- functionObjectLibs -> libs
- redirectType -> name
- change deprecated writeCompression flags types to Switch.
- cleanup some trailing ';;' from some dictionaries
- The problem is not 100% reproducible, but be somewhat conservative
and now only close(stdin) for pure background (daemon-like) use of
Foam::system(), where it can be useful.
Using Foam::system() for launching background processes is currently
only used for the doc browser.
- since 1612, FOAM_INST_DIR and foamInstDir longer have any
special meanings when sourcing the bashrc or cshrc files.
Thus no need for special treatment in any of the dispatch wrappers.
Retained FOAM_INST_DIR as (unexported) variable in etc/bashrc,
just in case people are using patched versions of etc/bashrc
as part of their installation.
ENH: relax prefix restrictions on foamCreateVideo (issue #904)
- shift the implicit '.' to be part of the default prefix. This allows
things like "-image myimages_00" to work as might be expected.
- respect trailing '-', '.', '_' for the image prefix name.
For example,
-image press_ to accept press_*.png
- additional -mask width option (for avconv)
- The additional output generated by #calc directives in the
controlDict or decomposeParDict causes issues for the RunFunctions
extraction of 'application' and 'numberOfSubdomains'.
Avoid by using -disableFunctionEntries, which also has the side-effect
of disabling '#include'.
- major() and minor() are GNU macros in sys/sysmacros.h
and generates warning on some systems (eg, Ubuntu 18.04)
use getMajor() and getMinor() as method names instead.
- corrected the mass based correction and updated the misleading function
arguments
- moved the option to the optimisation switches, e.g.:
OptimisationSwitches
{
experimentalDdtCorr 1;
}
- default remains off/no (0)
- Don't remove the constant/polyMesh directory if it contains a
blockMeshDict or blockMeshDict.m4 file. Offer a reminder that
system/ is the normal place for it.
- add additional control via a Foam::infoDetailLevel flag, which is
supported by a 'DetailLevel' macro. Eg,
DetailLevel << "some information" << nl
- When infoDetailLevel is zero, the stdout for all Foam::system() calls
are also redirected to stderr to prevent child output from
appearing on the parent.
- close stdin before exec in system call.
- convenient way to temporarily suspend the SIGFPE handler.
Eg,
// Normal code with SIGFPE enabled ...
sigFpe::set();
{
// Ignore SIGFPE in this scope ...
sigFpe::ignore noFpeHandling;
...
}
- use Enum instead of NamedEnum
- shorter form for dimensionedScalar
- reduce verbosity about missed seeding for DTRM cloud.
Re-enable old warnings in debug mode.
- some paraview versions (eg, on windows) don't support float, only double.
This mostly affected the vtkSurfaceWriter.
The foamToVTK is also affected, but since it also supports the XML
output formats (vtp, vtu) these can be used instead.
- affected manually generated legacy output (vtkSetWriter, vtkSurfaceWriter)
- the order emitted by vtkSetWriter remains, but needs to revisited again.
- this provides easily sortable names.
The time information is available via the corresponding .series
file, which can also be loaded directly with ParaView 5.5 or later.
For further redundancy, time information is saved in the first XML
comment inside of the .vtp files. For example,
<!-- cloud=limestoneCloud1 time=0.005 index=200 -->
- now report as "min = XX max = YY average = ZZ"
instead of as "min/max/average = XX, YY, ZZ"
this makes it easier to parse any particular value
(eg, with foamLog)
- should use bitSet::set() and not bitSet::operator[] to auto-vivify
out-of-range entries
- use bitSet::test() instead of bitSet::operator[] when testing
non-const variables - circumvents any potential out-of-range issues.
- Since 'bool' and 'Switch' use the _identical_ input mechanism
(ie, both accept true/false, on/off, yes/no, none, 1/0), the main
reason to prefer one or the other is the output.
The output for Switch is as text (eg, "true"), whereas for bool
it is label (0 or 1). If the output is required for a dictionary,
Switch may be appropriate. If the output is not required, or is only
used for Pstream exchange, bool can be more appropriate.
- Always used for optional dictionary entries, since these are individual
values, and not meant to be embedded in a larger stream of tokens.
Methods:
- lookupOrDefault, lookupOrAddDefault, lookupOrDefaultCompat
- readIfPresent, readIfPresentCompat
- Handling mandatory dictionary entries is slightly more complex,
since these may be part of larger stream of tokens, and are often
used in a constructor context. For example,
word modelType(dict.lookup("type"));
Or they are used without a definite context. For example,
dict.lookup("format") >> outputFormat;
Newly introduced methods for mandatory dictionary entries:
- get, getCompat
- read, readCompat
In a constructor or assignment context:
word modelType(dict.get<word>("type"));
outputFormat = dict.lookup("format");
without copy/move (similar to readIfPresent):
dict.read("format", outputFormat);
- improves backward compatibility and more naming consistency.
Retain setMany(iter1, iter2) to avoid ambiguity with the
PackedList::set(index, value) method.
Basic directional refinement:
- only for coordinate aligned meshes
- only for refinementRegions
See the mesh/snappyHexMesh/aerofoilNACA0012_directionalRefinement
tutorial.
- the current working path with replacements for base-level
OpenFOAM env variables such as FOAM_RUN, WM_PROJECT_DIR,
WM_PROJECT_USER_DIR etc
Can be used directly from the command-line or embedded into a
command prompt. For example,
PS1='$(foamPwd)\n\u\$ '
- aliases for user solver/utilities located under "$WM_PROJECT_USER_DIR":
(ufoam, uapp, usol, uutil)
- using const reference to temporary was failing. Remedy by using a
direct copy, which is a reasonable solution since surfZone content
is quite minimal.
- downgrades some diagnostics about nonconformant code from errors to
warnings. Oddly enough, the errors actually arise from STL library
elements shipped with gcc itself. Affects kahip compilation with
gcc-6, gcc-7
The minimum number of particles per parcel can now be set in the
injection model input, e.g.:
model1
{
type ...;
massTotal ...;
parcelBasisType ...;
minParticlesPerParcel 1; <-- new optional entry
SOI ...;
...
Uses a value of 1 by default if the entry is not present. The value of
1 is generally recommended and beneficial for coupled cases where small
time steps can lead to the injection of too many parcels and subsequently
greatly over-predict the particle source contributions (momentum, heat,
mass transfer etc)
- problems when the cloud was not available on all processors.
- NB: ensight measured data only allows a single cloud, but
foamToEnsight writes all clouds.
- these were previously taken from region-local directories
(eg, constant/region/triSurface), but this becomes difficult to
manage when there are many files and regions.
- The central InfoSwitch "writeLagrangianPositions" allows writing an
additional Lagrangian "positions" file, but these were not being
written by reconstructPar. These are now also written in reconstructPar
if the central writeLagrangianPositions InfoSwitch is enabled.
NOTES
- "positions" are reconstructed from the processors "coordinates" file
- decomposePar will not attempt to create or redistribute any
"positions" files
switch
The new lowReCorrection entry can be used to ensure that the low-Re
mode is only applied when its value is on/true, e.g.
lowReCorrection on;
When active, the low-Re mode is active when the local y+ is less than
the calculated y+_laminar. When inactive, the high-Re form is employed
irrespectively of the local y+.
It has a defaulrt value of off/false for backwards compatibility with
OpenFOAM v1706
Computes the heat transfer coefficient [W/m2/K] using a run-time
selectable model:
- ReynoldsAnalogy
- fixedReferenceTemperature
- localReferenceTemperature
further investigation on the consequences on dynamic mesh for compressibleInterDyMFoam.
alphaSuSp.H has to be added in the solver folder in order to make it compatible with the alpha Eq.
NOTE: The radiative flux (qr) is positive when the heat flux is going into the wall,
this is oposite the the he flux which is positive going out of the wall.
The characteristics of the base scheme are recovered by applying an
explicit correction to the upwind scheme weights.
Usage
Example of the \c deferredCorrection scheme applied to the \c linear
scheme:
\verbatim
divSchemes
{
.
.
div(phi,U) Gauss deferredCorrection linear;
.
.
}
\endverbatim
Based on a generalised form of a deferred correction linear scheme
supplied by CFD Software E+F GmbH
Based on the reference:
Spalart, P. R. and Rumsey, C. L. (2007).
Effective Inflow Conditions for Turbulence Models in Aerodynamic
Calculations
AIAA Journal, 45(10), 2544 - 2553.
The decay control default is off for backwards compatibility. To enable
it, add the following to the coefficients dictionary
// Optional decay control
decayControl yes;
kInf \<far-field k value\>;
omegaInf \<far-field omega value\>;
- regression introduced by part of commit 2787a8664d.
Specifically the way that scalarRanges is written, it parses through
until it hits invalid input. This works fine with an IStringStream,
but the ITstream is pickier and reports this as being an error.
So revert to IStringStream and be less picky about argList parsing.
in the longer-term, should fix scalarRanges instead.
- required if there is no system openmp and libomp or libgomp are
only found in the clang hierarchy
STYLE: add some notes in the openmp rules.
- the _OPENMP macro is now used in low-level testing files
- The -rotate-angle option allows convenient specification of a
rotation about an arbitrary axis. Eg, -rotate-angle '((1 1 1) 45)'
- The -origin option can be used to temporarily shift the origin
for the rotation operations. For example,
-origin '(0 0 1)' -rotate-angle '((1 0 0) 180)'
for mirroring.
heat rejection
The new optional entry targetQdot can be used to specify a target heat
rejection. This is additionally controlled using the
targetQdotCalcInterval and targetQdotRelax entries which default to
values of 5 and 0.5, respectively.
- relocate WM_COMPILER_ARCH, WM_COMPILER_LIB_ARCH from
etc/{bashrc,cshrc} to etc/config.{csh,sh}/settings since these
should not be changed by the user anyhow.
- Use gcc/g++ as common base and specialize afterwards (to reduce
duplication)
- adjust format of WM_PROJECT_SITE fallback to allow for easier
automated edits
- any code placed here should provide Allwmake and Allwclean scripts
and normally have compilation targets into FOAM_APPBIN, FOAM_LIBBIN
Since there is no standardize places for sources or applications,
a simultaneous build of a module's doxygen documentation requires
a minor bit of manual effort. Add (via symlink) the sources into
the modules/doc/ directory to have them included in the normal
OpenFOAM doxygen documentation generation.
A makelink.example file is provided there as an example.
This forms part of what is termed 'automatic wall treatment' in the
reference:
Menter, F., Carregal Ferreira, J., Esch, T., Konno, B. (2003).
The SST Turbulence Model with Improved Wall Treatment
for Heat Transfer Predictions in Gas Turbines.
Proceedings of the International Gas Turbine Congress 2003 Tokyo
Note
The full 'automatic wall treatment' description also requires use of
the Foam::omegaWallFunction with the \c blended flag set to 'on'
omegaWallFunction
- re-instated behaviour when not using 'blended'
- turbulence generation always included when using 'blended'
- 'blended' now true by default
epsilonWallFunction
- re-instated low-Re switching
- disallow insert() of raw pointers, since a failed insertion
(ie, entry already existed) results in an unmanaged pointer.
Either insert using an autoPtr, or set() with raw pointers or autoPtr.
- IOobjectList::add() now takes an autoPtr instead of an object reference
- IOobjectList::remove() now returns an autoPtr instead of a raw pointer
- use normal instead of volumeType to decide on the sign.
This provides a continuous field and eliminates special handling of
GREAT in iso-surface routines.
- fix regression in isoSurfaceCell cutting that was introduced by the
previous adjustments for distanceSurface
- input or output scaling of values to manage dissimilar unit systems
in the structures model
- logging of communicated force, moments and updated positions.
This allows tracking of the information exchange throughout the
duration of the simulation and may assist in post-simulation diagnosis.
- default is now without polyhedral decomposition, since this produces
compacter files and VTK mananges this in most instances.
However, provide function object flag to reinstate the old behaviour.
Calculates and outputs a field whose values are offset to a reference
value obtained by sampling the field at a user-specified location.
The field values are calculated using:
\f[
f_c = s(f_{c,t} - f_p + f_{off})
\f]
where
\vartable
f_c | field values at cell
s | optional scale factor (default = 1)
f_{c,t} | current field values at cell at this time
f_p | field value at position
f_{off} | offset field value (default = 0)
\endvartable
Usage
Example of function object specification to calculate the reference
field:
\verbatim
pRef
{
type reference;
libs ("libfieldFunctionObjects.so");
...
field p;
result pRef;
position (0 0 0);
scale 1.2;
offset 100000;
}
\endverbatim
- the problem arises since the various surface writers are stateless.
The collated output format hacks around this limitation by adding in
its own fieldDict caching (to disk).
Now include an updateMesh() method to hook into geometry changes.
This is considered a stop-gap measure until the surface output
handling is improved.
- improvement documentation for surface sampling.
- can now specify alternative sampling scheme for obtaining the
face values instead of just using the "cell" value. For example,
sampleScheme cellPoint;
This can be useful for cases when the surface is close to a boundary
cell and there are large gradients in the sampled field.
- distanceSurface now handles non-closed surfaces more robustly.
Unknown regions (not inside or outside) are marked internally and
excluded from consideration. This allows use of 'signed' surfaces
where not previously possible.
- a -valgrind option for logging with valgrind
- determine number of processors from system/decomposeParDict
or -decomposeParDict if -np was not specified
- this should normally not be triggered, provided that setRefCell was
used. However, if getRefCellValue() was called without any previous
checking on refCelli, it is possible to provoke errors.
- The iterator for a HashSet dereferences directly to its key.
- Eg,
for (const label patchi : patchSet)
{
...
}
vs.
forAllConstIter(labelHashSet, patchSet, iter)
{
const label patchi = iter.key();
...
}
- the algorithm was last used in OpenFOAM-2.4, after which it was
replaced with a FaceCellWave version.
Whereas the original (2.4.x) version exhibited performance
degradation on very large meshes (with explicit constraints), the
FaceCellWave version exhibited performance issues with large numbers
of blocked faces.
With large numbers of blocked faces, the FaceCellWave regionSplit
could take between 10 to 100 times longer due to the slow
propagation speed through blocked faces.
The 2.4 regionSplit has been revamped to avoid local memory
allocations, which appears to have been the source of the original
performance issues on large meshes.
For additional performance, intermediate renumbering is also avoided
during the consolidation of regions over processor domains.
- controlled by the the 'printExecutionFormat' InfoSwitch in
etc/controlDict
// Style for "ExecutionTime = " output
// - 0 = seconds (with trailing 's')
// - 1 = day-hh:mm:ss
ExecutionTime = 112135.2 s ClockTime = 113017 s
ExecutionTime = 1-07:08:55.20 ClockTime = 1-07:23:37
- Callable via the new Time::printExecutionTime() method,
which also helps to reduce clutter in the applications.
Eg,
runTime.printExecutionTime(Info);
vs
Info<< "ExecutionTime = " << runTime.elapsedCpuTime() << " s"
<< " ClockTime = " << runTime.elapsedClockTime() << " s"
<< nl << endl;
--
ENH: return elapsedClockTime() and clockTimeIncrement as double
- previously returned as time_t, which is less portable.
For example, with some HashTable or Map container of models
{ model0 => 1, model1 => 4, model2 => 5, model3 => 12, model4 => 15, }
specify the remapping
Map<label> mapper({{1, 3}, {2, 6}, {3, 12}, {5, 8}});
inplaceMapValue(mapper, models) then yields
{ model0 => 3, model1 => 4, model2 => 8, model3 => 12, model4 => 15, }
--
ENH: extend bitSet::count() to optionally count unset bits instead.
--
ENH: BitOps compatibility methods for boolList.
- These ease coding that uses a boolList instead of bitSet and use
short-circuit logic when possible.
Eg, when 'bitset' and 'bools' contain the same information
bitset.count() <-> BitOps::count(bools)
bitset.all() <-> BitOps::all(bools)
bitset.any() <-> BitOps::any(bools)
bitset.none() <-> BitOps::none(bools)
These methods can then be used directly in parameters or in logic.
Eg,
returnReduce(bitset.any(), orOp<bool>());
returnReduce(BitOps::any(bools), orOp<bool>());
if (BitOps::any(bools)) ...
- since PackedBoolList is now a compatibility typedef for bitSet,
it is useful to have an additional means of distinction.
STYLE: simplify internal version tests and compiler defines.
- the API version is now conveyed via the OPENFOAM define directly.
The older OPENFOAM_PLUS define is provided for existing code.
- parsing error state only arises from a missing final newline
in the file (which the dnl macro does not capture).
Report with a warning instead of modifying the dnl macro since
we generally wish to know about this anyhow.
- add missing newline to YEqn.H file.
- flags the following type of problems:
* mismatches:
keyword mismatch ( set of { brackets ) in the } entry;
* underflow (too many closing brackets:
keyword too many ( set of ) brackets ) in ) entry;
- a missing semi-colon
dict
{
keyword entry with missing semi-colon
}
will be flagged as 'underflow', since it parses through the '}' but
did not open with it.
Max monitoring depth is 60 levels of nesting, to avoid incurring any
memory allocation.
- handling of dead links (find -L -delete unsupported)
- remove ignore case flag on 's/../../i' used in have_scotch script.
It is unneeded and not tolerated by Darwin's sed.
- avoid embedded comments in EXE_INC (Make/options files), which do
not work well with the OSX LLVM cpp.
It strips out the comments but also removes the continuation char.
STYLE: adjust notes about paraview library locations
- generalize some of the library extensions (.so vs .dylib).
Provide as wmake 'sysFunctions'
- added note about unsupported/incomplete system support
- centralize detection of ThirdParty packages into wmake/ subdirectory
by providing a series of scripts in the spirit of GNU autoconfig.
For example,
have_boost, have_readline, have_scotch, ...
Each of the `have_<package>` scripts will generally provide the
following type of functions:
have_<package> # detection
no_<package> # reset
echo_<package> # echoing
and the following type of variables:
HAVE_<package> # unset or 'true'
<package>_ARCH_PATH # root for <package>
<package>_INC_DIR # include directory for <package>
<package>_LIB_DIR # library directory for <package>
This simplifies the calling scripts:
if have_metis
then
wmake metisDecomp
fi
As well as reducing clutter in the corresponding Make/options:
EXE_INC = \
-I$(METIS_INC_DIR) \
-I../decompositionMethods/lnInclude
LIB_LIBS = \
-L$(METIS_LIB_DIR) -lmetis
Any additional modifications (platform-specific or for an external build
system) can now be made centrally.
- also simplify parsing by accepting any case on keywords.
This implies that something like "sOlId", "SoLiD" will also
be accepted. Although nobody should really count on this rather
generous behaviour, it does simplfy the state machine even further.
- in 2.4.x the general default for polyMesh::findCell was FACE_DIAG_TRIS,
but this was changed to CELL_TETS for better handling of concave
cells.
- in snappyHexMesh meshRefinement, findCell is used to define
locations in mesh and cells for closer refinement. Using CELL_TETS
causes an octree rebuild when the mesh has changed and this adds
considerable overhead. For this operation, the faster FACE_DIAG_TRIS
mode can be used instead.
- the previous grammar used
'/*' { fgoto comment; }
to start processing multi-line comments and
comment := any* :>> '*/' @{ fgoto main; };
as a finishing action to return to normal lexing, but seemed not to
have been triggered properly.
Now simply trap in a single rule:
'/*' any* :>> '*/'; # Multi-line comment
STYLE: use more compact dnl (delete to newline)
OLD: [^\n]* '\n'
NEW: (any* -- '\n') '\n'
eliminates the intermediate state
- the API-versioned calls (eg, tecini142, teczne142, tecpoly142, tecend142),
the limited availability of the SDK and lack of adequate testing make
proper maintenance very difficult.
- these errors are mostly rounding related (when a point is located on
the edge of a bounding box instead of being fully inside it).
For debug > 1, continue to treat as fatal.
- IOstreamOption class to encapsulate format, compression, version.
This is ordered to avoid internal padding in the structure, which
reduces several bytes of memory overhead for stream objects
and other things using this combination of data.
Byte-sizes:
old IOstream:48 PstreamBuffers:88 Time:928
new IOstream:24 PstreamBuffers:72 Time:904
====
STYLE: remove support for deprecated uncompressed/compressed selectors
In older versions, the system/controlDict used these types of
specifications:
writeCompression uncompressed;
writeCompression compressed;
As of DEC-2009, these were deprecated in favour of using normal switch
names:
writeCompression true;
writeCompression false;
writeCompression on;
writeCompression off;
Now removed these deprecated names and treat like any other unknown
input and issue a warning. Eg,
Unknown compression specifier 'compressed', assuming no compression
====
STYLE: provide Enum of stream format names (ascii, binary)
====
COMP: fixed incorrect IFstream construct in FIREMeshReader
- spurious bool argument (presumably meant as uncompressed) was being
implicitly converted to a versionNumber. Now caught by making
IOstreamOption::versionNumber constructor explicit.
- bad version specifier in changeDictionary
- In addition to the traditional Flex-based parser, added a Ragel-based
parser and a handwritten one.
Some representative timings for reading 5874387 points (1958129 tris):
Flex Ragel Manual
5.2s 4.8s 6.7s total reading time
3.8s 3.4s 5.3s without point merging
- However, the new ragel-based parser is much faster
than the others, and does not cause 'too many open files' error
that the flex-based parser does (issue #784).
The timings (using src/sampling as being somewhat representative)
$ wclean; wmakeLnInclude -u .; time wmake -s dep
3.4s wmkdepend (ragel) [now default]
5.7s wmkdep (flex)
6.1s cpp -M
- The makeDepend script is for testing purposes only, but could used as
a hook for other dependency generation systems (eg, ninja).
It simply wraps 'cpp -M' in a form that is calling compatible with
wmkdepend.
BUG: wmkdepend parser was missing optional leading space on #include match
STYLE: use -G2 (goto-based) option for wmkdepend state machine
- the machine is compact with few states and lends itself to this
- the expansions were previously required as slash to follow, but
now either are possible.
"<case>", "<case>/" both yield the same as "$FOAM_CASE" and
will not have a trailing slash in the result. The expansion of
"$FOAM_CASE/" will however have a trailing slash.
- adjust additional files using these expansions
- a partial selection from https://github.com/mrklein/openfoam-os-x
with adjustments. The primary purpose is to reduce header-level
incompatibilities and to provide a common set of make rules to allow
easier patching (or re-integration).
This is similar to efforts (Feb 2010) but using ragel
(https://en.wikipedia.org/wiki/Ragel) instead of the now defunct
coco/r. The modified commit message from 2010:
ENH: add C++-based wmkdepend parser (uses ragel grammar).
- This avoids dependency on lex/flex and provides better encapsulation
for buffer switching. As a result, the maximum number of open files
only corresponds to the include depth.
--
Note that the flex source and rules are still available, but are not
deactivate (see wmake/rules/General/transform)
Support the following expansions when they occur at the start of a
string:
Short-form Equivalent
========= ===========
<etc>/ ~OpenFOAM/ (as per foamEtcFile)
<case>/ $FOAM_CASE/
<constant>/ $FOAM_CASE/constant/
<system>/ $FOAM_CASE/system/
These can be used in fileName expansions to improve clarity and reduce
some typing
"<constant>/reactions" vs "$FOAM_CASE/constant/reactions"
ParaView 5.4 and older:
- requires lib/paraview-X.X only
ParaView 5.5:
- requires lib/
- does not appear to require lib/paraview-X.X, but retained for simplicity
- Change default version to paraview-5.5.0 for testing purposes
- this removes an OS-specific dependency (eg, drand48_r is not POSIX)
and allows easier use of other random number generators.
The Rand48 generator has identical behaviour and period as the
lrand48() library routine, but holds its own seed and state
(which makes it re-entrant) and can be combined with other
random distributions.
However, when using the modified form to obtain scalar values
they will not be identical to what drand48() yields.
This is because drand48() uses the raw 48-bit values to directly
set the mantissa of an IEEE double where as the newer distribution
normalizes based on the 32-bit value.
STYLE: simplify code in Random::shuffle and use Swap
keeping chocked conditions of Mach number.
This BC can work in two modes, chocked or non-chocked. In the
chocked mode the Ma is an input. In the non-chocked mode
the Ma is calculated from model inputs.
- in many cases can just use lookupOrDefault("key", bool) instead of
lookupOrDefault<bool> or lookupOrDefault<Switch> since reading a
bool from an Istream uses the Switch(Istream&) anyhow
STYLE: relocated Switch string names into file-local scope
- improve internal handling to permit deriving resizable containers
(eg, PtrDynList).
- include '->' iterator dereferencing
- Only append/set non-const autoPtr references. This doesn't break
existing code, but makes the intention more transparent.
- both autoPtr and tmp are defined with an implicit construct from
nullptr (but with explicit construct from a pointer to null).
Thus is it safe to use 'nullptr' when returning an empty autoPtr or tmp.
The set of injectionMethods has been extended to include a new option:
injectionMethod movingPoint;
The position is then read as a TimeFunction1 entry, e.g. for a 'table'
type:
position table
(
(0 (-0.009 0.0995 0))
(1e-3 (0.009 0.0995 0))
);
where the list corresponds to the tuples (time (position)), and the time
is relative to the start of injection (SOI)
- when constructing dimensioned fields that are to be zero-initialized,
it is preferrable to use a form such as
dimensionedScalar(dims, Zero)
dimensionedVector(dims, Zero)
rather than
dimensionedScalar("0", dims, 0)
dimensionedVector("zero", dims, vector::zero)
This reduces clutter and also avoids any suggestion that the name of
the dimensioned quantity has any influence on the field's name.
An even shorter version is possible. Eg,
dimensionedScalar(dims)
but reduces the clarity of meaning.
- NB: UniformDimensionedField is an exception to these style changes
since it does use the name of the dimensioned type (instead of the
regIOobject).
- also ensure fewer side-effects from inplaceReorder
- provide ListOps::reorder especially for PackedList and PackedBoolList
since they behave differently from regular lists.
- eliminate iterators from PackedList since they were unused, had
lower performance than direct access and added unneeded complexity.
- eliminate auto-vivify for the PackedList '[] operator.
The set() method provides any required auto-vivification and
removing this ability from the '[]' operator allows for a lower
when accessing the values. Replaced the previous cascade of iterators
with simpler reference class.
PackedBoolList:
- (temporarily) eliminate logic and addition operators since
these contained partially unclear semantics.
- the new test() method tests the value of a single bit position and
returns a bool without any ambiguity caused by the return type
(like the get() method), nor the const/non-const access (like
operator[] has). The name corresponds to what std::bitset uses.
- more consistent use of PackedBoolList test(), set(), unset() methods
for fewer operation and clearer code. Eg,
if (list.test(index)) ... | if (list[index]) ...
if (!list.test(index)) ... | if (list[index] == 0u) ...
list.set(index); | list[index] = 1u;
list.unset(index); | list[index] = 0u;
- deleted the operator=(const labelUList&) and replaced with a setMany()
method for more clarity about the intended operation and to avoid any
potential inadvertent behaviour.
- clockValue class for managing the clock values only, with a null
constructor that does not query the system clock (can defer to later).
Can also be used directly for +/- operations.
- refactor clockTime, cpuTime, clock to reduce storage.
- The bitSet class replaces the old PackedBoolList class.
The redesign provides better block-wise access and reduced method
calls. This helps both in cases where the bitSet may be relatively
sparse, and in cases where advantage of contiguous operations can be
made. This makes it easier to work with a bitSet as top-level object.
In addition to the previously available count() method to determine
if a bitSet is being used, now have simpler queries:
- all() - true if all bits in the addressable range are empty
- any() - true if any bits are set at all.
- none() - true if no bits are set.
These are faster than count() and allow early termination.
The new test() method tests the value of a single bit position and
returns a bool without any ambiguity caused by the return type
(like the get() method), nor the const/non-const access (like
operator[] has). The name corresponds to what std::bitset uses.
The new find_first(), find_last(), find_next() methods provide a faster
means of searching for bits that are set.
This can be especially useful when using a bitSet to control an
conditional:
OLD (with macro):
forAll(selected, celli)
{
if (selected[celli])
{
sumVol += mesh_.cellVolumes()[celli];
}
}
NEW (with const_iterator):
for (const label celli : selected)
{
sumVol += mesh_.cellVolumes()[celli];
}
or manually
for
(
label celli = selected.find_first();
celli != -1;
celli = selected.find_next()
)
{
sumVol += mesh_.cellVolumes()[celli];
}
- When marking up contiguous parts of a bitset, an interval can be
represented more efficiently as a labelRange of start/size.
For example,
OLD:
if (isA<processorPolyPatch>(pp))
{
forAll(pp, i)
{
ignoreFaces.set(i);
}
}
NEW:
if (isA<processorPolyPatch>(pp))
{
ignoreFaces.set(pp.range());
}
- primary points for an external user are the polyMesh constructor
- add config info for gcc-7.3.0
COMP: intel-2017. Ignore unknown pragmas. Disambiguate method resolution.
This class is largely a pre-C++11 holdover. It is now possible to
simply use move construct/assignment directly.
In a few rare cases (eg, polyMesh::resetPrimitives) it has been
replaced by an autoPtr.
- rvalue() is a (transitional) means of converting Xfer content to a
reference for move construct, move assign semantics.
- valid() method for consistency with autoPtr and tmp classes
Improve alignment of its behaviour with std::shared_ptr
- element_type typedef
- swap, reset methods
* additional reference access methods:
cref()
returns a const reference, synonymous with operator().
This provides a more verbose alternative to using the '()' operator
when that is desired.
Mnemonic: a const form of 'ref()'
constCast()
returns a non-const reference, regardless if the underlying object
itself is a managed pointer or a const object.
This is similar to ref(), but more permissive.
Mnemonic: const_cast<>
Using the constCast() method greatly reduces the amount of typing
and reading. And since the data type is already defined via the tmp
template parameter, the type deduction is automatically known.
Previously,
const tmp<volScalarField>& tfld;
const_cast<volScalarField&>(tfld()).rename("name");
volScalarField& fld = const_cast<volScalarField&>(tfld());
Now,
tfld.constCast().rename("name");
auto& fld = tfld.constCast();
--
BUG: attempts to move tmp value that may still be shared.
- old code simply checked isTmp() to decide if the contents could be
transfered. However, this means that the content of a shared tmp
would be removed, leaving other instances without content.
* movable() method checks that for a non-null temporary that is
unique (not shared).
Improve alignment of its behaviour with std::unique_ptr
- element_type typedef
- release() method - identical to ptr() method
- get() method to get the pointer without checking and without releasing it.
- operator*() for dereferencing
Method name changes
- renamed rawPtr() to get()
- renamed rawRef() to ref(), removed unused const version.
Removed methods/operators
- assignment from a raw pointer was deleted (was rarely used).
Can be convenient, but uncontrolled and potentially unsafe.
Do allow assignment from a literal nullptr though, since this
can never leak (and also corresponds to the unique_ptr API).
Additional methods
- clone() method: forwards to the clone() method of the underlying
data object with argument forwarding.
- reset(autoPtr&&) as an alternative to operator=(autoPtr&&)
STYLE: avoid implicit conversion from autoPtr to object type in many places
- existing implementation has the following:
operator const T&() const { return operator*(); }
which means that the following code works:
autoPtr<mapPolyMesh> map = ...;
updateMesh(*map); // OK: explicit dereferencing
updateMesh(map()); // OK: explicit dereferencing
updateMesh(map); // OK: implicit dereferencing
for clarity it may preferable to avoid the implicit dereferencing
- prefer operator* to operator() when deferenced a return value
so it is clearer that a pointer is involve and not a function call
etc Eg, return *meshPtr_; vs. return meshPtr_();
- constexpr, noexcept.
Added an 'at()' method for returning an iterator within the range
and changed operator()(label) to have behaviour as per found().
This makes the labelRange usable as a unary predicate.
- added templated conversion class 'toLabelRange'
- add range() method to polyPatch and surfZone classes, and corresponding
templated conversion functors.
For example,
auto patchDims = ListOps::create<labelRange>
(
mesh.boundaryMesh(),
toLabelRange<polyPatch>()
);
to create a List<labelRange> representing the patch extents.
- relocated HashSetPlusEqOp and HashTablePlusEqOp to
HashSetOps::plusEqOp and HashTableOps::plusEqOp, respectively
- additional functions for converting between a labelHashSet
and a PackedBoolList or List<bool>:
From lists selections to labelHashSet indices:
HashSetOps::used(const PackedBoolList&);
HashSetOps::used(const UList<bool>&);
From labelHashSet to list forms:
PackedBoolList bitset(const labelHashSet&);
List<bool> bools(const labelHashSet&);
- relocated ListAppendEqOp and ListUniqueEqOp to ListOps::appendEqOp
and ListOps::UniqueEqOp, respectively for better code isolation and
documentation of purpose.
- relocated setValues to ListOps::setValue() with many more
alternative selectors possible
- relocated createWithValues to ListOps::createWithValue
for better code isolation. The default initialization value is itself
now a default parameter, which allow for less typing.
Negative indices in the locations to set are now silently ignored,
which makes it possible to use an oldToNew mapping that includes
negative indices.
- additional ListOps::createWithValue taking a single position to set,
available both in copy assign and move assign versions.
Since a negative index is ignored, it is possible to combine with
the output of List::find() etc.
STYLE: changes for PackedList
- code simplication in the PackedList iterators, including dropping
the unused operator() on iterators, which is not available in plain
list versions either.
- improved sizing for PackedBoolList creation from a labelUList.
ENH: additional List constructors, for handling single element list.
- can assist in reducing constructor ambiguity, but can also helps
memory optimization when creating a single element list.
For example,
labelListList labels(one(), identity(mesh.nFaces()));
- constexpr, noexcept on various bits
- addition of a 'one::minus' class that returns '-1' instead of '1'.
There are no additional operations defined for this class,
but it can be used in various places to signal alternative behaviour
such as "initialize to a negative or other invalid value"
- This class is largely a pre-C++11 holdover, prior to having movable
references.
- align internals with autoPtr instead of always unconditionally
allocating memory. The valid() method can be used to check for a null
pointer.
- Consolidate into a single file, in anticipation of future removal.
- deprecated MAR-2017
subset(const UList<T>& select, const T& value, const ListType&);
inplaceSubset(const UList<T>& select, const T& value, ListType&);
The subsetList/inplaceSubsetList variants with a unary predicate
provide more flexible and robuster solutions.
- deprecated MAR-2017
initList(const T[mRows]);
initListList(const T[mRows][nColumns]);
Required prior to the addition of constructors with
std::initializer_list
* For most cases, this conversion would be largely unintentional
and also less efficient. If the regex is desirable, the caller
should invoke it explicitly.
For example,
findStrings(regExp(str), listOfStrings);
Or use one of the keyType, wordRe, wordRes variants instead.
If string is to be used as a plain (non-regex) matcher,
this can be directly invoked
findMatchingStrings(str, listOfStrings);
or using the ListOps instead:
findIndices(listOfStrings, str);
* provide function interfaces for keyType.
- subsetList, inplaceSubsetList with optional inverted logic.
- use moveable elements where possible.
- allow optional starting offset for the identity global function.
Eg, 'identity(10, start)' vs 'identity(10) + start'
- more consistent with STL practices for function classes.
- string::hash function class now operates on std::string rather
than Foam::string since we have now avoided inadvertent use of
string conversion from int in more places.
- Eg instead of using labelHashSet, used HashSet<label> which uses
the string::hash for hashing. Other places inadvertently using the
string::hash instead of Hash<label> for hashing.
STYLE: use Map<..> instead of HashTable<.., label, Hash<label>>
- reduces clutter
- add copy construct from UList
- remove copy construct from dissimilar types.
This templated constructor was too generous in what it accepted.
For the special cases where a copy constructor is required with
a change in the data type, now use the createList factory method,
which accepts a unary operator. Eg,
auto scalars = scalarList::createList
(
labels,
[](const label& val){ return 1.5*val; }
);
- now warn about the following:
* the bounding box does not overlap wih the global mesh
* plane does not intersect the (valid) bounding box
* plane does not intersect the global mesh
- add bounding to the "plane" variant of a sampled plane.
- simplify structure, removed unused constuctors.
- transfer from base objects via '=' assignment removed as being too
non-transparent
- add New factory method with perfect forwarding.
- use std::reverse_iterator adaptors, avoid the array-bounds warning
- use pointer arithmetic instead of dereferencing the internal array
- adjust logic to use 'operator<' instead of 'operator>' in sorting.
This creates less work when making other classes sortable.
- the transfer method was previously a copy
- use std::reverse_iterator adaptors in FixedList
This greatly reduces the amount of code and now avoids the array-bounds
warning for FixedList::rend()
- use pointer arithmetic instead of dereferencing the internal array
- without these will use the normal move construct + move assign.
This is similarly efficient, but avoids the inadvertently having the
incorrect Swap being used for derived classes.
STYLE: remove unused xfer methods for HashTable, HashSet
- unneeded since move construct and move assignment are possible
- can stop producing content when the target number of entries has
been reached.
- change return type to labelList instead an Xfer container.
This allows return-value-optimization and avoids a surrounding
allocation. This potentially breaks existing code.
- make PackedList and PackedBoolList moveable. Drop xfer wrappers.
- forward command-line arguments for paraview, where they may also be
evaluated (cshrc, POSIX shell)
Eg,
. etc/bashrc ParaView_VERSION=5.4.1-mpipy
source etc/cshrc ParaView_VERSION=5.4.1-mpipy
- this currently just strips off the leading parent directory name
"/this/path/and/subdirs/name"
relative("/this/path") -> "and/subdirs/name"
relative("/this") -> "path/and/subdirs/name"
'delta'
The scheme should now be specified using, e.g.
div(phi,U) Gauss DEShybrid
linear // scheme 1
linearUpwind grad(U) // scheme 2
hmax // LES delta name, e.g. 'delta', 'hmax'
0.65 // DES coefficient, typically = 0.65
30 // Reference velocity scale
2 // Reference length scale
0 // Minimum sigma limit (0-1)
1 // Maximum sigma limit (0-1)
1.0e-03; // Limiter of B function, typically 1e-03
- simplify structure.
- protect against nullptr when resetting memory streams
- make UIListStream swappable
- add uiliststream as an example of using a plain std::istream
- define regExp::results_type using SubStrings container for handling
groups. This makes a later shift to std::smatch easier, but changes
the regExp API for matching with groups. Previously had list element
0 for regex group 1, now list element 0 is the entire match and list
element 1 is regex group 1.
Old:
List<std::string> mat;
if (re.match(text, mat)) Info<< "group 1: " << mat[0] << nl;
New:
regExp::results_type mat;
if (re.match(text, mat)) Info<< "group 1: " << mat.str(1) << nl;
- problems were introduced by the change ee252307d3 (issue #686).
Affected reading of OBJ files.
The fallback zone (used to catch unnamed groups/zones), which was
previously filtered away when not needed. Now handle more explicitly.
ENH: use stringOps::split and low-level read{Label,Scalar} for parsing OBJ file
- export library path for gmp/mpfr from CGAL config files.
This is required when non-system gmp/mpfr libraries are being
used, but not using a ThirdParty compiler installation.
- automatically handle lib/ vs lib64/ (eg, for central installations)
for packages such as boost, CGAL, etc. While the ThirdParty
compilation of these will normally land in lib64/, this may not be
the case when they are supplied by another means.
- reworked the handling of foamEtcFile and foamCleanPath for less
clutter in the configuration files.
Added the bin/tools/lib-dir script to handle logic that is
too complex to easily manage in csh.
The total number of escaped|stick particles in patches can now be sorted by the injectorID from
which the particle originated. It uses outputByInjectorId keyword in the localInteractionCoeffs
dictionary
- for tutorials that are known to run poorly, can provide a
placeholder Allrun-optional instead of the usual Allrun script.
If this is detected, the case will be skipped.
- can be used to handle when options become redundant, but it is
undesirable to treat its presence as an error. Can now tag it as
being ignored.
argList::ignoreOptionCompat({"oldOption", 1706}, true);
argList::ignoreOptionCompat({"oldBoolOpttion", 1706}, false);
command -oldOption xyz -oldBoolOpttion
- use succincter method names that more closely resemble dictionary
and HashTable method names. This improves method name consistency
between classes and also requires less typing effort:
args.found(optName) vs. args.optionFound(optName)
args.readIfPresent(..) vs. args.optionReadIfPresent(..)
...
args.opt<scalar>(optName) vs. args.optionRead<scalar>(optName)
args.read<scalar>(index) vs. args.argRead<scalar>(index)
- the older method names forms have been retained for code compatibility,
but are now deprecated
- now avoid Istream and token mechanism in favour of a simpler string
parser. This makes the code clearer, smaller, robuster.
- provide convenience ge/gt/le/lt static constructors for scalarRange
for using bounds directly with specifying via a string parameter.
- scalarRange, scalarRanges now follow the unary predicate pattern
(using an operator() for testing). This allows their reuse in
other contexts. Eg, for filtering operations:
myHash.filterValues(scalarRange::ge(100));
- remove unused scalarRanges methods that were specific to handling
lists of time values. These were superseded by timeSelector methods
several versions ago.
- list all regions from constant/regionProperties:
* foamListRegions
- list specific region type from constant/regionProperties:
* foamListRegions fluid
* foamListRegions solid
- this is a provision for defining execute actions that can be called
largely independently of the normal time-loop constraints. This can
be useful to provide hooks for sub-cycling, or to define an action
that can be triggered manually or on some other event.
- support move construct/assignment for linked-lists themselves
and when moving into a 'normal' list
- better consistency with begin/end signatures and the various
iterators.
- for indirect linked-lists, provide iterator access to the underlying
data element address: iter.get() vs &(iter())
- add standard '->' indirection for iterators (as per normal STL
definitions)
- label-size 64 build, compiler warnings, unused template argument,
faMatrix::clone() method
STYLE: faScalarMatrix - moved info message to within a debug scope
- allows changing the format of the sending OPstream at an arbitrary
point in the transmission. The information is passed through the
buffer and the receiving IPstream changes its format accordingly.
This allows a temporary toggling of ASCII/BINARY mid-stream.
- the return value signals if this method handled this particular type
of token. This minor change allows this method to be used as a succinct
prefilter an output token stream. It also provides better encapsulation
of what the particular output stream handles.
Eg,
bool ok = os.write(tok);
if (!ok) // or if (!ok && os.good())
{
os << tok;
}
instead of
if (tok.type() == typeA || tok.type() == typeB || ...)
{
os.write(tok);
}
else
{
os << tok;
}
- when dictionary keywords change between versions, the programmer
can use these compatibility methods to help with migration.
* csearchCompat, foundCompat, lookupEntryPtrCompat, lookupEntryCompat,
lookupCompat, lookupOrDefaultCompat, readIfPresentCompat, ...
They behave like their similarly named base versions, but accept an
additional list of older keyword names augmented by a version number.
For example,
dict.readIfPresentCompat
(
"key", {{"olderName", 1612}, {"veryOld", 240}},
myscalar
);
where 1612=OpenFOAM-v1612, 240=OpenFOAM-v2.4.x, etc.
- If the entry could be directly inserted: a pointer to the inserted entry.
- If a dictionary merge was required: a pointer to the dictionary that
received the entry.
- Return nullptr on any type of insertion failure.
This change is code compatible with existing code since it only alters
a bool return value to be a pointer return value.
- improved memory alignment reduces overhead for Int32 compilation
- added move/swap semantics
- made the type() readonly in favour of setVariant() to allow change
of variant within a particular storage representation.
Eg, STRING -> VERBATIMSTRING.
so the write thread does not have to do any parallel communication. This avoids
the bugs in the threading support in OpenMPI.
Patch contributed by Mattijs Janssens
Resolves bug-report https://bugs.openfoam.org/view.php?id=2669
- include amount of free system memory in profiling, which can give an
indication of when swapping is about to start
- profilingSummary utility to collect profiling from parallel
calculations. Collects profiling information from processor
directories and summarize the time spent and number of calls as (max
avg min) values.
- waitForSlave now return a Time::stopAtControls enumeration:
unknown: when lockfile has no specially recognized content.
endTime: when lockfile contains "status=done"
writeNow: when lockfile contains "action=writeNow"
nextWrite: when lockfile contains "action=nextWrite"
noWriteNow: when lockfile contains "action=noWriteNow"
These values can be used by the caller to terminate the master
(OpenFOAM) as desired in response to information placed there by the
slave process.
- expose the names of write and stopAt controls for reuse elsewhere and
provide a stopAtControls enum for 'unknown'
- track the requested number of sub-cycles (was previously a bool)
- the readList<T>(Istream&) function was introduced to handle command
-options with either a single or a list value, but was also used for
the #remove dictionary directive. However, the parsing was fragile
if the list did not start with a '('.
Now handle command-line arg/option list directly (via ITstream)
and #remove with special-purpose reading of a string or word list.
This removes ambiguity and reduces potential future problems.
STYLE: use ITstream instead of IStringStream for command-line lookups
- parses directly to a tokenList without a string copy.
- unknown options or missing option values now emit a shorter message
without the entire usage. This makes it easier to identify the errors
and is better aligned with the behaviour of GNU system tools.
====
$ simpleFoam -case
Using: OpenFOAM-plus (see www.OpenFOAM.com)
Build: plus-01234
Error: option '-case' requires an argument
See 'simpleFoam -help' for usage
====
- provide for reduced (-help) and full (-help-full) usage information.
In many cases the reduced usage provided sufficient and easier
to find the information.
- make -srcDoc an alias for -doc-source
- no warnings about option aliases for future dates.
- split now optionally retains empty substrings.
Added split on fixed field width.
- Foam::name() now formats directly into string buffer, which a
removes one layer of copying and also avoids using a non-constexpr
in the temporary.
STYLE: explicit type narrowing on zero-padded output for ensight
- allows (for example) splitting a user string on whitespace and
passing this to system as a list of arguments, thus bypassing any
implicit use of 'sh'.
- system() with optional background, for spawning processes.
- this makes them applicable to Foam::string, Foam::word etc
ENH: improvements to CStringList
- add strings() sublist variant which can be useful when handling
command arguments separately
- add construct from SubStrings.
- in rare cases we may wish to have command-line arguments that are
non-mandatory. This can now be reflected in the usage output, provided
that the argList::nonMandatoryArgs() has been used.
- added setRootCaseNonMandatoryArgs.H that applies the
argList::nonMandatoryArgs() settings and otherwise performs largely
as per setRootCase.H, except that the check for mandatory arguments
is deferred to later user code.
- constructor for empty cell/face/point Zones, with contents to be
transferred in later.
- ZoneMesh::operator(const word&) to return existing zone or a new empty one.
- this provides a better typesafe means of locating predefined cell
models than relying on strings. The lookup is now ptr() or ref()
directly. The lookup functions behave like on-demand singletons when
loading "etc/cellModels".
Functionality is now located entirely in cellModel but a forwarding
version of cellModeller is provided for API (but not ABI) compatibility
with older existing user code.
STYLE: use constexpr for cellMatcher constants
- warn or fatal if Pstream::init or Pstream::exit are called multiple
times.
- additional Pstream::initNull method as failsafe to initialize MPI
when the underlying OpenFOAM process is not running in parallel but
the application still needs MPI.
- Pstream::exit() can now also be called without having used MPI::init(),
which means it can be used to cleanup serial process or for
applications that used the special purpose Pstream::initNull()
mechanism.
- the dictionary-driven variant of stitchMesh allows sequential
application of 'stitch' operation with requiring intermediate
writing to disk.
- Without arguments:
* stitchMesh uses a system/stitchMeshDict or -dict dict
- With arguments:
* master/slave patches specified on the command-line as in previous
versions.
Within decomposeParDict, it is now possible to specify a different
decomposition method, methods coefficients or number of subdomains
for each region individually.
The top-level numberOfSubdomains remains mandatory, since this
specifies the number of domains for the entire simulation.
The individual regions may use the same number or fewer domains.
Any optional method coefficients can be specified in a general
"coeffs" entry or a method-specific one, eg "metisCoeffs".
For multiLevel, only the method-specific "multiLevelCoeffs" dictionary
is used, and is also mandatory.
----
ENH: shortcut specification for multiLevel.
In addition to the longer dictionary form, it is also possible to
use a shorter notation for multiLevel decomposition when the same
decomposition method applies to each level.
- only warn about missing cells/points if the mesh is also missing
boundary patches.
- reduce verbosity when decomposing to an empty mesh
- skip face matching when either mesh has no faces
- this compact form shows the subscription per host in the unsorted
mpi order
nProcs : 18
Hosts :
(
(node1 6)
(node2 8)
(node3 4)
)
This provides a succinct overview of which hosts have been
subscribed or oversubscribed.
- The longer list of "slave.pid" ... remains available on the
InfoSwitch 'writeHosts'
- the -dir option was added in commit c1c6243c3e to allow quick
testing of documentation for a set of classes.
This was largely replicated in commit 843d83117, but accepting
multiple directories.
Apply some of the same ideas here and avoid creation of a tmp file.
Correcting thermoSingleLayer.C mask field alpha to avoid heat sources where there is no film.
Tunning fvSolution for alpha for twoPhasePachuka tutorial
Previously:
- bad command-line input such as -label 1234xyz would parse as a
label (with value 1234) and the trailing junk would be silently
ignored. This may or may not be appropriate. If the trailing junk
looked like this '100E' or '1000E-' (ie, forgot to type the
exponent), the incorrectly parsed values can be quite bad:
label = 32684
scalar = 6.93556e-310
Now:
- use the updated readLabel/readScalar routines that trigger a
FatalIOError on bad input:
--> FOAM FATAL IO ERROR:
Trailing content found parsing '1234xyz'
--> FOAM FATAL IO ERROR:
Trailing content found parsing '100E'
This traps erroneous command-line input immediately.
- Any trailing whitespace when parsing from strings or character buffers
is ignored rather than being treated as an error. This is consistent
with behaviour when reading from an Istream and with leading whitespace
being ignored in the underlying atof/atod, strtof/strtod... functions.
- Allow parsing directly from a std::string instead of just from a 'char*'.
This reflects the C++11 addition of std::stod to complement the C
functions strtod. This also makes it easier to parse string directly
without using an IStringStream.
- Two-parameter parsing methods return success/failure.
Eg,
if (readInt32(str, &int32Val)) ...
- One-parameter parsing methods return the value on success or
emit a FatalIOError.
Eg,
const char* buf;
int32Val = readInt32(buf, &);
- Improved consistency when parsing unsigned ints.
Use strtoimax and strtoumax throughout.
- Rename readDoubleScalar -> readDouble, readFloatScalar -> readFloat.
Using the primitive name directly instead of the Foam typedef for
better consistency with readInt32 etc.
- Clean/improve parseNasScalar.
Handle normal numbers directly, reduce some operations.
- previous only checked for clouds at the last instance and only
detected lagrangian fields from the first cloud.
Now check for clouds at all instances and detect all of their fields
as well.
- affects surfaceFieldValue, volFieldValue.
Use 'none' (if desired) to explicitly suppress the weightField, but
generally better to use a different operation.
There are a few issues:
- error would only throw exceptions if not parallel
- if we change this we also need to make sure the functionObjectList
construction is synchronised
- bounding box overlap was not returning the correct status so the code
to avoid the issue of 'badly formed bounding box' was not triggered.
- support VTP input in functionObjectCloud scene element
- additional fallback lookup of cloud information from state properties
instead of cloud OutputProperties
version on a switch. See #867
By default the code will use the same form as previous versions
To use the experimental version integrated from openfoam.org commit
da787200 set the info switch in the controlDict:
InfoSwitches
{
experimentalDdtCorr 1;
}
- when the iso-surface (eg, a cut plane, or distanceSurface) passes
exactly through the cell centre, zero-sized triangles can occur.
These should be merged away.
- link CGAL (clang version) without reference to mpfr,gmp libraries
- use offset address in printStack for Darwin as well
- alternative handling of feexcept on Darwin
- Reimplemented treatment of alpha1, phi and U in case of
nOuterCorrectors > 1 based on storePrevIter() to avoid cluttering the
solver with unnecessary fields in case of nOuterCorrectors = 1.
- Updated tutorial headers
- Added copyright note to isoAdvector src
- Removed outcommented code lines in interIsoFoam solver
- Removed all LTS from interIsoFoam since this is not currently supported
- Confirmed that discInConstantFlow gives identical results with N subCylces and time step N*dt
- Confirmed that this also holds when nOuterCorrectors > 1.
- start/end values were underrepresented due to rounding.
Now extend the range to include -0.5 and +0.5 beyond the usual
range to ensure the same number density.
Residual fields can be written using the new 'writeFields' entry, e.g.
functions
{
residual
{
type residuals;
libs ("libutilityFunctionObjects.so");
fields (".*");
writeControl writeTime;
writeFields true;
}
}
Fields currently correspond to the initial residual for the last solver
iteration.
-dry-run : perform check only and no writing
-dry-run-write: perform check and write to the next time step. This
also triggers function objects that fire on the call to write()
Improvements to existing functionality
--------------------------------------
- MPI is initialised without thread support if it is not needed e.g. uncollated
- Use native c++11 threading; avoids problem with static destruction order.
- etc/cellModels now only read if needed.
- etc/controlDict can now be read from the environment variable FOAM_CONTROLDICT
- Uniform files (e.g. '0/uniform/time') are now read only once on the master only
(with the masterUncollated or collated file handlers)
- collated format writes to 'processorsNNN' instead of 'processors'. The file
format is unchanged.
- Thread buffer and file buffer size are no longer limited to 2Gb.
The global controlDict file contains parameters for file handling. Under some
circumstances, e.g. running in parallel on a system without NFS, the user may
need to set some parameters, e.g. fileHandler, before the global controlDict
file is read from file. To support this, OpenFOAM now allows the global
controlDict to be read as a string set to the FOAM_CONTROLDICT environment
variable.
The FOAM_CONTROLDICT environment variable can be set to the content the global
controlDict file, e.g. from a sh/bash shell:
export FOAM_CONTROLDICT=$(foamDictionary $FOAM_ETC/controlDict)
FOAM_CONTROLDICT can then be passed to mpirun using the -x option, e.g.:
mpirun -np 2 -x FOAM_CONTROLDICT simpleFoam -parallel
Note that while this avoids the need for NFS to read the OpenFOAM configuration
the executable still needs to load shared libraries which must either be copied
locally or available via NFS or equivalent.
New: Multiple IO ranks
----------------------
The masterUncollated and collated fileHandlers can now use multiple ranks for
writing e.g.:
mpirun -np 6 simpleFoam -parallel -ioRanks '(0 3)'
In this example ranks 0 ('processor0') and 3 ('processor3') now handle all the
I/O. Rank 0 handles 0,1,2 and rank 3 handles 3,4,5. The set of IO ranks should always
include 0 as first element and be sorted in increasing order.
The collated fileHandler uses the directory naming processorsNNN_XXX-YYY where
NNN is the total number of processors and XXX and YYY are first and last
processor in the rank, e.g. in above example the directories would be
processors6_0-2
processors6_3-5
and each of the collated files in these contains data of the local ranks
only. The same naming also applies when e.g. running decomposePar:
decomposePar -fileHandler collated -ioRanks '(0 3)'
New: Distributed data
---------------------
The individual root directories can be placed on different hosts with different
paths if necessary. In the current framework it is necessary to specify the
root per slave process but this has been simplified with the option of specifying
the root per host with the -hostRoots command line option:
mpirun -np 6 simpleFoam -parallel -ioRanks '(0 3)' \
-hostRoots '("machineA" "/tmp/" "machineB" "/tmp")'
The hostRoots option is followed by a list of machine name + root directory, the
machine name can contain regular expressions.
New: hostCollated
-----------------
The new hostCollated fileHandler automatically sets the 'ioRanks' according to
the host name with the lowest rank e.g. to run simpleFoam on 6 processors with
ranks 0-2 on machineA and ranks 3-5 on machineB with the machines specified in
the hostfile:
mpirun -np 6 --hostfile hostfile simpleFoam -parallel -fileHandler hostCollated
This is equivalent to
mpirun -np 6 --hostfile hostfile simpleFoam -parallel -fileHandler collated -ioRanks '(0 3)'
This example will write directories:
processors6_0-2/
processors6_3-5/
A typical example would use distributed data e.g. no two nodes, machineA and
machineB, each with three processes:
decomposePar -fileHandler collated -case cavity
# Copy case (constant/*, system/*, processors6/) to master:
rsync -a cavity machineA:/tmp/
# Create root on slave:
ssh machineB mkdir -p /tmp/cavity
# Run
mpirun --hostfile hostfile icoFoam \
-case /tmp/cavity -parallel -fileHandler hostCollated \
-hostRoots '("machineA" "/tmp" "machineB" "/tmp")'
Contributed by Mattijs Janssens
Specialized variants of the power law porosity and k epsilon turbulence models
developed to simulate atmospheric flow over forested and non-forested complex
terrain.
Class
Foam::powerLawLopesdaCosta
Description
Variant of the power law porosity model with spatially varying
drag coefficient
given by:
\f[
S = -\rho C_d \Sigma |U|^{(C_1 - 1)} U
\f]
where
\vartable
\Sigma | Porosity surface area per unit volume
C_d | Model linear coefficient
C_1 | Model exponent coefficient
\endvartable
Reference:
\verbatim
Costa, J. C. P. L. D. (2007).
Atmospheric flow over forested and non-forested complex terrain.
\endverbatim
Class
Foam::RASModels::kEpsilonLopesdaCosta
Description
Variant of the standard k-epsilon turbulence model with additional source
terms to handle the changes in turbulence in porous regions represented by
the powerLawLopesdaCosta porosity model.
Reference:
\verbatim
Costa, J. C. P. L. D. (2007).
Atmospheric flow over forested and non-forested complex terrain.
\endverbatim
The default model coefficients are
\verbatim
kEpsilonLopesdaCostaCoeffs
{
Cmu 0.09;
C1 1.44;
C2 1.92;
sigmak 1.0;
sigmaEps 1.3;
}
\endverbatim
Tutorial case to follow.
Minmod is the default limiter function and specified with an explicit name e.g.:
gradSchemes
{
default Gauss linear;
limited cellLimited Gauss linear 1;
}
Venkatakrishnan and cubic limiter functions are also provided and may be
specified explicitly e.g.:
gradSchemes
{
default Gauss linear;
limited cellLimited<Venkatakrishnan> Gauss linear 1;
}
or
gradSchemes
{
default Gauss linear;
limited cellLimited<cubic> 1.5 Gauss linear 1;
}
The standard minmod function is recommended for most applications but if
convergence or stability problems arise it may be beneficial to use one of the
alternatives which smooth the gradient limiting. The Venkatakrishnan is not
well formulated and allows the limiter to exceed 1 whereas the cubic limiter is
designed to obey all the value and gradient constraints on the limiter function,
see
Michalak, K., & Ollivier-Gooch, C. (2008).
Limiters for unstructured higher-order accurate solutions
of the Euler equations.
In 46th AIAA Aerospace Sciences Meeting and Exhibit (p. 776).
The cubic limiter function requires the transition point at which the limiter
function reaches 1 is an input parameter which should be set to a value between
1 and 2 although values larger than 2 are physical but likely to significantly
reduce the accuracy of the scheme.
VenkatakrishnanGradientLimiter: Updated documentation
cubicGradientLimiter: Documented private data
The tutorial demonstrates generation of a C-grid mesh using blockMesh
The geometry is provided by a surface mesh (OBJ file) of the NACA0012 aerofoil
The case is setup with a freestream flow speed of Ma=0.72
Thanks to Kai Bastos at Duke University for the geometry and helpful input.
Description
This boundary condition extrapolates field to the patch using the near-cell
values and adjusts the distribution to match the specified, optionally
time-varying, mean value. This extrapolated field is applied as a
fixedValue for outflow faces but zeroGradient is applied to inflow faces.
This boundary condition can be applied to pressure when inletOutlet is
applied to the velocity so that a zeroGradient condition is applied to the
pressure at inflow faces where the velocity is specified to avoid an
unphysical over-specification of the set of boundary conditions.
Usage
\table
Property | Description | Required | Default value
meanValue | mean value Function1 | yes |
phi | Flux field name | no | phi
\endtable
Example of the boundary condition specification:
\verbatim
<patchName>
{
type fixedMeanOutletInlet;
meanValue 1.0;
}
\endverbatim
See also
Foam::fixedMeanFvPatchField
Foam::outletInletFvPatchField
Foam::Function1Types
These BCs blend between typical inflow and outflow conditions based on the
velocity orientation.
airFoil2D tutorial updated to demonstrate these new BCs.
In constant/chemistryProperties in addition to the specification of the initial
ODE integration time-step used at the start of the run:
initialChemicalTimeStep 1e-12;
this time step may now also be specified for every chemistry integration by
setting the optional entry maxChemicalTimeStep, e.g.
maxChemicalTimeStep 1e-12;
The number of characters needed to print a double in scientific format
is 8 plus the number of decimal places; e.g., -6.453452e-231 (6 decimal
places, 14 characters). This has been set in writeFile.C, replacing a
value of 7. Presumably, the case of three digits in the exponent was not
considered when this was first implemented. This change ensures at least
one character of whitespace between tabulated numbers.
This resolves bug report https://bugs.openfoam.org/view.php?id=2801
chtMultiRegionFoam now supports reaction/combustion modelling in fluid
regions in the same way as reactingFoam.
TUT: chtMultiRegionFoam: Added reverseBurner tutorial
This tutorial demonstrates chtMultiRegionFoam's combustion capability
Thermo and reaction thermo macros have been renamed and refactored. If
the name is plural (make???Thermos) then it adds the model to all
selection tables. If not (make???Thermo) then it only adds to the
requested psi or rho table.
This mixture allows a reacting solver to be used with a single component
fluid without the additional case files usually required for reacting
thermodynamics.
reactionThermo: Instantiated more single component mixtures
ENH: reactionThermo: Select singleComponentMixture as pureMixture
A pureMixture can now be specified in a reacting solver. This further
enhances compatibility between non-reacting and reacting solvers.
To achieve this, mixtures now have a typeName function of the same form
as the lower thermodyanmic models. In addition, to avoid name clashes,
the reacting thermo make macros have been split into those that create
entries on multiple selection tables, and those that just add to the
reaction thermo table.
This function object will write a paraview-viewable field showing the
area-density of parcel collisions on every patch face. It also outputs
the rate of collisions hitting each patch face, calculated over an
interval equal to the time elapsed since the last output. It has an
optional entry to specify a minimum incident speed below which a
collision is not counted.
It can be enabled in the cloud properties file as follows:
cloudFunctions
{
patchCollisionDensity1
{
type patchCollisionDensity;
minSpeed 1e-3; // (optional)
}
}
This work was supported by Anton Kidess, at Hilti
The combustion and chemistry models no longer select and own the
thermodynamic model; they hold a reference instead. The construction of
the combustion and chemistry models has been changed to require a
reference to the thermodyanmics, rather than the mesh and a phase name.
At the solver-level the thermo, turbulence and combustion models are now
selected in sequence. The cyclic dependency between the three models has
been resolved, and the raw-pointer based post-construction step for the
combustion model has been removed.
The old solver-level construction sequence (typically in createFields.H)
was as follows:
autoPtr<combustionModels::psiCombustionModel> combustion
(
combustionModels::psiCombustionModel::New(mesh)
);
psiReactionThermo& thermo = combustion->thermo();
// Create rho, U, phi, etc...
autoPtr<compressible::turbulenceModel> turbulence
(
compressible::turbulenceModel::New(rho, U, phi, thermo)
);
combustion->setTurbulence(*turbulence);
The new sequence is:
autoPtr<psiReactionThermo> thermo(psiReactionThermo::New(mesh));
// Create rho, U, phi, etc...
autoPtr<compressible::turbulenceModel> turbulence
(
compressible::turbulenceModel::New(rho, U, phi, *thermo)
);
autoPtr<combustionModels::psiCombustionModel> combustion
(
combustionModels::psiCombustionModel::New(*thermo, *turbulence)
);
ENH: combustionModel, chemistryModel: Simplified model selection
The combustion and chemistry model selection has been simplified so
that the user does not have to specify the form of the thermodynamics.
Examples of new combustion and chemistry entries are as follows:
In constant/combustionProperties:
combustionModel PaSR;
combustionModel FSD;
In constant/chemistryProperties:
chemistryType
{
solver ode;
method TDAC;
}
All the angle bracket parts of the model names (e.g.,
<psiThermoCombustion,gasHThermoPhysics>) have been removed as well as
the chemistryThermo entry.
The changes are mostly backward compatible. Only support for the
angle bracket form of chemistry solver names has been removed. Warnings
will print if some of the old entries are used, as the parts relating to
thermodynamics are now ignored.
ENH: combustionModel, chemistryModel: Simplified model selection
Updated all tutorials to the new format
STYLE: combustionModel: Namespace changes
Wrapped combustion model make macros in the Foam namespace and removed
combustion model namespace from the base classes. This fixes a namespace
specialisation bug in gcc 4.8. It is also somewhat less verbose in the
solvers.
This resolves bug report https://bugs.openfoam.org/view.php?id=2787
ENH: combustionModels: Default to the "none" model
When the constant/combustionProperties dictionary is missing, the solver
will now default to the "none" model. This is consistent with how
radiation models are selected.
and replaced multiphaseInterDyMFoam with a script which reports this change.
The multiphaseInterDyMFoam tutorials have been moved into the multiphaseInterFoam directory.
This change is one of a set of developments to merge dynamic mesh functionality
into the standard solvers to improve consistency, usability, flexibility and
maintainability of these solvers.
Henry G. Weller
CFD Direct Ltd.
and replaced interDyMFoam with a script which reports this change.
The interDyMFoam tutorials have been moved into the interFoam directory.
This change is one of a set of developments to merge dynamic mesh functionality
into the standard solvers to improve consistency, usability, flexibility and
maintainability of these solvers.
Henry G. Weller
CFD Direct Ltd.
interMixingFoam, multiphaseInterFoam: Updated for changes to interFoam
and replaced rhoPimpleDyMFoam with a script which reports this change.
The rhoPimpleDyMFoam tutorials have been moved into the rhoPimpleFoam directory.
This change is the first of a set of developments to merge dynamic mesh
functionality into the standard solvers to improve consistency, usability,
flexibility and maintainability of these solvers.
Henry G. Weller
CFD Direct Ltd.
rhoReactingFoam: Updated for changes to rhoPimpleFoam files
Now pimpleDyMFoam is exactly equivalent to pimpleFoam when running on a
staticFvMesh. Also when the constant/dynamicMeshDict is not present a
staticFvMesh is automatically constructed so that the pimpleDyMFoam solver can
run any pimpleFoam case without change.
pimpleDyMFoam: Store Uf as an autoPtr for better error handling
pimpleFoam: Set initial deltaT from the Courant number
for improved stability on start-up and compatibility with pimpleDyMFoam
ENH: pimpleFoam: Merged dynamic mesh functionality of pimpleDyMFoam into pimpleFoam
and replaced pimpleDyMFoam with a script which reports this change.
The pimpleDyMFoam tutorials have been moved into the pimpleFoam directory.
This change is the first of a set of developments to merge dynamic mesh
functionality into the standard solvers to improve consistency, usability,
flexibility and maintainability of these solvers.
Henry G. Weller
CFD Direct Ltd.
tutorials/incompressible/pimpleFoam: Updated pimpleDyMFoam tutorials to run pimpleFoam
Renamed tutorials/incompressible/pimpleFoam/RAS/wingMotion/wingMotion2D_pimpleDyMFoam
-> tutorials/incompressible/pimpleFoam/RAS/wingMotion/wingMotion2D_pimpleFoam
XiEngineFoam is a premixed/partially-premixed combustion engine solver which
exclusively uses the Xi flamelet combustion model.
engineFoam is a general engine solver for inhomogeneous combustion with or
without spray supporting run-time selection of the chemistry-based combustion
model.
Standard crank-connecting rod and the new free-piston kinematics motion options
are provides, others can easily be added.
Contributed by Francesco Contino and Nicolas Bourgeois, BURN Research Group.
The patch magSf calculation has been changed so that it uses the same
triangulation as the overlap algorithm. This improves consistency and
means that for exactly conforming patches (typically before any mesh
motion) the weights do not require normalisation.
Resolves bug-report https://bugs.openfoam.org/view.php?id=2785
ENH: compressibleInterFoam family: merged two-phase momentum stress modelling from compressibleInterPhaseTransportFoam
The new momentum stress model selector class
compressibleInterPhaseTransportModel is now used to select between the options:
Description
Transport model selection class for the compressibleInterFoam family of
solvers.
By default the standard mixture transport modelling approach is used in
which a single momentum stress model (laminar, non-Newtonian, LES or RAS) is
constructed for the mixture. However if the \c simulationType in
constant/turbulenceProperties is set to \c twoPhaseTransport the alternative
Euler-Euler two-phase transport modelling approach is used in which separate
stress models (laminar, non-Newtonian, LES or RAS) are instantiated for each
of the two phases allowing for different modeling for the phases.
Mixture and two-phase momentum stress modelling is now supported in
compressibleInterFoam, compressibleInterDyMFoam and compressibleInterFilmFoam.
The prototype compressibleInterPhaseTransportFoam solver is no longer needed and
has been removed.
Another exception has been added to globalIndexAndTransform to prevent
transformations being generated from coupled patch pairs marked with
coincident-full-match transformations. Foamy generates such patches, and
the faces on them at intermediate stages of meshing can be degenerate,
making the calculation of transformations unreliable. This change
enforces the definition that coincident-full-match patch pairs are not
transformed.
To unsure fvOptions are instantiated for post-processing createFvOptions.H must
be included in createFields.H rather than in the solver directly.
Resolves bug-report https://bugs.openfoam.org/view.php?id=2733
BUG: porousSimpleFoam: moved createFvOptions.H into createFields.H for -postProcess option
Resolves bug-report https://bugs.openfoam.org/view.php?id=2733
BUG: solvers: Moved fvOption construction into createFields.H for post-processing
This ensures that the fvOptions are constructed for the -postProcessing option
so that functionObjects which process fvOption data operate correctly in this
mode.
- actually prevent this type of thing:
Switch sw;
sw = "none";
without relinquishing automatic conversion to/from bool.
Nonetheless, make construct from string explicit.
- Added some minor optimization for the lookup of the switch names.
- can be useful either for flow-rate weighting where backflow
is to be ignored in the average, or for flow-rate weighting
on surfaces with inconsistent orientation.
Reworked to code to make better use of Enum (the NamedEnum
replacement). Enum doesn't require contiguous enumeration values,
which lets us use bitmasking of similar operations to reduce
duplicate code.
- the tokenType was being send via write(char), which includes
isspace filtering. If the tokenType enumeration coincides
with a whitespace character, it would be suppressed.
Now add character directly to the buffer.
STYLE: some additional minor private methods to help refactoring
- readStringFromBuffer, writeStringToBuffer for common string
operation.
When specifying the averaging data, a new `windowType` option is
available, taking the values:
- none: no windowing
- approximate: past functionality (v1706 and earlier)
- exact: exact moving average - will store and write (for restart) all
fields in the window
- the zero::null and one::null sub-classes add an additional null
output adapter.
The function of the nil class (special-purpose class only used for
HashSet) is now taken by zero::null.
- add -compiler=NAME option to remove a build or platforms directory
corresponding to any specified compiler on the current arch.
- when -compiler or -compiler=NAME is specified, also clean related
sub-directories as well. This will cleanup mpi-related directory.
- consistent with C++ STL conventions, the reverse iterators should
use operator++ to transit the list from rbegin() to rend().
The previous implementation used raw pointers, which meant that they
had the opposite behaviour: operator-- to transit from rbegin() to
rend().
The updated version only has operator++ defined, thus the compiler
should catch any possible instances where people were using the old
(incorrect) versions.
- updated forAllReverseIters() and forAllConstReverseIters() macros to
be consistent with new implementation and with C++ STL conventions.
- this increases the flexibility of the interface
- Add stringOps 'natural' string sorting comparison.
Digits are sorted in their natural order, which means that
(file10.txt file05.txt file2.txt)
are sorted as
(file2.txt file05.txt file10.txt)
STYLE: consistent naming of template parameters for comparators
- Compare for normal binary predicates
- ListComparePredicate for list compare binary predicates
- similar to word::validate to allow stripping of invalid characters
without triggering a FatalError.
- use this validated fileName in Foam::readDir to avoid problems when
a directory contains files with invalid characters in their names
- adjust rmDir to handle filenames with invalid characters
- fileName::equals() static method to compare strings while ignoring
any differences that are solely due to duplicate slashes
- more consistent naming:
* Versions that hold and manage their own memory:
IListStream, OListStream
* Versions that reference a fixed size external memory:
UIListStream, UOListStream
- use List storage instead of DynamicList within OListStream.
Avoids duplicate bookkeeping, more direct handling of resizing.
- The problem occurs when using atof to parse values such as "1e-39"
since this is out of range for a float and _can_ set errno to
ERANGE.
Similar to parsing of integers, now parse with the longest floating
point representation "long double" via strtold (guaranteed to be
part of C++11) and verify against the respective VGREAT values for
overflow. Treat anything smaller than VSMALL to be zero.
- makes it accessible for containers that manage their own storage
and derive directly from UList.
- DynamicList::min_size() method to access the corresponding
SizeMin template parameter.
- ensure consistency in the reserve size for the constructor
DynamicList<..> lst(N);
now has identical sizing as
DynamicList<..> lst();
reserve(N);
- Arrhenius viscocity model for incompressible viscocity.
- energyTransport FO for incompressible single and multiple phase
flows and viscousDissipation fvOption source.
- Tutorial to show the use of energyTransport:
multiphase/multiphaseInterFoam/laminar/mixerVessel2D
- Tutorial to show viscousDissipation:
compressible/rhoPimpleFoam/RAS/TJunction
- reduce coding clutter, avoiding allocated pointers when possible.
IFstream and OFstream continue to use pointers since they handle
compressed files, other streams can do without them.
- these provide a similar functionality to string-streams, but operate
on a externally provided memory buffer which can be used to reduce
the amount of copying.
- classes were previously staged as part of the ADIOS community
repository.
- for convenience and symmetry with OStringStream
STYLE: void return value for stream rewind() methods
- this makes it easier to design bidirectional streams
- low-level beginRaw(), writeRaw(), endRaw() methods.
These can be used to directly add '()' decorators for serial output
or prepare/cleanup parallel buffers.
Used, for example, when outputting indirect lists in binary to avoid.
- used in various places to test if the input can be parsed as a
label/scalar, so warnings tend to flood the output.
- be more explicit when encountering range errors
- avoid meshModifier contents from being read immediately upon
construction, since this recreates an existing modifier instead of
allowing us to specify our own.
- improve functional compatibility with DynList (remove methods)
* eg, remove an element from any position in a DynamicList
* reduce the number of template parameters
* remove/subset regions of DynamicList
- propagate Swap template specializations for lists, hashtables
- move construct/assignment to various containers.
- add find/found methods for FixedList and UList for a more succinct
(and clearer?) usage than the equivalent global findIndex() function.
- simplify List_FOR_ALL loops
- this reduces the number of functions and allows lazy loading of
completion options, which makes it easy to quickly add any other
OpenFOAM application in completion.
The generic '_of_complete_' function handles (bash) completion for
any OpenFOAM application. On the first call for any particular
application, it retrieves the available options from the application
help output and adds this information to its environmental cache for
subsequent use.
- Tcsh completion uses the same function via a bash wrapper.
But since its wrapper is transient, the on-the-fly generation would
be less efficient. For this case, a pre-generated completion_cache
can be used, which is generated with
bin/tools/foamCreateCompletionCache
- handles the case where we are currently completing something that
does not appear to be an option. For example,
foamDictionary -expanded someD[TAB]
should complete the filename, not present more options.
- The logic for switching input-mode was previously completely
encapsulated within the #inputMode directive, but without any
programming equivalent. Furthermore, the encapsulation in inputMode
made the logic less clear in other places.
Exposing the inputMode as an enum with direct access from entry
simplifies things a fair bit.
- eliminate one level of else/if nesting in entryIO.C for clearer logic
- for dictionary function entries, simply use
addNamedToMemberFunctionSelectionTable() and avoid defining a type()
as a static. For most function entries the information is only used
to get a name for the selection table lookup anyhow.
- although this has been supported for many years, the tutorials
continued to use "convertToMeters" entry, which is specific to blockMesh.
The "scale" is more consistent with other dictionaries.
ENH:
- ignore "scale 0;" (treat as no scaling) for blockMeshDict,
consistent with use elsewhere.
- currently no cleanup of completions when deactivating an OpenFOAM
tcsh environment
- tab completion with directories adds a space after the slash, which
makes navigation a bit annoying.
- useful operations for other string representations of fileName types.
The return type is in general a std::string with any narrowing
being done by the caller on the return value.
- consolidate word::validated() into word::validate() and also allow
as short form for string::validate<word>(). Also less confusing than
having similarly named methods that essentially do the same thing.
- more consistent const access when iterating over strings
- add valid(char) for keyType and wordRe
- use complete -o filenames, dropped -o nospace to make it more responsive.
- restructure completion code to use a unified backend, which makes it easier
understand, maintain and re-use.
- foamCreateBashCompletions now simply outputs to a stdout, and allows
quick generation of completion of single applications.
- add -fileHandler completion in anticipation of future changes there.
- relocated as etc/config.s/bash_completion to prevent inadvertently
having two versions (.com, .org) installed at the same time.
- Instead of relying on #inputMode to effect a global change it is now
possible (and recommended) to a temporary change in the inputMode
for the following entry.
#default : provide default value if entry is not already defined
#overwrite : silently remove a previously existing entry
#warn : warn about duplicate entries
#error : error if any duplicate entries occur
#merge : merge sub-dictionaries when possible (the default mode)
This is generally less cumbersome than the switching the global
inputMode. For example to provide a set of fallback values.
#includeIfPresent "user-files"
...
#default value uniform 10;
vs.
#includeIfPresent "user-files"
#inputMode protect
...
value uniform 10;
#inputMode merge // _Assuming_ we actually had this before
These directives can also be used to suppress the normal dictionary
merge semantics:
#overwrite dict { entry val; ... }
- With special-purpose templating it is possible to have file contents
that almost look like an OpenFOAM file, but which are not.
The contents do not need to be deliberately tricky, even the simplest
README:
FoamFile is the first word parsed in OpenFOAM files
will trigger problems.
We now trap any IOerror on these and reject this type of file as invalid.
- error::throwExceptions(bool) returning the previous state makes it
easier to set and restore states.
- throwing() method to query the current handling (if required).
- the normal error::throwExceptions() and error::dontThrowExceptions()
also return the previous state, to make it easier to restore later.
- installed under /usr/include/scotch/scotch.h
ENH: obtain fallback value for SCOTCH_VERSION from the header
COMP: add support for metis, scotch static libraries (eg, EasyBuild)
- patterns only supported for the final element.
To create an element as a pattern instead of a word, an embedded
string quote (single or double) is used for that element.
Any of the following examples:
"/top/sub/dict/'(p|U).*" 100;
"/top/sub/dict/'(p|U).*'" 100;
"/top/sub/dict/\"(p|U).*" 100;
"/top/sub/dict/\"(p|U).*\"" 100;
are equivalent to the longer form:
top
{
sub
{
dict
{
"(p|U).*" 100;
}
}
}
It is not currently possible to auto-vivify intermediate
dictionaries with patterns.
NOK "/nonexistent.*/value" 100;
OK "/existing.*/value" 100;
- full scoping also works for the #remove directive
#remove "/dict1/subdict2/entry1"
- Resolve ambiguity by using the following rules:
1) starts with '/' => absolute file-system path
2) starts with './' or '../' => file-system path relative to CWD
3) otherwise treat as relative to the case
STYLE: allow write access to headerClassName
- resets the output buffer completely - implementing what rewind was
likely meant to have accomplished for many use cases.
STYLE: OSHA1stream reset() for symmetry. Deprecate rewind().
- use allocator class to wrap the stream pointers instead of passing
them into ISstream, OSstream and using a dynamic cast to delete
then. This is especially important if we will have a bidirectional
stream (can't delete twice!).
STYLE:
- file stream constructors with std::string (C++11)
- for rewind, explicit about in|out direction. This is not currently
important, but avoids surprises with any future bidirectional access.
- combined string streams in StringStream.H header.
Similar to <sstream> include that has both input and output string
streams.
The 4.x tracking enforces reduced dimensionality on the parcels by
moving them to the centre of the mesh at the start of each track,
without considering the topology. This can leave the parcel outside it's
associated tetrahedron.
The barycentric algorithm isn't tolerant to incorrect topology, so
instead of changing position, it was written to track to the mesh
centre. This worked, but effectively doubled the number of tracking
calls. This additional cost has now been removed by absorbing the
constraint displacement into the existing motion track, so that the same
number of tracking steps are performed as before.
Partially resolves bug report https://bugs.openfoam.org/view.php?id=2688
Note: performs its own tracking and does not rely on the base
particle::trackXXX functions, and uses a local particle position.
Look to update to barycentric tracking in the future.
old "positions" file form
The change to barycentric-based tracking changed the contents of the
cloud "positions" file to a new format comprising the barycentric
co-ordinates and other cell position-based info. This broke
backwards compatibility, providing no option to restart old cases
(v1706 and earlier), and caused difficulties for dependent code, e.g.
for post-processing utilities that could only infer the contents only
after reading.
The barycentric position info is now written to a file called
"coordinates" with provision to restart old cases for which only the
"positions" file is available. Related utilities, e.g. for parallel
running and data conversion have been updated to be able to support both
file types.
To write the "positions" file by default, use set the following option
in the InfoSwitches section of the controlDict:
writeLagrangianPositions 1;
The splash kinetic energy has been changed to depend upon the velocity
of the parcel normal to the wall, rather than the absolute velocity, in
accordance with the original reference.
This patch was contributed by Stefan Hildenbrand at Pfinder
Resolves bug report https://bugs.openfoam.org/view.php?id=2682
Interpolated continuous phase data is only needed during a track and
therefore shouldn't be stored on the parcel. The continuous velocity,
density and viscosity have been moved from the kinematic parcel to the
kinematic parcel tracking data. This reduces the memory usage of the
kinematic layer by about one third. The thermo and reacting layers still
require the same treatment.
A lot of methods were taking argument data which could be referenced or
generated from the parcel class at little or no additional cost. This
was confusing and generated the possibility of inconsistent data states.
Tracking data classes are no longer templated on the derived cloud type.
The advantage of this is that they can now be passed to sub models. This
should allow continuous phase data to be removed from the parcel
classes. The disadvantage is that every function which once took a
templated TrackData argument now needs an additional TrackCloudType
argument in order to perform the necessary down-casting.
The combined solver includes the most advanced and general functionality from
each solver including:
Continuous phase
Lagrangian multiphase parcels
Optional film
Continuous and Lagrangian phase reactions
Radiation
Strong buoyancy force support by solving for p_rgh
The reactingParcelFoam and reactingParcelFilmFoam tutorials have been combined
and updated.
The absolute value of the the time has been added to the rigid body
model state. This value is not directly necessary for calculating the
evolution of the rigid body system, it just facilitates the
implementation of sub-models which are in some way time-dependent.
Mixture molecular weight is now evaluated in heThermo like everything
else, relying on the low level specie mixing rules. Units have also been
corrected.
SpecieMixture: Pure virtual definition for W to prevent Clang warning
to support the evaporation of the solvent from the wax film and the changes in
viscosity caused by the reduction in solvent content.
BUG: filmViscosityModel::thixotropicViscosity: Corrected sign of impingement rate
to compensate for rhoSp having the wrong sign
BUG: surfaceFilmModels::waxSolventEvaporation: Corrected handling of impingement
ENH: surfaceFilmModels::waxSolventViscosity: Changed mixing to mole-fraction based
ENH: surfaceFilmModels::thermoSingleLayer: Added call to solveContinuity before updateSubmodels
to allow sub-models to solve transport equations for conserved properties
In the event that matching centroids across a coupled patch pair fails,
we fall back to matching the face point average. The latter can be
obtained more reliably on degenerate faces as the calculation does not
involve division by the face area.
This fallback was already implemented as part of processorPolyPatch.
This change also applies it to the faceCoupleInfo class used by
reconstructParMesh.
In this version of compressibleInterFoam separate stress models (laminar,
non-Newtonian, LES or RAS) are instantiated for each of the two phases allowing
for completely different modeling for the phases.
e.g. in the climbingRod tutorial case provided a Newtonian laminar model is
instantiated for the air and a Maxwell non-Newtonian model is instantiated for
the viscoelastic liquid. To stabilize the Maxwell model in regions where the
liquid phase-fraction is 0 the new symmTensorPhaseLimitStabilization fvOption is
applied.
Other phase stress modeling combinations are also possible, e.g. the air may be
turbulent but the liquid laminar and an RAS or LES model applied to the air
only. However, to stabilize this combination a suitable fvOption would need to
be applied to the turbulence properties where the air phase-fraction is 0.
Henry G. Weller, Chris Greenshields
CFD Direct Ltd.
The restraints generate either joint-local (tau) or global (fx) forces.
At the moment they all generate the latter. This change corrects three
of the four restraints so that the forces are in the gobal coordinate
system and not the local coordinate system of the body.
The problem with this is that the forward dynamics code then transforms
most of the forces back to the body local coordinate system. A better
solution would be to associate restraints which are more sensibly
defined in a local frame with the joints instead of the bodies, and
return the forces as part of the tau variable.
Two boundary conditions for the modelling of semi-permeable baffles have
been added. These baffles are permeable to a number of species within
the flow, and are impermeable to others. The flux of a given species is
calculated as a constant multipled by the drop in mass fraction across
the baffle.
The species mass-fraction condition requires the transfer constant and
the name of the patch on the other side of the baffle:
boundaryField
{
// ...
membraneA
{
type semiPermeableBaffleMassFraction;
samplePatch membranePipe;
c 0.1;
value uniform 0;
}
membraneB
{
type semiPermeableBaffleMassFraction;
samplePatch membraneSleeve;
c 0.1;
value uniform 1;
}
}
If the value of c is omitted, or set to zero, then the patch is
considered impermeable to the species in question. The samplePatch entry
can also be omitted in this case.
The velocity condition does not require any special input:
boundaryField
{
// ...
membraneA
{
type semiPermeableBaffleVelocity;
value uniform (0 0 0);
}
membraneB
{
type semiPermeableBaffleVelocity;
value uniform (0 0 0);
}
}
These two boundary conditions must be used in conjunction, and the
mass-fraction condition must be applied to all species in the
simulation. The calculation will fail with an error message if either is
used in isolation.
A tutorial, combustion/reactingFoam/RAS/membrane, has been added which
demonstrates this transfer process.
This work was done with support from Stefan Lipp, at BASF.
To disable face correspondence checking set
checkFaceCorrespondence off;
in blockMeshDict. This is necessary in the rare cases where adjacent block
faces do not need to correspond because they are geometrically collapsed,
e.g. to form a pole/axis.
Resolves bug-report https://bugs.openfoam.org/view.php?id=2711
ENH: foamyHexMesh: Made default region volume type that of it's parent
Foamy surface conformation entries have a "meshableSide" entry which
controls which side of the surface is to be meshed. Typically this is
set "inside" for boundaries and "both" for baffles. A sub-region's
default entry is now taken from it's parent, rather than a specific
value (it was "inside"). This is consistent with how other entries are
handled.
surfaceConformation
{
locationInMesh (0 0 0);
geometryToConformTo
{
baffle
{
featureMethod extractFeatures;
includedAngle 120;
meshableSide both; // <-- per-surface setting
regions
{
disk
{
meshableSide both; // <-- per-region setting*
// *in this example, this entry is not needed, as it
// is taken from the per-surface setting above
}
}
}
// ...
}
}
ENH: foamyHexMesh: Added (reinstated) baffle patches
A patch can now be assigned to a baffle surface. This assignment will
take precedence over any face-zones.
surfaceConformation
{
locationInMesh (0 0 0);
geometryToConformTo
{
disk
{
featureMethod extractFeatures;
includedAngle 120;
meshableSide both; // <-- baffle
patchInfo
{
type wall;
inGroups (walls);
}
}
// ...
}
}
STYLE: foamyHexMesh: Switched off output of all the secondary meshes
The integration of force and heat transfer onto the particle is
facilitated by a run-time-selectable integration scheme. These schemes
were written to generate the value at the end of an intregration step
and also an average value over the step from which the total transfer
was computed.
The average value in the Euler scheme was implemented incorrectly, which
resulted in the momentum and heat transfer processes being
non-conservative. Implementing the average correctly, however, would
have inteoduced a number of trancendental functions which would have
negated the purpose of the Euler scheme as the cheap and stable option.
The schemes have been rewritten to generate changes over the step,
rather than the final value. This change is then used to calculate the
transfers. Regardless of the scheme, this formulation is guaranteed to
be conservative, and the Euler scheme remains computationally
inexpensive.
This change was made with help from Timo Niemi, VTT
This resolves bug report https://bugs.openfoam.org/view.php?id=2666
ENH: integrationSchemes: Further simplification and optimisation
Removed templating from integration schemes, improved the name
convention, and optimised the utilisation so that the virtual call is
only made once per integration in the KinematicParcel and the
ThermoParcel.
BUG: integrationSchemes: Corrections to coupled/non-coupled force splitting
The integration splitting implemented in commit a5806207 has been shown
to be incorrect in some cases. A new procedure has been implemented
which can correctly split the implicit-explicit integral into a number
of pieces, in order to calculate the contribution of each. This is
intended for integrating coupled and non-coupled particle momentum and
heat transfers.
However, currently there is only ever one implicit coefficient used in
these transfers (there is no implicit non-coupled contribution). The
evaluation has therefore been short-cutted to only do the integration
with respect to the coupled contributions. The splitting functionality
has been retained in case additional separate implicit coefficients are
required in the future.
This change was made with help from Timo Niemi, VTT
This resolves bug report https://bugs.openfoam.org/view.php?id=2666
XiEngineFoam is a premixed/partially-premixed combustion engine solver which
exclusively uses the Xi flamelet combustion model.
engineFoam is a general engine solver for inhomogeneous combustion with or
without spray supporting run-time selection of the chemistry-based combustion
model.
Standard crank-connecting rod and the new free-piston kinematics motion options
are provides, others can easily be added.
Contributed by Francesco Contino and Nicolas Bourgeois, BURN Research Group.
- added an explicit print, but only report profiling to the log
file from master process.
We don't wish to overwrite any profiling that was conducted during
the simulation. Besides which, we don't have a proper Time object
for handling the write nicely either.
- add note in BuildIssues about the I_MPI_CC variable, which is needed
when building with Intel-MPI and gcc/clang.
This additional setting is needed since the changes needed to solve
the issue of building scotch with Intel-MPI and icc (issue #434)
means that mpiicc is now being used as the wrapper when compiling
scotch.
- have the FOAM_MPI short name for INTELMPI start with 'impi-' instead
of just the version number.
Intel-MPI is often installed as /opt/intel/impi/4.1.3.049, which
results in 'FOAM_MPI=4.1.3.049' and the mpi flavour is lost.
Prefix these cases with 'impi-'
- csearch(), search(), csearchScoped(), searchScoped() methods
can be used to find an entry and also retain the enclosing
dictionary context.
- To avoid ambiguity between a dot (.) as a scoping character and
legal part of a keyword, entries can now be accessed directly using
slash-scoping semantics similar to file-names:
* cfindScopedDictPtr, findScopedDictPtr
- To get or create a sub-dictionary entry:
* makeScopedDictPtr, which behaves similarly to mkdirp in that it
will create any intermediate dictionaries as required.
- allows configuration without an environment variable.
For compatibility still respect FOAM_SIGFPE and FOAM_SETNAN
env-variables
- The env-variables are now treated as true/false switch values.
Previously there was just a check for env exists or not, but this
can be fairly fragile for a user's environment.
for consistency with reactingTwoPhaseEulerFoam and to ensure correct operation
of models requiring formal boundedness of phase-fractions.
Resolves bug-report https://bugs.openfoam.org/view.php?id=2589
Temporal variation of Ta is generally more useful than spatial variation but
a run-time switch between the two modes of operation could be implemented in
needed.
"pos" now returns 1 if the argument is greater than 0, otherwise it returns 0.
This is consistent with the common mathematical definition of the "pos" function:
https://en.wikipedia.org/wiki/Sign_(mathematics)
However the previous implementation in which 1 was also returned for a 0
argument is useful in many situations so the "pos0" has been added which returns
1 if the argument is greater or equal to 0. Additionally the "neg0" has been
added which returns 1 if if the argument is less than or equal to 0.
Now the "localEuler" ddt scheme does not apply any corrections due to
mesh-motion; the old-time volumes are not used and the mesh-motion flux is set
to zero. A consequence of these changes is that boundedness of transported
scalars is ensured but mesh-motion causes a conservation error which will
reduces to zero as steady-state is approached and the mesh becomes stationary.
Original commit message:
------------------------
Parallel IO: New collated file format
When an OpenFOAM simulation runs in parallel, the data for decomposed fields and
mesh(es) has historically been stored in multiple files within separate
directories for each processor. Processor directories are named 'processorN',
where N is the processor number.
This commit introduces an alternative "collated" file format where the data for
each decomposed field (and mesh) is collated into a single file, which is
written and read on the master processor. The files are stored in a single
directory named 'processors'.
The new format produces significantly fewer files - one per field, instead of N
per field. For large parallel cases, this avoids the restriction on the number
of open files imposed by the operating system limits.
The file writing can be threaded allowing the simulation to continue running
while the data is being written to file. NFS (Network File System) is not
needed when using the the collated format and additionally, there is an option
to run without NFS with the original uncollated approach, known as
"masterUncollated".
The controls for the file handling are in the OptimisationSwitches of
etc/controlDict:
OptimisationSwitches
{
...
//- Parallel IO file handler
// uncollated (default), collated or masterUncollated
fileHandler uncollated;
//- collated: thread buffer size for queued file writes.
// If set to 0 or not sufficient for the file size threading is not used.
// Default: 2e9
maxThreadFileBufferSize 2e9;
//- masterUncollated: non-blocking buffer size.
// If the file exceeds this buffer size scheduled transfer is used.
// Default: 2e9
maxMasterFileBufferSize 2e9;
}
When using the collated file handling, memory is allocated for the data in the
thread. maxThreadFileBufferSize sets the maximum size of memory in bytes that
is allocated. If the data exceeds this size, the write does not use threading.
When using the masterUncollated file handling, non-blocking MPI communication
requires a sufficiently large memory buffer on the master node.
maxMasterFileBufferSize sets the maximum size in bytes of the buffer. If the
data exceeds this size, the system uses scheduled communication.
The installation defaults for the fileHandler choice, maxThreadFileBufferSize
and maxMasterFileBufferSize (set in etc/controlDict) can be over-ridden within
the case controlDict file, like other parameters. Additionally the fileHandler
can be set by:
- the "-fileHandler" command line argument;
- a FOAM_FILEHANDLER environment variable.
A foamFormatConvert utility allows users to convert files between the collated
and uncollated formats, e.g.
mpirun -np 2 foamFormatConvert -parallel -fileHandler uncollated
An example case demonstrating the file handling methods is provided in:
$FOAM_TUTORIALS/IO/fileHandling
The work was undertaken by Mattijs Janssens, in collaboration with Henry Weller.
Fixed reaction source terms in the energy and species fraction equations
by multiplying by the phase fraction.
Resolves bug report https://bugs.openfoam.org/view.php?id=2591
Added a grow time and better allocate the CPU time to either add or grow. This
gives much more information to the user and helps changing the settings
accordingly.
Patch contributed by Francesco Contino
vectorField or vector2DField from scalarField components. To do this
properly and have it work for field-type combinations would require some
new field function macros.
Initially the listSwitches functions depended directly on argList functionality
but this has now been factored out so that the listSwitches functions are more
general and require only debug functionality.
Provides better context for the available boundary conditions, fvOptions,
functionObjects etc. and thus returns only those available to and compatible
with the particular application.
e.g.
pimpleFoam -help
Usage: pimpleFoam [OPTIONS]
options:
-case <dir> specify alternate case directory, default is the cwd
-listFunctionObjects
List functionObjects
-listFvOptions List fvOptions
-listRegisteredSwitches
List switches registered for run-time modification
-listScalarBCs List scalar field boundary conditions (fvPatchField<scalar>)
-listSwitches List switches declared in libraries but not set in
etc/controlDict
-listTurbulenceModels
List turbulenceModels
-listUnsetSwitches
List switches declared in libraries but not set in
etc/controlDict
-listVectorBCs List vector field boundary conditions (fvPatchField<vector>)
-noFunctionObjects
do not execute functionObjects
-parallel run in parallel
-postProcess Execute functionObjects only
-roots <(dir1 .. dirN)>
slave root directories for distributed running
-srcDoc display source code in browser
-doc display application documentation in browser
-help print the usage
pimpleFoam listTurbulenceModels
pimpleFoam -listTurbulenceModels
/*---------------------------------------------------------------------------*\
| ========= | |
| \\ / F ield | OpenFOAM: The Open Source CFD Toolbox |
| \\ / O peration | Version: dev |
| \\ / A nd | Web: www.OpenFOAM.org |
| \\/ M anipulation | |
\*---------------------------------------------------------------------------*/
Build : dev-39c46019e44f
Exec : pimpleFoam -listTurbulenceModels
Date : Jun 10 2017
Time : 21:37:49
Host : "dm"
PID : 675
Case : /home/dm2/henry/OpenFOAM/OpenFOAM-dev
nProcs : 1
sigFpe : Enabling floating point exception trapping (FOAM_SIGFPE).
SetNaN : Initialising allocated memory to NaN (FOAM_SETNAN).
fileModificationChecking : Monitoring run-time modified files using timeStampMaster (fileModificationSkew 10)
allowSystemOperations : Allowing user-supplied system call operations
// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
Turbulence models
3
(
LES
RAS
laminar
)
RAS models
18
(
LRR
LamBremhorstKE
LaunderSharmaKE
LienCubicKE
LienLeschziner
RNGkEpsilon
SSG
ShihQuadraticKE
SpalartAllmaras
kEpsilon
kOmega
kOmegaSST
kOmegaSSTLM
kOmegaSSTSAS
kkLOmega
qZeta
realizableKE
v2f
)
LES models
10
(
DeardorffDiffStress
Smagorinsky
SpalartAllmarasDDES
SpalartAllmarasDES
SpalartAllmarasIDDES
WALE
dynamicKEqn
dynamicLagrangian
kEqn
kOmegaSSTDES
)
Further work will be needed to support the -listTurbulenceModels option in
multiphase solvers.
discontinuous fields, with the discontinuity defined by a level set. The
functions do a proper integration of the discontinuous fields by tet-
and tri-cutting along the plane of the level set.
Provides the additional compression necessary to ensure interface integrity
adjacent to a boundary at a low angle of incidence to the interface. This is
particularly important when simulating planing hulls.
Updated the tetrahedron and triangle classes to use the barycentric
primitives. Removed duplicate code for generating random positions in
tets and tris, and fixed bug in tri random position.
This tutorial demonstrates moving mesh and AMI with a Lagrangian cloud.
It is very slow, as interaction lists (required to compute collisions)
are not optimised for moving meshes. The simulation time has therefore
been made very short, so that it finishes in a reasonable time. The
mixer only completes a small fraction of a rotation in this time. This
is still sufficient to test tracking and collisions in the presence of
AMI and mesh motion.
In order to generate a convincing animation, however, the end time must
be increased and the simulation run for a number of days.
and the continuous-phase simulation type
For LTS and steady-state simulations the transient option does not need to be
provided as only steady-state tracking is appropriate. For transient running
the Lagrangian tracking may be steady or transient.
The evolution of a KinematicParcel happens in three stages; (1) tracking
across the cell, (2) interaction with the face or patch that has been
hit, and (3) clculation and and update of parcel and cell properties.
The KinematicParcel used to evolve in this order, as steps 1 and 2 were
part of the same lower level method. This meant that the update stage
was done after interacting with the face, meaning the parcel was not in
the cell that had just been tracked through, or, by means of a patch
interaction, had been modified such that it was no longer representative
of the track through the cell.
With the separation of stages 1 and 2 in the base class, it is now
possible to do the update stage before interacting with the face (i.e.,
proceeding in the order 1, 3, 2). This makes the state consistent for
the updates, and avoids the issues described.
Patch contributed by Timo Niemi, VTT.
This resolves bug report https://bugs.openfoam.org/view.php?id=2282
Particle collisions with ACMI patches are now handled. The hit detects
whether the location is within the overlap or the coupled region and
recurses, calling the hit routine appropriate for the region.
The low level tracking methods are now more consistently named. There is
now a distinction between tracking to a face and hitting it. Function
object side effects have been moved out of the base layer and into the
parcels on which they are meaningful.
The TrackData::switchProcessor flag was not being set for some of the
tracking steps made by the more complicated parcels. In the case that a
parcel starts the step already on a processor boundary, this sometimes
lead to the particle being transferred back and forth indefinitely. The
flag is now explicitly set in all cases.
Tracking through an inverted region of the mesh happens in a reversed
direction relative to a non-inverted region. Usually, this allows the
tracking to propagate normally, regardless of the sign of the space.
However, in rare cases, it is possible for a straight trajectory to form
a closed loop through both positive and negative regions. This causes
the tracking to loop indefinitely.
To fix this, the displacement through inverted regions has been
artifically increased by a small amount (1% at the moment). This has the
effect that the change in track fraction over the negative part of the
loop no longer exactly cancels the change over the positive part, and
the track therefore terminates.
The KinematicCloud::patchData method has been made consistent on moving
meshes and/or when the time-step is being sub-cycled.
It has also been altered to calculate the normal component of a moving
patch's velocity directly from the point motions. This prevents an
infinite loop occuring due to inconsistency between the velocity used to
calculate a rebound and that used when tracking.
Some minor style improvements to the particle class have also been made.
The particle collector was collecting some particles twice due to a
tolerance extending the tracked path. This has been removed. The new
tracking algorithm does not generate the same sorts of spurious
tolerance-scale motions that the old one did, so this extension of the
tracking path is unnecessary.
Some particles were also not being collected at all as they were hitting
a diagonal of the collection polygon and registering as not having hit
either of the adjacent triangles. The hit criteria has been rewritten. A
hit now occurs when the normals of the triangles created by joining the
intersection point with the polygon edges are all in the same direction
as the overall polygon normal. This calculation is not affected by the
polygon's diagonals.
The issue was raised by, and resolved with support from, Karl Meredith
at FM Global.
This resolves bug-report https://bugs.openfoam.org/view.php?id=2595
This change changes the point-tetIndices-face interpolation function
method to take barycentric-tetIndices-face arguments instead. This
function is, at present, only used for interpolating Eulerian data to
Lagrangian particles.
This change prevents an inefficiency in cellPointInterpolation whereby
the position of the particle is calculated from it's barycentric
coordinates, before immediately being converted back to barycentric
coordinates to perform the interpolation.
The averaging methods now take the particle barycentric coordinates as
inputs rather than global positions. This change significantly optimises
Dual averaging, which is the most commonly used method. The run time of
the lagrangian/MPPICFoam/Goldschmidt tutorial has been reduced by a
factor of about two.
now possible with level-sets as well as planes. Removed tetPoints class
as this wasn't really used anywhere except for the old tet-cutting
routines. Restored tetPointRef.H to be consistent with other primitive
shapes. Re-wrote tet-overlap mapping in terms of the new cutting.
terms of the local barycentric coordinates of the current tetrahedron,
rather than the global coordinate system.
Barycentric tracking works on any mesh, irrespective of mesh quality.
Particles do not get "lost", and tracking does not require ad-hoc
"corrections" or "rescues" to function robustly, because the calculation
of particle-face intersections is unambiguous and reproducible, even at
small angles of incidence.
Each particle position is defined by topology (i.e. the decomposed tet
cell it is in) and geometry (i.e. where it is in the cell). No search
operations are needed on restart or reconstruct, unlike when particle
positions are stored in the global coordinate system.
The particle positions file now contains particles' local coordinates
and topology, rather than the global coordinates and cell. This change
to the output format is not backwards compatible. Existing cases with
Lagrangian data will not restart, but they will still run from time
zero without any modification. This change was necessary in order to
guarantee that the loaded particle is valid, and therefore
fundamentally prevent "loss" and "search-failure" type bugs (e.g.,
2517, 2442, 2286, 1836, 1461, 1341, 1097).
The tracking functions have also been converted to function in terms
of displacement, rather than end position. This helps remove floating
point error issues, particularly towards the end of a tracking step.
Wall bounded streamlines have been removed. The implementation proved
incompatible with the new tracking algorithm. ParaView has a surface
LIC plugin which provides equivalent, or better, functionality.
Additionally, bug report <https://bugs.openfoam.org/view.php?id=2517>
is resolved by this change.
2017-04-28 08:03:44 +01:00
13370 changed files with 454313 additions and 179462 deletions
OpenFOAM is a free, open source CFD software [released and developed primarily by OpenCFD Ltd](http://www.openfoam.com) since 2004. It has a large user base across most areas of engineering and science, from both commercial and academic organisations. OpenFOAM has an extensive range of features to solve anything from complex fluid flows involving chemical reactions, turbulence and heat transfer, to acoustics, solid mechanics and electromagnetics. [More...](http://www.openfoam.com/documentation)
OpenFOAM+ is professionally released every six months to include customer sponsored developments and contributions from the community, including the OpenFOAM Foundation. Releases designated OpenFOAM+ contain several man years of client-sponsored developments of which much has been transferred to, but not released in the OpenFOAM Foundation branch.
OpenFOAM is professionally released every six months to include customer sponsored developments and contributions from the community - individual and group contributors, fork re-integrations including from FOAM-extend and OpenFOAM Foundation Ltd - in this Official Release sanctioned by the OpenFOAM Worldwide Trademark Owner aiming towards one OpenFOAM.
# Copyright
@ -9,7 +10,7 @@ OpenFOAM is free software: you can redistribute it and/or modify it under the te
# OpenFOAM Trademark
OpenCFD Ltd grants use of the OpenFOAM trademark by Third Parties on a licence basis. ESI Group and the OpenFOAM Foundation Ltd are currently permitted to use the Name and agreed Domain Name. For information on trademark use, please refer to the [trademark policy guidelines](http://www.openfoam.com/legal/trademark-policy.php).
OpenCFD Ltd grants use of its OpenFOAM trademark by Third Parties on a licence basis. ESI Group and OpenFOAM Foundation Ltd are currently permitted to use the Name and agreed Domain Name. For information on trademark use, please refer to the [trademark policy guidelines](http://www.openfoam.com/legal/trademark-policy.php).
Please [contact OpenCFD](http://www.openfoam.com/contact) if you have any questions on the use of the OpenFOAM trademark.
@ -23,4 +24,4 @@ Violations of the Trademark are continuously monitored, and will be duly prosecu
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