when the cut passes exactly through a
mesh point.
* Supresses generation of duplicates faces when the plane cut
coincides exactly with a mesh face.
- for severely concave cells where the plane cuts a face multiple times
there is currently no remedial action taken, except to note the
failure and unwind the insertion of the corresponding points and
faces.
- signedDistance() method is like distance() but retains
the positive/negative sign for the side of the plane.
- the sign() method returns the sign as -1,0,+1 integer for
classification purposes where it is important to distinguish between
a zero value and a positive value (eg, for cutting). Optional
tolerance can be supplied to round for zero.
- refactor and inlined simple and frequently used methods.
- add boundBox faceCentre() method, which can be useful for creating
clipping planes from a bounding box.
Relocated treeBoundBox faceNormals to boundBox since they apply
equally there - the meaning of the faces (x-min, x-max, etc)
is the same, even if the point addressing for the faces differs.
- rationalized code dealing with extraction of name or indices from
coordinateSystems, polyBoundaryMesh, faBoundaryMesh, fvBoundaryMesh,
ZoneMesh to use internal implementations that allow direct
searching/matching without building an intermediate list of names.
- simpler and more efficient handling of patch group matching.
- centralizes IOobject handling and treatment of alternative locations.
If an alternative file location is specified, it will be used instead.
- provide decompositionMethod::canonicalName instead of using
"decomposeParDict" in various places.
- treat as a List constant without requiring inclusion of ListOps.H
- replace use of emptyList<label>() with emptyLabelList directly.
The emptyList<T>() casting is disallowed with many modern compilers
and now marked as deprecated (expect early removal).
- relocate labelList typedef to List.H for more general access.
Similar reasoning to having labelUList defined in UList.H
- makes for easier extraction of boundary values since it encapsulates
start/size directly.
Eg,
SubList<T>(allValues, patches.range());
or
bitSet(blocked, patches.range(patchi));
- allows for simpler unpacking of a full list, or list range into any
sufficiently large integral type.
For example,
processorPolyPatch pp = ...;
UOPstream toNbr(pp.neighbProcNo(), pBufs);
toNbr << faceValues.unpack<char>(pp.range());
General:
* -roots, -hostRoots, -fileHandler
Specific:
* -to <coordinateSystem> -from <coordinateSystem>
- Display -help-compat when compatibility or ignored options are available
STYLE: capitalization of options text
- avoids compiler ambiguity when virtual methods such as
IOdictionary::read() exist.
- the method was introduced in 1806, and was thus not yet widely used
- behaves the same as the valid() method, but can be queried directly
like a normal raw pointer and as per std::unique_ptr.
Eg,
autoPtr<T> ptr = ...
if (ptr) ...
- advanced options are not displayed with -help, but only with
-help-full, which helps retain a better overview of the standard
options. Replaces previous ad hoc suppression of -listSwitches,
-listRegisteredSwitches etc.
- simplifies usage.
Support syncPar check on names() to detect inconsistencies.
- simplify readFields, ReadFields and other routines by using these
new methods.
- what was previously termed 'setLargeCellSubset()' is now simply
'setCellSubset()' and supports memory efficient interfaces.
The new parameter ordering avoids ambiguities caused by default
parameters.
Old parameter order:
setLargeCellSubset
(
const labelList& region,
const label currentRegion,
const label patchID = -1,
const bool syncCouples = true
);
New parameter order:
setCellSubset
(
const label regioni,
const labelUList& regions,
const label patchID = -1,
const bool syncCouples = true
);
And without ambiguity:
setCellSubset
(
const labelUList& selectedCells,
const label patchID = -1,
const bool syncCouples = true
);
- support bitSet directly for specifying the selectedCells for
memory efficiency and ease of use.
- Additional constructors to perform setCellSubset() immediately,
which simplifies coding.
For example,
meshParts.set
(
zonei,
new fvMeshSubset(mesh, selectedCells)
);
Or even
return autoPtr<fvMeshSubset>::New(mesh, selectedCells);
- enclosed with a #ifdef Foam_argList_1712 .. #endif pair
(defined by default).
In a later release, this can be disabled by default.
ENH: add input length check for -hostRoots option
Also extended the cubic equation test routine and modified the error
methods so that they more accurately generate the round of error of
evaluation.
This resolves bug report https://bugs.openfoam.org/view.php?id=3015
- instead of dict.lookup(name) >> val;
can use dict.readEntry(name, val);
for checking of input token sizes.
This helps catch certain types of input errors:
{
key1 ; // <- Missing value
key2 1234 // <- Missing ';' terminator
key3 val;
}
STYLE: readIfPresent() instead of 'if found ...' in a few more places.
- the opposite problem from issue #762. Now we also test if the input
token stream had any tokens at all.
- called by the dictionary get<> and readEntry() methods.
- ignore implicit-fallthrough for ragel generated code.
- add -Wno-deprecated-declarations for c++LESSWARN.
These principally associated with older CGAL versions and their use
of particular mpfr routines.
Some special adjustments are undertaken for distance = 0.
- With the isoSurfaceCell algorithm is used, additional checks for open
surfaces edges are used to limit the extend of resulting distance
surface. The resulting surface elements will not, however, contain
partial cell coverage.
- Always treated as signed (ignoring the input value), since it is
nearly impossible to generate any surface otherwise.
- the original intention was to avoid vtp output when the clouds are
empty anyhow. However, it is useful for post-processing to have
clouds with zero parcels (eg, before the start of injection).
Pruning of empty clouds is now an option in the vtkCloud dictionary
controls, with the default being false (no pruning). This represents
a non-breaking change in behaviour since it generates more output
than previously.
Example,
{
type vtkCloud;
//- Suppress writing of empty clouds (default: false)
prune true;
}
This method waits until all the threads have completed IO operations and
then clears any cached information about the files on disk. This
replaces the deactivation of threading by means of zeroing the buffer
size when writing and reading of a file happen in sequence. It also
allows paraFoam to update the list of available times.
Patch contributed by Mattijs Janssens
Resolves bug report https://bugs.openfoam.org/view.php?id=2962
twoPhaseMixtureThermo writes the temperatures during construction only
for them to be read again immediately after by construction of the
individual phases' thermo models. When running with collated file
handling this behaviour is not thread safe. This change deactivates
threading for the duration of this behaviour.
Patch contributed by Mattijs Janssens
- for larger problems with a smaller region of interest, can apply a
bounding to limit the size of the ensight geometry and fields created.
Since the implementation uses a fvMeshSubset, there is an additional
per-process memory overhead.
A high output frequency should be avoided with moving meshes, since
this indirectly forces a frequent update of the submesh.
- const version of offsets().
- empty() method to test for empty offsets, or zero overall size
- reset() methods for reseting the sizes. For example, when the context
has shifted slightly.
- localStart() methods, similar to localSize() methods
STYLE: make globalIndex single parameter constructors explicit
- added line::last() for consistency with edge::last()
- adjusted unitVec() to return Zero for small vectors.
Consistent with VectorSpace normalised() and vector::normalise()
- comments
- avoid egrep for getting processor count.
- wcleanBuild, wcleanPlatform with shorter form '-curr' instead of '-c'
to avoid any potential user confusion with '-comp'
- this avoids a situation when an aborted sourcing of the etc/bashrc
file can leave WM_SHELL_FUNCTIONS defined, which causes all
subsequent sourcing to fail.
- can be used to test the behaviour of the decomposion and its
characteristics without writing any decomposition to disk.
Combine with -cellDist to visualize the expected decomposition
result.
- aids with detection of excess tokens (issue #762)
- deprecated dictionary::operator[] in favour of the lookup() method
which offers more flexibilty and clarity of purpose.
Additionally, the read<> and get<> forms should generally be used
instead anyhow.
- FOAM_CONFIG_NOUSER
Suppress use of user/group configuration files.
This is useful when packaging for a central installation.
- allow additional user tuning of compiler settings.
Per-compiler overrides in "compiler-$WM_COMPILER" files
- the vector normalise() method modifies the object inplace,
the normalised function returns a copy.
vector vec1(1,2,3);
vec1.normalise();
vs
vector vec1(1,2,3);
vec1 /= mag(vec1) + VSMALL;
For const usage, can use either of these
const vector vec2a(normalised(vector(1,2,3)));
const vector vec2b(vector(1,2,3).normalise());
DOC: document topo sources inputs in doxygen format
ENH: check for excess tokens in dictionary input (issue #762)
- various bits of code cleanup (modernization) in meshTool/sets.
- improve doxygen entries for searchable surfaces.
- support selection of searchable surfaces with shorter names.
Eg,
type box | cylinder | ...;
vs type searchableBox | searchableCylinder | ...;
- relocate some standard functionality to TimePaths to allow a lighter
means of managing time directories without using the entire Time
mechanism.
- optional enableLibs for Time construction (default is on)
and a corresponding argList::noLibs() and "-no-libs" option
STYLE:
- mark Time::outputTime() as deprecated MAY-2016
- use pre-increment for runTime, although there is no difference in
behaviour or performance.
OpenFOAM is a free, open source CFD software [released and developed primarily by OpenCFD Ltd](http://www.openfoam.com) since 2004. It has a large user base across most areas of engineering and science, from both commercial and academic organisations. OpenFOAM has an extensive range of features to solve anything from complex fluid flows involving chemical reactions, turbulence and heat transfer, to acoustics, solid mechanics and electromagnetics. [More...](http://www.openfoam.com/documentation)
OpenFOAM is professionally released every six months to include customer sponsored developments and contributions from the community - individual and group contributors, fork re-integrations including from FOAM-extend and OpenFOAM Foundation Ltd - in this Official Release sanctioned by the OpenFOAM Worldwide Trademark Owner aiming towards one OpenFOAM.
OpenFOAM is professionally released every six months to include
customer sponsored developments and contributions from the community -
individual and group contributors, re-integrations (including from
FOAM-extend and OpenFOAM Foundation Ltd) - in this Official Release
sanctioned by the OpenFOAM Worldwide Trademark Owner aiming towards
one OpenFOAM.
# Copyright
@ -17,6 +22,162 @@ Please [contact OpenCFD](http://www.openfoam.com/contact) if you have any questi
Violations of the Trademark are continuously monitored, and will be duly prosecuted.
# Using OpenFOAM
If OpenFOAM has already been compiled on your system, simply source
the appropriate `etc/bashrc` or `etc/cshrc` file and get started.
# How do I know which version I am currently using?
The value of the `$WM_PROJECT_DIR` or even `$WM_PROJECT_VERSION` are
not guaranteed to have any correspondence to the OpenFOAM release
(API) value. If OpenFOAM has already been compiled, the build-time
information is embedded into each application. For example, as
displayed from `blockMesh -help`:
```
Using: OpenFOAM-v1812.local (1812) (see www.OpenFOAM.com)
Build: 65d6551ff7-20190530 (patch=190531)
Arch: LSB;label=32;scalar=64
```
This output contains all of the more interesting information that we need:
| item | value |
|-----------------------|---------------|
| version | v1812.local |
| api | 1812 |
| commit | 65d6551ff7 |
| author date | 20190530 |
| patch-level | (20)190531 |
| label/scalar size | 32/64 bits |
As can be seen in this example, the git build information is
supplemented by the date when the last change was authored, which can
be helpful when the repository contains local changes. If you simply
wish to know the current API and patch levels directly, the
`wmakeBuildInfo` script provides the relevant information even
when OpenFOAM has not yet been compiled:
```
$ wmakeBuildInfo
make
api = 1812
patch = 190531
branch = master
build = 65d6551ff7-20190530
```
Similar information is available with `foamEtcFile`, using the
`-show-api` or `-show-patch` options. For example,
```
$ foamEtcFile -show-api
1812
$ foamEtcFile -show-patch
190531
```
This output will generally be the easiest to parse for scripts.
The `$FOAM_API` convenience environment variable may not reflect the
patching changes made within the currently active environment and
should be used with caution.
# ThirdParty directory
OpenFOAM normally ships with a directory of 3rd-party software and
build scripts for some 3rd-party software that is either necessary or
at least highly useful for OpenFOAM, but which are not necessarily
readily available on every operating system or cluster installation.
These 3rd-party sources are normally located in a directory parallel
to the OpenFOAM directory. For example,
```
/path/parent
|-- OpenFOAM-v1906
\-- ThirdParty-v1906
```
There are, however, many cases where this simple convention is inadequate:
* When no additional 3rd party software is actually required (ie, the
operating system or cluster installation provides it)
* When we have changed the OpenFOAM directory name to some arbitrary
directory name, e.g. openfoam-sandbox1906, etc..
* When we would like any additional 3rd party software to be located
inside of the OpenFOAM directory to ensure that the installation is
encapsulated within a single directory structure. This can be
necessary for cluster installations, or may simply be a convenient
means of performing a software rollout for individual workstations.
* When we have many different OpenFOAM directories for testing or
developing various different features but wish to use or reuse the
same 3rd party software for them all.
The solution for these problems is a newer, more intelligent discovery when locating the ThirdParty directory with the following precedence:
1. PROJECT/ThirdParty
* for single-directory installations
2. PREFIX/ThirdParty-VERSION
* this corresponds to the traditional approach
3. PREFIX/ThirdParty-vAPI
* allows for an updated value of VERSION, *eg*, `v1906-myCustom`,
without requiring a renamed ThirdParty. The API value would still
be `1906` and the original `ThirdParty-v1906/` would be found.
4. PREFIX/ThirdParty-API
* this is the same as the previous example, but using an unadorned
API value. This also makes sense if the chosen version name also
uses the unadorned API value in its naming, *eg*,
`1906-patch190131`, `1906.19W03`
5. PREFIX/ThirdParty-common
* permits maximum reuse for various versions, but only for
experienced user who are aware of potential version
incompatibilities
If none of these directories are found to be suitable, it reverts to using PROJECT/ThirdParty as a dummy location (even if the directory does not exist). This is a safe fallback value since it is within the OpenFOAM directory structure and can be trusted to have no negative side-effects.
In the above, the following notation has been used:
| name | value | meaning |
|---------------|---------------|---------------|
| PROJECT | `$WM_PROJECT_DIR` | The OpenFOAM directory |
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