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lammps-gran-kokkos/doc/src
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Axel Kohlmeyer cbefeeb677 Merge pull request #3220 from athomps/specify-verlet 
Explcitly state that fix nve uses velocity-Verlet integrator
2022-04-22 23:10:48 -04:00
..
_ext
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99
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2001
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img
use larger version of FFT grid comm image
2021-09-06 15:50:02 -04:00
JPG
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PDF
Fix Colvars output files not written with "run 0"
2021-09-27 13:38:30 -04:00
.gitignore
…
accel_styles.rst
update title in reference to accelerator section
2021-10-11 17:26:24 -04:00
angle_charmm.rst
avoid duplication of Accelerator package info in additional doc pages
2021-10-11 16:49:59 -06:00
angle_class2.rst
minor correction to angle class2
2021-12-20 10:33:05 -07:00
angle_coeff.rst
…
angle_cosine_buck6d.rst
bulk rename of remaining USER- packages
2021-06-29 20:12:59 -04:00
angle_cosine_delta.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
angle_cosine_periodic.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
angle_cosine_shift_exp.rst
correct package designations for styles in the EXTRA-MOLECULES package
2021-08-22 11:27:48 -04:00
angle_cosine_shift.rst
correct package designations for styles in the EXTRA-MOLECULES package
2021-08-22 11:27:48 -04:00
angle_cosine_squared.rst
…
angle_cosine.rst
…
angle_cross.rst
fix up mistyped package names
2021-07-03 16:19:15 -04:00
angle_dipole.rst
move some styles around
2021-07-09 16:54:00 -04:00
angle_fourier_simple.rst
correct package designations for styles in the EXTRA-MOLECULES package
2021-08-22 11:27:48 -04:00
angle_fourier.rst
correct package designations for styles in the EXTRA-MOLECULES package
2021-08-22 11:27:48 -04:00
angle_gaussian.rst
correct package designations for styles in the EXTRA-MOLECULES package
2021-08-22 11:27:48 -04:00
angle_harmonic.rst
…
angle_hybrid.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
angle_mm3.rst
fix up mistyped package names
2021-07-03 16:19:15 -04:00
angle_none.rst
…
angle_quartic.rst
correct package designations for styles in the EXTRA-MOLECULES package
2021-08-22 11:27:48 -04:00
angle_sdk.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
angle_style.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
angle_table.rst
…
angle_zero.rst
…
angles.rst
…
atc_add_molecule.rst
…
atc_add_species.rst
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atc_atom_element_map.rst
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atc_atom_weight.rst
…
atc_atomic_charge.rst
…
atc_boundary_dynamics.rst
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atc_boundary_faceset.rst
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atc_boundary_type.rst
…
atc_consistent_fe_initialization.rst
…
atc_control_localized_lambda.rst
…
atc_control_momentum.rst
…
atc_control_thermal.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
atc_decomposition.rst
…
atc_electron_integration.rst
…
atc_equilibrium_start.rst
…
atc_extrinsic_exchange.rst
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atc_fe_md_boundary.rst
…
atc_filter_scale.rst
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atc_filter_type.rst
…
atc_fix_flux.rst
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atc_fix.rst
…
atc_hardy_computes.rst
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atc_hardy_fields.rst
…
atc_hardy_gradients.rst
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atc_hardy_kernel.rst
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atc_hardy_on_the_fly.rst
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atc_hardy_rates.rst
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atc_initial.rst
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atc_internal_element_set.rst
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atc_internal_quadrature.rst
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atc_kernel_bandwidth.rst
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atc_lumped_lambda_solve.rst
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atc_mask_direction.rst
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atc_mass_matrix.rst
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atc_material.rst
…
atc_mesh_add_to_nodeset.rst
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atc_mesh_create_elementset.rst
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atc_mesh_create_faceset_box.rst
…
atc_mesh_create_faceset_plane.rst
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atc_mesh_create_nodeset.rst
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atc_mesh_create.rst
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atc_mesh_delete_elements.rst
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atc_mesh_nodeset_to_elementset.rst
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atc_mesh_output.rst
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atc_mesh_quadrature.rst
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atc_mesh_read.rst
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atc_mesh_write.rst
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atc_output_boundary_integral.rst
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atc_output_contour_integral.rst
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atc_output_nodeset.rst
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atc_output_volume_integral.rst
…
atc_output.rst
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atc_pair_interactions.rst
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atc_poisson_solver.rst
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atc_read_restart.rst
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atc_remove_molecule.rst
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atc_remove_source.rst
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atc_remove_species.rst
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atc_reset_atomic_reference.rst
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atc_reset_time.rst
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atc_sample_frequency.rst
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atc_set_reference_pe.rst
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atc_source_integration.rst
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atc_source.rst
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atc_temperature_definition.rst
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atc_time_filter.rst
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atc_time_integration.rst
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atc_track_displacement.rst
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atc_unfix_flux.rst
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atc_unfix.rst
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atc_write_atom_weights.rst
…
atc_write_restart.rst
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atom_modify.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
atom_style.rst
Rename sphere/bpm, remove bond instance, add smooth option
2022-03-23 11:41:27 -06:00
balance.rst
consolidate pair-wise vs pairwise spelling
2022-01-21 10:48:35 -05:00
Bibliography.rst
update documentation for new centroid stress for shake and rigid/small
2022-01-05 19:02:25 +09:00
bond_bpm_rotational.rst
Fixing remaining errors/warnings in doc build
2022-04-12 15:59:38 -06:00
bond_bpm_spring.rst
Fixing remaining errors/warnings in doc build
2022-04-12 15:59:38 -06:00
bond_class2.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
bond_coeff.rst
…
bond_fene_expand.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
bond_fene.rst
clarify docs for bond style fene/nm/split and rename to fene/nm
2021-12-06 16:21:12 -05:00
bond_gaussian.rst
correct package designations for styles in the EXTRA-MOLECULES package
2021-08-22 11:27:48 -04:00
bond_gromos.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
bond_harmonic_shift_cut.rst
correct package designations for styles in the EXTRA-MOLECULES package
2021-08-22 11:27:48 -04:00
bond_harmonic_shift.rst
correct package designations for styles in the EXTRA-MOLECULES package
2021-08-22 11:27:48 -04:00
bond_harmonic.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
bond_hybrid.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
bond_mm3.rst
fix up mistyped package names
2021-07-03 16:19:15 -04:00
bond_morse.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
bond_none.rst
…
bond_nonlinear.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
bond_oxdna.rst
Merge pull request #2924 from ohenrich/cg-dna
2021-09-07 14:12:07 -04:00
bond_quartic.rst
Expanding broken bonds documentation, adding support for more create/delete bond commands, misc small edits
2021-12-06 17:27:25 -07:00
bond_special.rst
move some styles around
2021-07-09 16:54:00 -04:00
bond_style.rst
Fixing broken links/references in documentation
2022-04-12 13:36:39 -06:00
bond_table.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
bond_write.rst
…
bond_zero.rst
…
bonds.rst
…
boundary.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
box.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
Build_basics.rst
bulk rename of remaining USER- packages
2021-06-29 20:12:59 -04:00
Build_cmake.rst
Document multi-configuration build support in CMake
2021-11-04 16:32:21 -04:00
Build_development.rst
document "slow" and "unstable" labels for unit tests
2021-12-09 17:02:20 -05:00
Build_diskspace.rst
update documentation to refer to the new branch names (develop, release)
2021-10-10 04:39:16 -04:00
Build_extras.rst
clarify CUDA versus OpenCL build and runtime restrictions
2022-04-13 14:24:43 -04:00
Build_link.rst
…
Build_make.rst
bulk rename of remaining USER- packages
2021-06-29 20:12:59 -04:00
Build_manual.rst
add fasthtml target for faster testing of .rst to html translation
2022-04-20 15:02:00 -04:00
Build_package.rst
remove src/MESSAGE package and supporting dirs and doc pages
2022-04-07 15:44:48 -06:00
Build_settings.rst
correct mini-ToC links and add missing entry
2022-03-06 11:45:26 -05:00
Build_windows.rst
remove references to the mailing list in the manual and replace with forum link, if needed
2022-03-29 07:01:00 -04:00
Build.rst
notes on reducing disk space requirements when building LAMMPS from source
2021-08-25 22:51:21 -04:00
change_box.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
Classes_atom.rst
…
Classes_input.rst
…
Classes_lammps.rst
…
Classes.rst
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clear.rst
…
comm_modify.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
comm_style.rst
…
Commands_all.rst
fix remaining doc build issues
2022-04-09 00:39:27 -04:00
Commands_bond.rst
Merge branch 'develop' into BPM
2022-01-12 10:52:11 -07:00
Commands_category.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
Commands_compute.rst
Merge branch 'develop' into BPM
2022-04-11 12:18:34 -04:00
Commands_fix.rst
Fixing remaining errors/warnings in doc build
2022-04-12 15:59:38 -06:00
Commands_input.rst
add -skiprun command line flag that sets a timeout so that run and minimizations loops are skipped
2021-09-03 11:21:42 -04:00
Commands_kspace.rst
make ewald/disp/dipole an alias for ewald/disp for more obvious choices for users
2021-08-21 15:56:46 -04:00
commands_list.rst
fix remaining doc build issues
2022-04-09 00:39:27 -04:00
Commands_pair.rst
Merge branch 'develop' into dielectric-updates
2022-04-17 17:47:55 -04:00
Commands_parse.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
Commands_removed.rst
rename USER-REAXC to REAXFF
2021-06-29 19:37:55 -04:00
Commands_structure.rst
…
Commands.rst
…
compute_ackland_atom.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
compute_adf.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
compute_angle_local.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
compute_angle.rst
cosmetic changes for consistency
2021-09-07 19:12:59 -04:00
compute_angmom_chunk.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
compute_ave_sphere_atom.rst
Rename and relocate
2021-12-21 16:29:11 -07:00
compute_basal_atom.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
compute_body_local.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
compute_bond_local.rst
whitespace fixes
2021-11-22 14:58:41 -05:00
compute_bond.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
compute_centro_atom.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
compute_chunk_atom.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
compute_chunk_spread_atom.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
compute_cluster_atom.rst
move some more computes from EXTRA-COMPUTE back to src because of dependencies
2021-07-27 12:07:27 -04:00
compute_cna_atom.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
compute_cnp_atom.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
compute_com_chunk.rst
…
compute_com.rst
…
compute_contact_atom.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
compute_coord_atom.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
compute_damage_atom.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
compute_dihedral_local.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
compute_dihedral.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
compute_dilatation_atom.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
compute_dipole_chunk.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
compute_dipole.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
compute_displace_atom.rst
…
compute_dpd_atom.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
compute_dpd.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
compute_edpd_temp_atom.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
compute_efield_atom.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
compute_entropy_atom.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
compute_erotate_asphere.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
compute_erotate_rigid.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
compute_erotate_sphere_atom.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
compute_erotate_sphere.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
compute_event_displace.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
compute_fabric.rst
Updating documentation, adding compute scalar
2021-06-22 14:14:25 -06:00
compute_fep_ta.rst
update doc and example
2022-03-31 12:25:10 +08:00
compute_fep.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
compute_global_atom.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
compute_group_group.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
compute_gyration_chunk.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
compute_gyration_shape_chunk.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
compute_gyration_shape.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
compute_gyration.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
compute_heat_flux.rst
update documentation for new centroid stress for shake and rigid/small
2022-01-05 19:02:25 +09:00
compute_hexorder_atom.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
compute_hma.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
compute_improper_local.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
compute_improper.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
compute_inertia_chunk.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
compute_ke_atom_eff.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
compute_ke_atom.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
compute_ke_eff.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
compute_ke_rigid.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
compute_ke.rst
…
compute_mesont.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
compute_mliap.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
compute_modify.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
compute_momentum.rst
clarify. improve typesetting
2022-03-05 10:18:00 -05:00
compute_msd_chunk.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
compute_msd_nongauss.rst
make compute msd (and msd/nongauss) error out immediately when used with a dynamic group
2022-04-02 17:13:30 -04:00
compute_msd.rst
make compute msd (and msd/nongauss) error out immediately when used with a dynamic group
2022-04-02 17:13:30 -04:00
compute_nbond_atom.rst
Fixing remaining errors/warnings in doc build
2022-04-12 15:59:38 -06:00
compute_omega_chunk.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
compute_orientorder_atom.rst
move compute orientorder/atom because compute coord/atom depends on it
2021-07-27 11:16:40 -04:00
compute_pair_local.rst
whitespace fixes
2021-11-22 14:58:41 -05:00
compute_pair.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
compute_pe_atom.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
compute_pe.rst
…
compute_plasticity_atom.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
compute_pressure_uef.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
compute_pressure.rst
Finished debugging, testing, documenting
2022-01-28 18:34:30 -07:00
compute_property_atom.rst
whitespace fixes
2021-08-18 13:06:00 -04:00
compute_property_chunk.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
compute_property_local.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
compute_ptm_atom.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
compute_rdf.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
compute_reduce_chunk.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
compute_reduce.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
compute_rigid_local.rst
clarify and remove redundant text
2022-04-22 09:32:10 -04:00
compute_saed.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
compute_slice.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
compute_smd_contact_radius.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
compute_smd_damage.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
compute_smd_hourglass_error.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
compute_smd_internal_energy.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
compute_smd_plastic_strain_rate.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
compute_smd_plastic_strain.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
compute_smd_rho.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
compute_smd_tlsph_defgrad.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
compute_smd_tlsph_dt.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
compute_smd_tlsph_num_neighs.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
compute_smd_tlsph_shape.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
compute_smd_tlsph_strain_rate.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
compute_smd_tlsph_strain.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
compute_smd_tlsph_stress.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
compute_smd_triangle_vertices.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
compute_smd_ulsph_effm.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
compute_smd_ulsph_num_neighs.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
compute_smd_ulsph_strain_rate.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
compute_smd_ulsph_strain.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
compute_smd_ulsph_stress.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
compute_smd_vol.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
compute_sna_atom.rst
Completed documentation
2022-03-11 20:40:18 -07:00
compute_sph_e_atom.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
compute_sph_rho_atom.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
compute_sph_t_atom.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
compute_spin.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
compute_stress_atom.rst
update documentation for new centroid stress for shake and rigid/small
2022-01-05 19:02:25 +09:00
compute_stress_mop.rst
rename doc file to be more generic and match the examples folder
2022-03-07 15:34:00 -05:00
compute_stress_profile.rst
rename doc file to be more generic and match the examples folder
2022-03-07 15:34:00 -05:00
compute_tally.rst
fix typos and make output section more readable
2022-03-04 06:25:16 -05:00
compute_tdpd_cc_atom.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
compute_temp_asphere.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
compute_temp_body.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
compute_temp_chunk.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
compute_temp_com.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
compute_temp_cs.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
compute_temp_deform_eff.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
compute_temp_deform.rst
Updated documentation to include Kokkos accelerated NEMD styles.
2021-08-18 15:23:46 +10:00
compute_temp_drude.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
compute_temp_eff.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
compute_temp_partial.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
compute_temp_profile.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
compute_temp_ramp.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
compute_temp_region_eff.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
compute_temp_region.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
compute_temp_rotate.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
compute_temp_sphere.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
compute_temp_uef.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
compute_temp.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
compute_ti.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
compute_torque_chunk.rst
…
compute_vacf.rst
…
compute_vcm_chunk.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
compute_viscosity_cos.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
compute_voronoi_atom.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
compute_xrd.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
compute.rst
Merge branch 'develop' into BPM
2022-04-11 12:18:34 -04:00
computes.rst
…
Cplusplus.rst
…
create_atoms.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
create_bonds.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
create_box.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
delete_atoms.rst
bug fixes from Doug Spearot
2021-11-30 08:22:38 -07:00
delete_bonds.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
Developer_code_design.rst
correct file name
2022-02-18 21:24:02 -05:00
Developer_comm_ops.rst
update docs
2022-02-25 14:13:03 -05:00
Developer_flow.rst
…
Developer_notes.rst
implement suggestions from @athomps
2022-03-18 18:28:20 -04:00
Developer_org.rst
remove obsolete TODO item
2022-03-03 06:43:52 -05:00
Developer_par_comm.rst
break large file into multiple smaller files by section and add toctree
2021-09-05 21:57:03 -04:00
Developer_par_long.rst
use larger version of FFT grid comm image
2021-09-06 15:50:02 -04:00
Developer_par_neigh.rst
fix typo
2021-09-05 22:10:00 -04:00
Developer_par_openmp.rst
add discussion of OpenMP parallelization
2021-09-06 09:52:19 -04:00
Developer_par_part.rst
break large file into multiple smaller files by section and add toctree
2021-09-05 21:57:03 -04:00
Developer_parallel.rst
update some formulations as suggested by @sjplimp
2021-09-23 13:51:06 -04:00
Developer_platform.rst
implement and use a platform neutral abstraction of unsetenv(3)
2021-11-03 10:53:45 -04:00
Developer_plugins.rst
spelling
2022-04-07 14:50:33 -04:00
Developer_unittest.rst
bulk rename of remaining USER- packages
2021-06-29 20:12:59 -04:00
Developer_utils.rst
add utility to print url with pointer to error message
2022-04-22 05:25:50 -04:00
Developer_write.rst
correct code example
2022-01-01 16:40:54 -05:00
Developer.rst
Merge pull request #3146 from lammps/programmer-comm-doc
2022-02-22 20:13:32 -05:00
dielectric.rst
…
dihedral_charmm.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
dihedral_class2.rst
…
dihedral_coeff.rst
…
dihedral_cosine_shift_exp.rst
move some styles around
2021-07-09 16:54:00 -04:00
dihedral_fourier.rst
correct package designations for styles in the EXTRA-MOLECULES package
2021-08-22 11:27:48 -04:00
dihedral_harmonic.rst
…
dihedral_helix.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
dihedral_hybrid.rst
update docs for hybrid style updates
2021-08-02 21:53:31 -04:00
dihedral_multi_harmonic.rst
…
dihedral_nharmonic.rst
correct package designations for styles in the EXTRA-MOLECULES package
2021-08-22 11:27:48 -04:00
dihedral_none.rst
…
dihedral_opls.rst
…
dihedral_quadratic.rst
correct package designations for styles in the EXTRA-MOLECULES package
2021-08-22 11:27:48 -04:00
dihedral_spherical.rst
correct package designations for styles in the EXTRA-MOLECULES package
2021-08-22 11:27:48 -04:00
dihedral_style.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
dihedral_table.rst
correct package designations for styles in the EXTRA-MOLECULES package
2021-08-22 11:27:48 -04:00
dihedral_zero.rst
…
dihedrals.rst
…
dimension.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
displace_atoms.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
dump_adios.rst
update and improve ADIOS support
2022-03-29 01:01:57 -04:00
dump_cfg_uef.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
dump_h5md.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
dump_image.rst
reorder
2021-11-02 14:35:36 -04:00
dump_modify.rst
Fixing remaining errors/warnings in doc build
2022-04-12 15:59:38 -06:00
dump_molfile.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
dump_netcdf.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
dump_vtk.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
dump.rst
implement a dump style yaml
2022-04-06 19:11:55 -04:00
dynamical_matrix.rst
update docs
2021-12-14 09:13:05 -05:00
echo.rst
…
Errors_bugs.rst
remove references to the mailing list in the manual and replace with forum link, if needed
2022-03-29 07:01:00 -04:00
Errors_common.rst
…
Errors_debug.rst
fix typo
2021-09-20 07:29:10 -04:00
Errors_details.rst
add utility to print url with pointer to error message
2022-04-22 05:25:50 -04:00
Errors_messages.rst
Finished debugging, testing, documenting
2022-01-28 18:34:30 -07:00
Errors_warnings.rst
consolidate pair-wise vs pairwise spelling
2022-01-21 10:48:35 -05:00
Errors.rst
add utility to print url with pointer to error message
2022-04-22 05:25:50 -04:00
Examples.rst
Merge branch 'develop' into BPM
2022-04-11 12:18:34 -04:00
fix_accelerate_cos.rst
update references to USER-MISC package
2021-07-25 10:42:35 -04:00
fix_acks2_reaxff.rst
Update fix ACKS2 docs
2022-04-01 12:45:38 -06:00
fix_adapt_fep.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_adapt.rst
add support for angle cosine
2022-04-22 09:12:12 -06:00
fix_addforce.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_addtorque.rst
Updating MISC to EXTRA-X in doc files
2021-12-13 12:27:00 -07:00
fix_append_atoms.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_atc.rst
correct formatting of references
2022-02-20 04:26:18 -05:00
fix_atom_swap.rst
fix spelling and make consistent
2021-10-13 19:25:09 -04:00
fix_ave_atom.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_ave_chunk.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_ave_correlate_long.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_ave_correlate.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_ave_histo.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_ave_time.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_aveforce.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_balance.rst
Merge branch 'master' into collected-small-changes
2021-07-27 11:15:00 -04:00
fix_bocs.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_bond_break.rst
Expanding broken bonds documentation, adding support for more create/delete bond commands, misc small edits
2021-12-06 17:27:25 -07:00
fix_bond_create.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_bond_react.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_bond_swap.rst
Correct fix bond/swap doc page
2021-09-02 14:10:43 -04:00
fix_box_relax.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_brownian.rst
fix doc building issues
2022-03-29 09:47:44 -04:00
fix_charge_regulation.rst
whitespace
2022-01-28 14:48:34 -05:00
fix_cmap.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_colvars.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_controller.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_damping_cundall.rst
add Note to damping/cundall documentation about fix order. Remove fix order warning from fix viscous/sphere
2022-03-23 14:59:43 -05:00
fix_deform.rst
doc page edit
2022-04-04 08:59:40 -06:00
fix_deposit.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_dpd_energy.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_dpd_source.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_drag.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_drude_transform.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_drude.rst
update docs for renames examples folders
2021-06-29 11:31:57 -04:00
fix_dt_reset.rst
bug fixes to make a series of test inputs run correctly
2021-12-08 16:44:51 -07:00
fix_efield.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_ehex.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_electron_stopping.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_enforce2d.rst
…
fix_eos_cv.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_eos_table_rx.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_eos_table.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_evaporate.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_external.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_ffl.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_filter_corotate.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_flow_gauss.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_freeze.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_gcmc.rst
fix small typesetting issues
2022-03-12 09:53:50 -05:00
fix_gld.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_gle.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_gravity.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_grem.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_halt.rst
use MBytes consistently
2021-08-26 01:00:08 -04:00
fix_heat.rst
…
fix_hyper_global.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_hyper_local.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_imd.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_indent.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_ipi.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_langevin_drude.rst
Consolidate "Jiang" citations
2021-12-06 14:07:36 -05:00
fix_langevin_eff.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_langevin_spin.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_langevin.rst
clarify doc pages for thermostatting fixes to mention regions
2021-09-30 16:55:22 -06:00
fix_latte.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_lb_fluid.rst
remove defunct LBtype argument from lb/fluid doc
2022-03-27 11:26:23 -04:00
fix_lb_momentum.rst
upgrade of lb/fluid fix
2021-12-01 14:31:57 -05:00
fix_lb_viscous.rst
update citation references
2022-03-04 18:16:02 -05:00
fix_lineforce.rst
…
fix_manifoldforce.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_mdi_aimd.rst
fix spelling, formatting, and cross-link/indexing issues
2022-04-08 18:35:51 -04:00
fix_meso_move.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_modify_atc_commands.rst
…
fix_modify.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_mol_swap.rst
fix spelling and make consistent
2021-10-13 19:25:09 -04:00
fix_momentum.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_move.rst
add "transrot" style to fix move that allows to do translation and rotation at the same time
2022-04-02 18:34:17 -04:00
fix_mscg.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_msst.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_mvv_dpd.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_neb_spin.rst
…
fix_neb.rst
Merge branch 'master' into collected-small-changes
2021-07-27 11:15:00 -04:00
fix_nh_eff.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_nh_uef.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_nh.rst
clarify doc pages for thermostatting fixes to mention regions
2021-09-30 16:55:22 -06:00
fix_nph_asphere.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_nph_body.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_nph_sphere.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_nphug.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_npt_asphere.rst
clarify doc pages for thermostatting fixes to mention regions
2021-09-30 16:55:22 -06:00
fix_npt_body.rst
clarify doc pages for thermostatting fixes to mention regions
2021-09-30 16:55:22 -06:00
fix_npt_cauchy.rst
clarify doc pages for thermostatting fixes to mention regions
2021-09-30 16:55:22 -06:00
fix_npt_sphere.rst
clarify doc pages for thermostatting fixes to mention regions
2021-09-30 16:55:22 -06:00
fix_numdiff_virial.rst
Finished debugging, testing, documenting
2022-01-28 18:34:30 -07:00
fix_numdiff.rst
Finished debugging, testing, documenting
2022-01-28 18:34:30 -07:00
fix_nve_asphere_noforce.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_nve_asphere.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_nve_awpmd.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_nve_body.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_nve_bpm_sphere.rst
Fixing remaining errors/warnings in doc build
2022-04-12 15:59:38 -06:00
fix_nve_dot.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_nve_dotc_langevin.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_nve_eff.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_nve_limit.rst
…
fix_nve_line.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_nve_manifold_rattle.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_nve_noforce.rst
move back to src for dependencies
2021-07-27 15:53:35 -04:00
fix_nve_sphere.rst
…
fix_nve_spin.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_nve_tri.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_nve.rst
fix typo
2022-04-22 22:08:13 -04:00
fix_nvk.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_nvt_asphere.rst
clarify doc pages for thermostatting fixes to mention regions
2021-09-30 16:55:22 -06:00
fix_nvt_body.rst
clarify doc pages for thermostatting fixes to mention regions
2021-09-30 16:55:22 -06:00
fix_nvt_manifold_rattle.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_nvt_sllod_eff.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_nvt_sllod.rst
Finished debugging, testing, documenting
2022-01-28 18:34:30 -07:00
fix_nvt_sphere.rst
clarify doc pages for thermostatting fixes to mention regions
2021-09-30 16:55:22 -06:00
fix_oneway.rst
Updating MISC to EXTRA-X in doc files
2021-12-13 12:27:00 -07:00
fix_orient_eco.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_orient.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_pafi.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_phonon.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_pimd.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_planeforce.rst
…
fix_plumed.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_poems.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_polarize.rst
Improved the precision of the conversion factor epsilon0e2q, added more options for units, ensured that qqrd2e be included in efield in several pair styles, and updated the fix polarize doc page
2022-04-17 12:01:41 -05:00
fix_pour.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_precession_spin.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_press_berendsen.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_print.rst
…
fix_propel_self.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_property_atom.rst
print warning when fix property/atom is issues before reading a restart
2022-04-14 11:06:35 -04:00
fix_python_invoke.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_python_move.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_qbmsst.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_qeq_comb.rst
update the note based on the suggestion by @athomps
2022-02-18 11:38:05 -05:00
fix_qeq_reaxff.rst
Merge pull request #3147 from stanmoore1/amd_hip_opt
2022-02-22 16:06:28 -05:00
fix_qeq.rst
update the note based on the suggestion by @athomps
2022-02-18 11:38:05 -05:00
fix_qmmm.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_qtb.rst
use MBytes consistently
2021-08-26 01:00:08 -04:00
fix_reaxff_bonds.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_reaxff_species.rst
add warning to fix reaxff/species to explain the impact of large averaging
2021-10-07 20:46:01 -04:00
fix_recenter.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_restrain.rst
…
fix_rhok.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_rigid_meso.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_rigid.rst
resolved merge conflicts with master
2021-08-17 11:55:33 -06:00
fix_rx.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_saed_vtk.rst
fix saed/vtk does not use the overwrite option anywhere
2021-10-04 17:22:58 -04:00
fix_setforce.rst
avoid duplication of Accelerator package info in additional doc pages
2021-10-11 16:49:59 -06:00
fix_shake.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_shardlow.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_smd_adjust_dt.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_smd_integrate_tlsph.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_smd_integrate_ulsph.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_smd_move_triangulated_surface.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_smd_setvel.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_smd_wall_surface.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_smd.rst
Updating MISC to EXTRA-X in doc files
2021-12-13 12:27:00 -07:00
fix_sph_stationary.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_sph.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_spring_chunk.rst
…
fix_spring_rg.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_spring_self.rst
…
fix_spring.rst
…
fix_srd.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_store_force.rst
…
fix_store_state.rst
resolved merge conflicts with master
2021-08-17 11:55:33 -06:00
fix_temp_berendsen.rst
clarify doc pages for thermostatting fixes to mention regions
2021-09-30 16:55:22 -06:00
fix_temp_csvr.rst
clarify doc pages for thermostatting fixes to mention regions
2021-09-30 16:55:22 -06:00
fix_temp_rescale_eff.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_temp_rescale.rst
clarify doc pages for thermostatting fixes to mention regions
2021-09-30 16:55:22 -06:00
fix_tfmc.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_tgnh_drude.rst
clarify doc pages for thermostatting fixes to mention regions
2021-09-30 16:55:22 -06:00
fix_thermal_conductivity.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_ti_spring.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_tmd.rst
modernize parsing in fix tmd, add support for comments and empty lines
2022-03-31 07:36:50 -04:00
fix_ttm.rst
fix typo
2022-04-22 11:27:08 -04:00
fix_tune_kspace.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_vector.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_viscosity.rst
correct statement (PPPM **does** support triclinic for a while already)
2022-01-29 08:18:08 -05:00
fix_viscous_sphere.rst
add support for determining damping scale factor from atom-style variable
2022-03-23 10:43:26 -04:00
fix_viscous.rst
update related commands
2022-03-23 04:57:49 -04:00
fix_wall_body_polygon.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_wall_body_polyhedron.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_wall_ees.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_wall_gran_region.rst
cosmetic changes for consistency
2021-09-07 19:12:59 -04:00
fix_wall_gran.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_wall_piston.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_wall_reflect_stochastic.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_wall_reflect.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_wall_region.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_wall_srd.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_wall.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix_widom.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
fix.rst
Fixing remaining errors/warnings in doc build
2022-04-12 15:59:38 -06:00
fixes.rst
…
Fortran.rst
…
group2ndx.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
group.rst
remove references to the mailing list in the manual and replace with forum link, if needed
2022-03-29 07:01:00 -04:00
Howto_2d.rst
…
Howto_barostat.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
Howto_bioFF.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
Howto_body.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
Howto_bpm.rst
spelling
2022-04-12 18:36:16 -04:00
Howto_broken_bonds.rst
permissions
2022-04-12 18:43:47 -04:00
Howto_chunk.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
Howto_cmake.rst
get rid of references to USER-MISC in the general discussion
2021-07-25 10:03:16 -04:00
Howto_coreshell.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
Howto_couple.rst
remove broken links in the manual from removing packages
2022-04-08 17:27:01 -04:00
Howto_diffusion.rst
…
Howto_dispersion.rst
…
Howto_drude2.rst
Consolidate "Jiang" citations
2021-12-06 14:07:36 -05:00
Howto_drude.rst
…
Howto_elastic.rst
…
Howto_github.rst
clarifications and corrections for the discussion of the main git branches
2021-11-17 06:58:44 -05:00
Howto_granular.rst
whitespace
2021-06-10 23:16:44 -04:00
Howto_kappa.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
Howto_library.rst
…
Howto_manifold.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
Howto_mdi.rst
fix spelling, formatting, and cross-link/indexing issues
2022-04-08 18:35:51 -04:00
Howto_multiple.rst
…
Howto_nemd.rst
…
Howto_output.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
Howto_polarizable.rst
bulk rename of remaining USER- packages
2021-06-29 20:12:59 -04:00
Howto_pylammps.rst
Change email in docs
2022-02-11 12:51:47 -05:00
Howto_replica.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
Howto_restart.rst
…
Howto_spc.rst
…
Howto_spherical.rst
…
Howto_spins.rst
…
Howto_structured_data.rst
correct yaml import
2022-04-07 00:37:18 -04:00
Howto_temperature.rst
…
Howto_thermostat.rst
integrate platform sub-namespace into source code and documentation
2021-10-02 16:55:11 -04:00
Howto_tip3p.rst
…
Howto_tip4p.rst
…
Howto_triclinic.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
Howto_viscosity.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
Howto_viz.rst
Merge branch 'master' into collected-small-changes
2021-07-27 11:15:00 -04:00
Howto_walls.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
Howto_wsl.rst
rename "minimal" preset to "basic"
2021-06-30 20:39:17 -04:00
Howto.rst
Fixing remaining errors/warnings in doc build
2022-04-12 15:59:38 -06:00
hyper.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
if.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
improper_class2.rst
…
improper_coeff.rst
…
improper_cossq.rst
move some styles around
2021-07-09 16:54:00 -04:00
improper_cvff.rst
…
improper_distance.rst
move some styles around
2021-07-09 16:54:00 -04:00
improper_distharm.rst
bulk rename of remaining USER- packages
2021-06-29 20:12:59 -04:00
improper_fourier.rst
move some styles around
2021-07-09 16:54:00 -04:00
improper_harmonic.rst
avoid duplication of Accelerator package info in additional doc pages
2021-10-11 16:49:59 -06:00
improper_hybrid.rst
update docs for hybrid style updates
2021-08-02 21:53:31 -04:00
improper_inversion_harmonic.rst
bulk rename of remaining USER- packages
2021-06-29 20:12:59 -04:00
improper_none.rst
…
improper_ring.rst
move some styles around
2021-07-09 16:54:00 -04:00
improper_sqdistharm.rst
move some styles around
2021-07-09 16:54:00 -04:00
improper_style.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
improper_umbrella.rst
…
improper_zero.rst
…
impropers.rst
…
include.rst
…
info.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
Install_conda.rst
…
Install_git.rst
update github managers.
2022-03-18 11:37:49 -04:00
Install_linux.rst
…
Install_mac.rst
remove src/MESSAGE package and supporting dirs and doc pages
2022-04-07 15:44:48 -06:00
Install_tarball.rst
update URL for downloading old LAMMPS versions
2022-03-24 17:02:07 -04:00
Install_windows.rst
cosmetic changes for consistency
2021-09-07 19:12:59 -04:00
Install.rst
update installation instructions and remove references to patches which we don't provide anymore
2021-06-30 14:54:58 -04:00
Intro_authors.rst
Change email in docs
2022-02-11 12:51:47 -05:00
Intro_citing.rst
add DOI for 29 September 2021 version
2022-03-26 10:48:45 -04:00
Intro_features.rst
whitespace
2021-08-26 01:05:25 -04:00
Intro_nonfeatures.rst
Merge branch 'master' into collected-small-changes
2021-07-27 11:15:00 -04:00
Intro_opensource.rst
update documentation to refer to the new branch names (develop, release)
2021-10-10 04:39:16 -04:00
Intro_overview.rst
update overview text
2021-08-24 23:02:49 -04:00
Intro_website.rst
remove references to the mailing list in the manual and replace with forum link, if needed
2022-03-29 07:01:00 -04:00
Intro.rst
…
jump.rst
…
kim_commands.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
kspace_modify.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
kspace_style.rst
change references to git:// protocol for accessing github to https://
2021-11-02 14:33:21 -04:00
label.rst
…
lattice.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
Library_add.rst
…
Library_atoms.rst
…
Library_config.rst
…
Library_create.rst
make C library example work with strict C compilers
2021-09-29 10:37:15 -04:00
Library_execute.rst
…
Library_neighbor.rst
…
Library_objects.rst
…
Library_properties.rst
…
Library_scatter.rst
add python interface with optional numpy support for lammps_gather_bonds()
2021-07-26 22:40:21 -04:00
Library_utility.rst
Add lammps_flush_buffers() library function
2022-02-04 10:40:05 -05:00
Library.rst
bulk rename of remaining USER- packages
2021-06-29 20:12:59 -04:00
log.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
Manual_version.rst
clarifications and corrections for the discussion of the main git branches
2021-11-17 06:58:44 -05:00
Manual.rst
remove references to the mailing list in the manual and replace with forum link, if needed
2022-03-29 07:01:00 -04:00
mass.rst
…
mdi.rst
fix spelling, formatting, and cross-link/indexing issues
2022-04-08 18:35:51 -04:00
min_modify.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
min_spin.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
min_style.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
minimize.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
Modify_atom.rst
update docs for adding atom styles to refactored process
2022-04-14 11:48:18 -04:00
Modify_body.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
Modify_bond.rst
…
Modify_command.rst
…
Modify_compute.rst
bulk rename of remaining USER- packages
2021-06-29 20:12:59 -04:00
Modify_contribute.rst
remove references to the mailing list in the manual and replace with forum link, if needed
2022-03-29 07:01:00 -04:00
Modify_dump.rst
…
Modify_fix.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
Modify_kspace.rst
…
Modify_min.rst
…
Modify_overview.rst
link Modify overview paragraph to Code design page
2022-02-27 11:29:19 -05:00
Modify_pair.rst
explain that the computed force in python pair is force/r same as in Pair:single()
2022-01-03 10:12:51 -05:00
Modify_region.rst
…
Modify_style.rst
add link to code design page and update/clarify a couple of things
2022-02-27 11:29:20 -05:00
Modify_thermo.rst
update documentation for modifying LAMMPS to reflect changes to Thermo class
2022-03-19 18:06:56 -04:00
Modify_variable.rst
update documentation for modifying LAMMPS to reflect changes to Thermo class
2022-03-19 18:06:56 -04:00
Modify.rst
small rewording
2022-02-28 12:17:20 -05:00
molecule.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
neb_spin.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
neb.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
neigh_modify.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
neighbor.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
newton.rst
…
next.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
package.rst
fix remaining doc build issues
2022-04-09 00:39:27 -04:00
Packages_details.rst
Merge branch 'develop' into dielectric-updates
2022-04-17 17:47:55 -04:00
Packages_list.rst
Merge branch 'develop' into BPM
2022-04-11 12:18:34 -04:00
Packages.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_adp.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_agni.rst
avoid duplication of Accelerator package info in additional doc pages
2021-10-11 16:49:59 -06:00
pair_airebo.rst
add a comment explaining the restriction to C and H elements in AIREBO/REBO
2021-08-27 10:02:53 -04:00
pair_atm.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_awpmd.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_beck.rst
forgot to move pair style beck to EXTRA-PAIR
2021-07-28 18:33:33 -04:00
pair_body_nparticle.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_body_rounded_polygon.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_body_rounded_polyhedron.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_bop.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_born.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_bpm_spring.rst
permissions
2022-04-12 18:43:47 -04:00
pair_brownian.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_buck6d_coul_gauss.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_buck_long.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_buck.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_charmm.rst
consolidate pair-wise vs pairwise spelling
2022-01-21 10:48:35 -05:00
pair_class2.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_coeff.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_colloid.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_comb.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_cosine_squared.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_coul_diel.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_coul_shield.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_coul_slater.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_coul_tt.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_coul.rst
add documentation for pair style coul/exclude
2021-08-19 05:25:36 -04:00
pair_cs.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_dielectric.rst
documentation and LAMMPS homepage URL updates
2022-04-14 15:55:22 -04:00
pair_dipole.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_dpd_ext.rst
integrated added styles into manual
2022-04-05 22:01:21 -04:00
pair_dpd_fdt.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_dpd.rst
integrated added styles into manual
2022-04-05 22:01:21 -04:00
pair_drip.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_dsmc.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_e3b.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_eam.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_edip.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_eff.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_eim.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_exp6_rx.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_extep.rst
…
pair_fep_soft.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_gauss.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_gayberne.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_gran.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_granular.rst
correct unit description of eta_n0 parameters. fixes #3016
2021-11-04 15:24:41 -04:00
pair_gromacs.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_gw.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_harmonic_cut.rst
fix errors in pair style harmonic/cut docs
2022-02-22 04:27:12 -05:00
pair_hbond_dreiding.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_hdnnp.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_hybrid.rst
improve pair hybrid documentation with respect to mixing
2021-11-19 14:18:55 -05:00
pair_ilp_graphene_hbn.rst
Update doc of pair ilp/graphene/hbn
2022-02-12 06:09:29 +02:00
pair_ilp_tmd.rst
address spelling and achor issues, and integrate into style overview tables
2022-02-16 08:10:29 -05:00
pair_kim.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_kolmogorov_crespi_full.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_kolmogorov_crespi_z.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_lcbop.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_lebedeva_z.rst
whitespace
2021-11-04 16:48:29 -04:00
pair_line_lj.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_list.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_lj96.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_lj_cubic.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_lj_cut_coul.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_lj_cut_tip4p.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_lj_expand.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_lj_long.rst
update a citation
2022-04-12 12:59:25 -06:00
pair_lj_relres.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_lj_smooth_linear.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_lj_smooth.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_lj_switch3_coulgauss_long.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_lj.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_local_density.rst
correct docs for pair style local/density
2021-12-08 00:22:37 -05:00
pair_lubricate.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_lubricateU.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_mdf.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_meam_spline.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_meam_sw_spline.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_meam.rst
update formatting
2022-03-26 10:55:10 -04:00
pair_mesocnt.rst
updated documentation
2022-03-04 10:37:45 +00:00
pair_mesodpd.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_mesont_tpm.rst
bulk rename of remaining USER- packages
2021-06-29 20:12:59 -04:00
pair_mgpt.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_mie.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_mliap.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_modify.rst
discuss mixing informational message
2021-11-19 14:36:00 -05:00
pair_momb.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_morse.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_multi_lucy_rx.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_multi_lucy.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_nb3b_harmonic.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_nm.rst
make consistent with other reference
2022-01-03 18:26:56 -05:00
pair_none.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_oxdna2.rst
Merge pull request #2924 from ohenrich/cg-dna
2021-09-07 14:12:07 -04:00
pair_oxdna.rst
Merge pull request #2924 from ohenrich/cg-dna
2021-09-07 14:12:07 -04:00
pair_oxrna2.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_pace.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_peri.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_polymorphic.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_python.rst
add harmonic/cut to python example folder. small tweaks to docs and examples
2022-03-18 17:58:30 -04:00
pair_quip.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_rann.rst
pair style rann does not support per-atom stress or pair_modify nofdotr
2021-07-11 20:03:52 -04:00
pair_reaxff.rst
Update docs
2022-03-04 13:10:25 -07:00
pair_resquared.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_saip_metal.rst
address spelling and achor issues, and integrate into style overview tables
2022-02-16 08:10:29 -05:00
pair_sdk.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_sdpd_taitwater_isothermal.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_smd_hertz.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_smd_tlsph.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_smd_triangulated_surface.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_smd_ulsph.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_smtbq.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_snap.rst
Completed documentation
2022-03-11 20:40:18 -07:00
pair_soft.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_sph_heatconduction.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_sph_idealgas.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_sph_lj.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_sph_rhosum.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_sph_taitwater_morris.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_sph_taitwater.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_spin_dipole.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_spin_dmi.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_spin_exchange.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_spin_magelec.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_spin_neel.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_srp.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_style.rst
Fixing broken links/references in documentation
2022-04-12 13:36:39 -06:00
pair_sw.rst
address spelling and achor issues, and integrate into style overview tables
2022-02-16 08:10:29 -05:00
pair_table_rx.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_table.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_tersoff_mod.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_tersoff_zbl.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_tersoff.rst
make documentation of a few pair styles more consistent with the rest
2021-11-29 15:57:11 -05:00
pair_thole.rst
make documentation of a few pair styles more consistent with the rest
2021-11-29 15:57:11 -05:00
pair_tracker.rst
Fixing remaining errors/warnings in doc build
2022-04-12 15:59:38 -06:00
pair_tri_lj.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_ufm.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_vashishta.rst
make documentation of a few pair styles more consistent with the rest
2021-11-29 15:57:11 -05:00
pair_wf_cut.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_write.rst
update comment about pair_write restrictions
2022-01-21 10:47:49 -05:00
pair_yukawa_colloid.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_yukawa.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_zbl.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pair_zero.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
pairs.rst
…
partition.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
plugin.rst
add kimplugin source and CMake based build support
2022-04-07 12:51:06 -04:00
prd.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
print.rst
…
processors.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
Python_atoms.rst
…
Python_call.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
Python_config.rst
…
Python_create.rst
add lammps_kokos_finalize() support to various LAMMPS wrappers and document
2021-06-27 17:07:42 -04:00
Python_error.rst
…
Python_examples.rst
update Pizza.py URLs
2021-07-25 21:04:26 -04:00
Python_execute.rst
…
Python_ext.rst
…
Python_formats.rst
…
Python_head.rst
…
Python_install.rst
update some more version change timestamps
2022-03-19 20:20:30 -04:00
Python_launch.rst
…
Python_module.rst
…
Python_neighbor.rst
…
Python_objects.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
Python_overview.rst
…
Python_properties.rst
…
Python_run.rst
…
Python_scatter.rst
…
Python_trouble.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
python.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
quit.rst
…
read_data.rst
Rename sphere/bpm, remove bond instance, add smooth option
2022-03-23 11:41:27 -06:00
read_dump.rst
small updates for docs and comments
2021-12-12 18:11:33 -05:00
read_restart.rst
…
region.rst
avoid duplication of Accelerator package info in additional doc pages
2021-10-11 16:49:59 -06:00
replicate.rst
…
rerun.rst
allow for command-line setting of initial temp
2021-08-26 11:52:07 -06:00
reset_atom_ids.rst
…
reset_mol_ids.rst
…
reset_timestep.rst
…
restart.rst
…
Run_basics.rst
small tweak
2021-09-27 17:13:32 -04:00
Run_head.rst
…
Run_options.rst
remove src/MESSAGE package and supporting dirs and doc pages
2022-04-07 15:44:48 -06:00
Run_output.rst
consolidate pair-wise vs pairwise spelling
2022-01-21 10:48:35 -05:00
run_style.rst
Explcitly state that fix nve uses velocity-Verlet integrator
2022-04-20 08:58:53 -06:00
Run_windows.rst
rename USER-OMP to OPENMP
2021-06-29 17:48:22 -04:00
run.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
set.rst
cosmetic
2022-04-17 17:47:38 -04:00
shell.rst
add support for '-f' option to shell rm built-in command
2022-03-17 15:17:44 -04:00
special_bonds.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
Speed_bench.rst
…
Speed_compare.rst
bulk rename of remaining USER- packages
2021-06-29 20:12:59 -04:00
Speed_gpu.rst
cosmetic changes for consistency
2021-09-07 19:12:59 -04:00
Speed_intel.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
Speed_kokkos.rst
consolidate pair-wise vs pairwise spelling
2022-01-21 10:48:35 -05:00
Speed_measure.rst
…
Speed_omp.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
Speed_opt.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
Speed_packages.rst
cosmetic changes for consistency
2021-09-07 19:12:59 -04:00
Speed_tips.rst
…
Speed.rst
update title in reference to accelerator section
2021-10-11 17:26:24 -04:00
suffix.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
tad.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
temper_grem.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
temper_npt.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
temper.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
thermo_modify.rst
fix minor doc issues
2022-04-21 13:00:26 -04:00
thermo_style.rst
fix minor doc issues
2022-04-21 13:00:26 -04:00
thermo.rst
refactor thermo output processing and add new yaml thermo style
2022-03-19 16:39:09 -04:00
third_order.rst
Updated and added third order kokkos
2021-12-14 14:25:49 -08:00
timer.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
timestep.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
Tools.rst
update manual
2022-02-12 10:37:09 -05:00
uncompute.rst
…
undump.rst
…
unfix.rst
…
units.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
variable.rst
add extract_setting special function to variable command
2022-03-28 08:00:29 -04:00
velocity.rst
allow for command-line setting of initial temp
2021-08-26 11:52:07 -06:00
write_coeff.rst
…
write_data.rst
fix up some more package designations and clean up some legacy formatting
2021-07-25 20:23:37 -04:00
write_dump.rst
…
write_restart.rst
…